BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0006.p (606 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 450 e-126 YPO1229 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 404 e-112 RSc3307 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 370 e-102 VCA1069 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vib... 269 2e-71 VC1289 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibr... 249 2e-65 PA4307 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseu... 223 1e-57 PA4310 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseu... 221 4e-57 RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 220 6e-57 PA4309 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseu... 213 1e-54 VC0098_2 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vi... 209 2e-53 >RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 617 Score = 450 bits (1158), Expect = e-126, Method: Compositional matrix adjust. Identities = 246/492 (50%), Positives = 342/492 (69%), Gaps = 1/492 (0%) Query: 4 TSLRTRLIALCAGIVVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWSDSK 63 S+RTR++ C IVV A+ N++ RS + + +A+ A I +W SK Sbjct: 20 NSIRTRILLTCVAIVVGALTLAGGLNYVVTRSYNDDAIRQNLQSVARGHIAGIDDWVASK 79 Query: 64 KLVVTSIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTKRPW 123 +V ++++AA +ADP+P +K +GGF Y+GY DK F+ P YDPT RPW Sbjct: 80 TQMVVALQDAALSADPVPALKTVAASGGFISVYVGYPDKSYKFADPSGVPPTYDPTARPW 139 Query: 124 YQQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVAIKP 183 Y+QAA+ +PV+T PY SASTGKL+VTFA + +DG + V A+DV +D V+A+V AI P Sbjct: 140 YKQAAEAGKPVVTPPYVSASTGKLVVTFAVPILRDGGLKGVVASDVSMDAVIANVKAIHP 199 Query: 184 TPNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGRRQM 243 TP S+ FL + +GKI+AHP+DK LKP+ DL A ++ TL +T V + G ++ Sbjct: 200 TPASFGFLVNAAGKIVAHPDDKFTLKPVTDLSADLSDATLAALAQTDKPLQVNVGGAAKL 259 Query: 244 LFVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLGRLT 303 L V GTDW LVVALD++DA A + +++ +S + V+V ++AA ++GA+ +R RL+ Sbjct: 260 LHRQGVQGTDWGLVVALDKSDATAGMRSLVTTSIGVLVVVALVAAAIVGAMTARAFRRLS 319 Query: 304 VVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIHAA 363 +++ A+++I G GDLT+RL G+ DE+ +I +FN F DK+ V+ IR S ++ +A Sbjct: 320 MIRDAMDDIGSGSGDLTKRLPADGQ-DEVAQIARSFNAFADKLTAVLQQIRLGSDSVRSA 378 Query: 364 SRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIATQG 423 +++IA+GN DLSQRTE QASSLE+TA++ME+LTS V+ NADNA QA+ L+ +AS +AT+G Sbjct: 379 AQEIAAGNADLSQRTEEQASSLEETASSMEELTSIVKQNADNARQASSLAVNASDVATRG 438 Query: 424 GTMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 483 G++V QVVQTM GIN SS+KI DII VI+ IAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 439 GSVVGQVVQTMGGINESSKKIADIIGVIESIAFQTNILALNAAVEAARAGEQGRGFAVVA 498 Query: 484 SEVRSLAQRGHG 495 SEVRSLAQR G Sbjct: 499 SEVRSLAQRSAG 510 >YPO1229 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 595 Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust. Identities = 235/489 (48%), Positives = 315/489 (64%), Gaps = 6/489 (1%) Query: 5 SLRTRLIALCAGIVVLAMLAI-VLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWSDSK 63 S+R+R++A C I+V LAI N+ A S +D +T L S + +IAEW SK Sbjct: 4 SIRSRILAACI-IIVAGSLAINTFLNYSVANKYNNSAIDNTLTALTVSHSVSIAEWVASK 62 Query: 64 KLVVTSIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTKRPW 123 ++ S+K++A ADPL +K AGGF Y+GYADK A+FS DYDPT RPW Sbjct: 63 TQMIMSLKDSALTADPLAALKQVAAAGGFINVYIGYADKTAIFSNPDGIPADYDPTGRPW 122 Query: 124 YQQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVAIKP 183 Y QA +PV+T PY A T +L+VTFA S+ +DG + V AADV + +V+A+V AI P Sbjct: 123 YLQAVNAGKPVVTPPYIDAGTQQLVVTFAWSIVQDGVLKGVIAADVTMGSVIANVNAIHP 182 Query: 184 TPNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGRRQM 243 T NS+ L G IIAHP L LKPLAD+ + QTL A V D++ G ++ Sbjct: 183 TDNSFGMLIGADGTIIAHPETLLTLKPLADIAPNLNLQTLLTA-TVPVSTDIS--GSSKL 239 Query: 244 LFVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLGRLT 303 L V GT W VVALD++ A A + ++L +S V V++ ++A V+ + R L LT Sbjct: 240 LLAQAVPGTQWFTVVALDKSQATAGIHSLLTTSLVTLVIIIFISAGVIALITQRALTPLT 299 Query: 304 VVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIHAA 363 +Q A++ I+ G DLT+RL GR DE+ +I +FN+F DK+ VM IR S ++ A Sbjct: 300 HIQQAMDAISSGSADLTQRLPIEGR-DEVAQIARSFNQFADKLSLVMAQIRGTSESVRVA 358 Query: 364 SRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIATQG 423 + +IA+GN DLS RTES A+SL+QT+AA+EQ++++V +A A QAN SAS+ A++G Sbjct: 359 ANEIAAGNQDLSGRTESAAASLQQTSAALEQISATVAQSASAARQANNAVFSASEDASRG 418 Query: 424 GTMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 483 G ++ +V+ TM I +S KI DI SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 419 GDVITKVITTMESIEKASGKIGDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 478 Query: 484 SEVRSLAQR 492 EVR LAQR Sbjct: 479 GEVRILAQR 487 >RSc3307 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 646 Score = 370 bits (951), Expect = e-102, Method: Compositional matrix adjust. Identities = 208/489 (42%), Positives = 303/489 (61%), Gaps = 2/489 (0%) Query: 4 TSLRTRLIALCAGIVVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWSDSK 63 +SLRTR++ + + V+ A+ + R+ T++++D +T +A AI +W +K Sbjct: 49 SSLRTRILVISSATVIGALALSGAATYAIVRASTLASIDQNLTAIASGNTLAIDKWVTAK 108 Query: 64 KLVVTSIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTKRPW 123 V + EA + DP VK A GF + +G+ DK FS DYDPT RPW Sbjct: 109 AQAVKATAEAVEYGDPHGLVKHMGDADGFPITTVGWTDK-TFFSTSAGTPKDYDPTARPW 167 Query: 124 YQQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVAIKP 183 Y+ A +P +T PY ASTG V+FA + ++G + V LD V V A+ P Sbjct: 168 YKSAIAAGKPTVTKPYGDASTGVPYVSFAAPLMRNGAATGALSGAVPLDGVREVVAAVHP 227 Query: 184 TPNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGRRQM 243 TP+S AF+ G++IAHP+ KL LKP+ ++ AA+TP L + +V L G ++ Sbjct: 228 TPSSLAFVVARDGQVIAHPDAKLMLKPVTEVSAALTPDALTSLAKATAPLEVELAGAAKL 287 Query: 244 LFVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLGRLT 303 L V GTDW LV+ALD+A+A A L ++ + GV VL+T+ A + ++ RL+ Sbjct: 288 LKAQAVQGTDWYLVIALDKAEATAGLRSVARALGVAMVLLTLAAVGIAAFFTAQSFRRLS 347 Query: 304 VVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIHAA 363 V+ A++ I G GDLT RL G +DE+ +I A+FN F+DKI V++++R + + +A Sbjct: 348 QVRDAMDTIGSGGGDLTHRLPVVG-NDEVAQISASFNTFIDKIGEVLLEVRASVENMKSA 406 Query: 364 SRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIATQG 423 + +I GN DLS RTE+ AS+L++T+AA+ +LT+SV+++A+ A+QA +L+ AS+ A +G Sbjct: 407 TGEIEMGNRDLSLRTETSASNLQETSAALTELTTSVKNSAEAAVQATRLAGEASEAAVRG 466 Query: 424 GTMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 483 G +V V TM+ I SS +I +II VID IAFQTNILALNAAVEAARAGE GRGFAVVA Sbjct: 467 GEVVSGAVSTMDAIAQSSSRISEIIGVIDSIAFQTNILALNAAVEAARAGENGRGFAVVA 526 Query: 484 SEVRSLAQR 492 EVR+LAQR Sbjct: 527 GEVRTLAQR 535 >VCA1069 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibrio cholerae Length = 639 Score = 269 bits (687), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 163/464 (35%), Positives = 260/464 (56%), Gaps = 20/464 (4%) Query: 50 QSQAAAIAEWSDSKKLVVTSIKEAAD---AADPLPFVKAAQTAGGFDLAYLGYADKHAVF 106 Q+ A I +W K+L + ++E + + +P ++ +G F L+Y G ++ +F Sbjct: 59 QAHAKGIGDWFLGKQLALKGLREEIERNPQLELVPHLRQTLQSGSFGLSYYGN-EQGEMF 117 Query: 107 SQQRS-RAPDYDPTKRPWYQQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVA 165 Q S DYDP R WY++A +P+ T PY S + L+VT A+ V GQ+ VA Sbjct: 118 RQDPSLNTADYDPRVRGWYKEAKAAGKPITTEPYVSVTMQTLVVTLAEPVRYQGQLIGVA 177 Query: 166 AADVLLDTVVADVVAIKPTPNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDE 225 A+++ LD ++ DV+AI+ YA L + GKI+AHP L LKP ++ A +T L+ Sbjct: 178 ASNLALDKLIKDVLAIEVPGKGYAILVNQKGKIVAHPTQDLILKPTEEMSAQLTISKLNI 237 Query: 226 AMRTGVHQDVALDGRRQMLFVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTV 285 A + +++DGR ++L V TDWLLV+ +D+ L+ ML+ + + + + Sbjct: 238 AAKDHSLFQLSMDGRDKVLMAEEVANTDWLLVMVMDKGVLEQPLNDMLMVQIGIGLGILL 297 Query: 286 LAALVLGALISRLLGRLTVVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDK 345 + AL+ ++R L L + AL +IA+GDGDLTRRLD + DE+G + FN+FVD+ Sbjct: 298 VMALLTSWFVARQLNELGNIANALADIAEGDGDLTRRLDVRSQ-DEVGLLADKFNKFVDR 356 Query: 346 IEHVMIDIRDASHTIHAASRDIASGNMDLSQRTESQ-------ASSLEQTAAAMEQLTSS 398 + ++ ++R+ S + + A+ S+R +Q A+++ + A+A ++ S+ Sbjct: 357 LHQMVKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEIASN 416 Query: 399 VRHNADNAMQANQLSQSASQIATQGGTMVEQVVQTMNG-------INASSQKIVDIISVI 451 + A NA Q+ QL + Q ++Q+ Q + G + + +I I+S I Sbjct: 417 AENTAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTILSTI 476 Query: 452 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRGHG 495 GIA QTN+LALNAA+EAARAGEQGRGFAVVA EVR L+QR H Sbjct: 477 RGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHA 520 >VC1289 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibrio cholerae Length = 631 Score = 249 bits (635), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 174/516 (33%), Positives = 279/516 (54%), Gaps = 27/516 (5%) Query: 1 MKSTSLRTRLIALCAGIVVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWS 60 MK T L+ +LI VV+ A+ + + +T + + T+ ++ + A I++W Sbjct: 5 MKLT-LKHKLIGASLSAVVVMATALTWFSASQLQQQTSNAVYTRADAISSTAAKGISDWI 63 Query: 61 DSKKLVVTSIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQ-QRSRAPDYDPT 119 +K + T+ +A + +P+++ A+ AGGFD + G D S +R+RA DYDP Sbjct: 64 SIRKSISTAFNAHIEAQNVVPYLQQARNAGGFDDIFYGTTDGAMYRSHPERNRA-DYDPR 122 Query: 120 KRPWYQQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVV 179 RPWY+ AA + ++T Y+ A TG LLVT A+ V +G ++ V ADVL+D ++ADV+ Sbjct: 123 TRPWYKDAASAGKQIITTAYSDAITGALLVTIAEPVRLNGNMSGVVGADVLIDQLIADVI 182 Query: 180 AIKPTPNSYAFLAD-LSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALD 238 ++ N+ L D +G +AHP+ L LKP+ L +A+ +T++ A G + L+ Sbjct: 183 SMDAGKNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMRTIERAANQGELLALKLN 242 Query: 239 GRRQMLFVARVGGTDWLLVVALDRADALASLSAM---LVSSGVMAVLVTVLAALVLGALI 295 G + F V T W V +D AS S + L+++ ++ ++ V+ L + + Sbjct: 243 GVEKFFFFTAVPDTPWYFAVQMDSDTEYASHSELLTGLITTALLITVIVVVIVSWLVSFL 302 Query: 296 SRLLGRLTVVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRD 355 R LGR V ALEEIA GD DLT+RL+ DE+G++ + FN FV + +++ + Sbjct: 303 FRDLGR---VSKALEEIASGDADLTQRLEPRS-DDEVGQLASNFNTFVSNMHTMVLKLSH 358 Query: 356 ASHTIHAASRDIASGNMDLSQRTESQ-------ASSLEQTAAAMEQLTSSVRHNADNAMQ 408 S + S+ A+ + S R Q A+++ + AAA +++ + H A NA + Sbjct: 359 VSAALAQQSKVTAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHTAQNAGE 418 Query: 409 --------ANQLSQSASQIATQGGTMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNI 460 A Q++Q+ I + V+ + + + A +I I+S I IA QTN+ Sbjct: 419 AVTACVHGAGQVTQTQRSIQSLAEE-VQVATEVIQELEAHGHQISTILSTIQNIAEQTNL 477 Query: 461 LALNAAVEAARAGEQGRGFAVVASEVRSLAQRGHGG 496 LALNAA+EAARAGEQGRGFAVVA EVR L+QR H Sbjct: 478 LALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHAS 513 >PA4307 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseudomonas aeruginosa Length = 632 Score = 223 bits (567), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 162/518 (31%), Positives = 260/518 (50%), Gaps = 31/518 (5%) Query: 1 MKSTSLRTRLIALCAGIVVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWS 60 ++S S +++ A +VV A +L N R + + + ++ A+ I W Sbjct: 2 LRSLSFAKKILLAAALVVVFAFSCFILYNDYRQREAVRTDTENYLGEIGTLTASNIQSWL 61 Query: 61 DSKKLVVT------SIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAP 114 + + +V ++ + D A+ ++ + F YLG A + P Sbjct: 62 EGRMHLVEGLASQLALLDQPDEANIARQLEQPVFSRNFASVYLGEAASGTFTMRPYDAMP 121 Query: 115 D-YDPTKRPWYQQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDT 173 + YDP R WY+ A ++T P+ A TG+ ++ + V GQ+ VAA D+ L+T Sbjct: 122 EGYDPRTRAWYKDALAADRLIVTEPFVDAGTGEQILAMSLPVRHAGQLLGVAAGDMKLET 181 Query: 174 VVADVVAIKPTPNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQ 233 + A + ++K YAFL +GKI+ HP+ L LK LA+ P + GVH+ Sbjct: 182 LTAILNSLKFDGAGYAFLVSDAGKILLHPDSGLVLKTLAEAYPKGAPNIV-----PGVHE 236 Query: 234 DVALDGRRQMLFVARVG---GTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALV 290 V LDG Q + V G W + + LDR A + LS S+ V ++ V L+ Sbjct: 237 -VELDGSSQFVSFTPVKGLPGVTWYVALVLDRDTAYSMLSEFRTSAIVATLIAVVGIMLL 295 Query: 291 LGALISRLLGRLTVVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVM 350 LG LI L+ LT + A+++IA G+GDLT+RL +DE G + AFNRFV++I + Sbjct: 296 LGMLIRVLMQPLTDMGRAMQDIAQGEGDLTKRLKVTS-NDEFGTLANAFNRFVERIHESI 354 Query: 351 IDIRDASHTIHAASRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQAN 410 ++ + +H ++ + + + ++ Q++ AAA+ +L ++ + A NA A+ Sbjct: 355 REVAGTARQLHDVAQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQEIARNAADAS 414 Query: 411 QLSQSASQIATQGGTMVEQVVQTMN--------------GINASSQKIVDIISVIDGIAF 456 + A+ A G +VEQ ++ MN +N+ + I I+ VI GI+ Sbjct: 415 HHASDANHQAEDGKQVVEQTIRAMNELSEKISASCANIEALNSRTVNIGQILEVIKGISE 474 Query: 457 QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRGH 494 QTN+LALNAA+EAARAGE GRGFAVVA EVR+LA R Sbjct: 475 QTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRAQ 512 >PA4310 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseudomonas aeruginosa Length = 629 Score = 221 bits (563), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 157/507 (30%), Positives = 256/507 (50%), Gaps = 31/507 (6%) Query: 11 IALCAGIVVLAMLAIV-LTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWSDSKKLVVTS 69 I L A +VV+A ++ L N R+ L+ + ++ + A+ + W + L++ + Sbjct: 11 ILLAAALVVIATFSLFTLYNDSLQRASIREDLEDYLHEMGEITASNVQNWLSGRILLIEN 70 Query: 70 IKEAADAADPLP-----FVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTKRPWY 124 + + A D P ++ F YLG D DYDP +RPWY Sbjct: 71 LAQTL-ARDHSPETTQALLEQPLLGSTFLFTYLGQTDGTYTARPTSDLPADYDPRRRPWY 129 Query: 125 QQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVAIKPT 184 A + LT PY + +L++T A + GQ V D+ L TVV + ++ Sbjct: 130 NAATSAGQTTLTEPYMEPAIHELVLTIASPARQGGQPFGVVGGDLSLQTVVKIINSLDFG 189 Query: 185 PNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGRRQML 244 YAFL GKI+ HP+ +K L+D+ TP+ + +G + L G ++L Sbjct: 190 GMGYAFLVSGDGKILVHPDKDQVMKSLSDVYPRNTPK-----IGSGF-SEAELHGNTRIL 243 Query: 245 FVARV---GGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLGR 301 + V G DW + +++D+ A A L+ + S+ V A++ V L+LG LI L+ Sbjct: 244 SFSPVKGLSGLDWYIGISVDKDKAYAMLTKLRTSAIVAALIAVVAIVLLLGMLIRVLMQP 303 Query: 302 LTVVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIH 361 LT + A+++IA G+GDLT+RL +DE G + +FNRFV++I + ++ + +H Sbjct: 304 LTDMGRAMQDIAQGEGDLTKRLKVTS-NDEFGALAISFNRFVERIHESIREVAGTARQLH 362 Query: 362 AASRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIAT 421 ++ + + + ++ Q++ AAA+ +L ++ + A NA A+ + A+ A Sbjct: 363 DVAQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQEIARNAADASHHASDANHQAE 422 Query: 422 QGGTMVEQVVQTMN--------------GINASSQKIVDIISVIDGIAFQTNILALNAAV 467 G +VEQ ++ MN +N+ + I I+ VI GI+ QTN+LALNAA+ Sbjct: 423 DGKQVVEQTIRAMNELSEKISASCANIEALNSRTVNIGQILEVIKGISEQTNLLALNAAI 482 Query: 468 EAARAGEQGRGFAVVASEVRSLAQRGH 494 EAARAGE GRGFAVVA EVR+LA R Sbjct: 483 EAARAGEAGRGFAVVADEVRNLAHRAQ 509 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 220 bits (561), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 126/215 (58%), Positives = 161/215 (74%), Gaps = 3/215 (1%) Query: 278 VMAVLVTVLAALVLGALISRLLGRLTVVQGALEEIADGDGDLTRRLDTHGRSDELGRIGA 337 V+AVL T+LA + GA I+R + R L E A G+LT L+ + DE+GR+ A Sbjct: 194 VLAVLATLLA-IATGAFITRTITRPINHAMHLAE-AVAQGNLTHLLEVDTQ-DEIGRLLA 250 Query: 338 AFNRFVDKIEHVMIDIRDASHTIHAASRDIASGNMDLSQRTESQASSLEQTAAAMEQLTS 397 A ++ + ++ +R + TI AS ++ASGN+DLS RTE QASSLE+TAAAMEQLTS Sbjct: 251 ALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASSLEETAAAMEQLTS 310 Query: 398 SVRHNADNAMQANQLSQSASQIATQGGTMVEQVVQTMNGINASSQKIVDIISVIDGIAFQ 457 +V+ NADNA +A++L+ +AS +AT+GG V++ +QTM+ IN SS+KIVDII VIDGIAFQ Sbjct: 311 TVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIVDIIGVIDGIAFQ 370 Query: 458 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQR 492 TNILALNAAVEAARAGEQGRGFAVVA EVRSLAQR Sbjct: 371 TNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQR 405 >PA4309 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseudomonas aeruginosa Length = 629 Score = 213 bits (541), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 165/510 (32%), Positives = 259/510 (50%), Gaps = 37/510 (7%) Query: 11 IALCAGIVVLAMLAIV-LTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWSDSKKLVVTS 69 I L A +VV A A+ L N R+ L++ + ++ ++ I W + L+V Sbjct: 11 ILLAASLVVFAAFALFTLYNDYLQRNAIREDLESYLREMGDVTSSNIQNWLGGRLLLVEQ 70 Query: 70 IKEAADAADPLP-----FVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAP---DYDPTKR 121 + A D P ++ F YLG D VF+ R +P YDP R Sbjct: 71 TAQTL-ARDHSPETVSALLEQPALTSTFSFTYLGQQD--GVFTM-RPDSPMPAGYDPRSR 126 Query: 122 PWYQQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVAI 181 PWY+ A LT PY A+T +L++T A V G V D+ L T+V + ++ Sbjct: 127 PWYKDAVAAGGLTLTEPYVDAATQELIITAATPVKAAGNTLGVVGGDLSLKTLVQIINSL 186 Query: 182 KPTPNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGRR 241 + YAFL GKI+ HP+ + +K L+++ TP+ + TG + L G Sbjct: 187 DFSGMGYAFLVSGDGKILVHPDKEQVMKTLSEVYPQNTPK-----IATGF-SEAELHGHT 240 Query: 242 QMLFVARVGG---TDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRL 298 ++L + G W L +++D+ A A LS VS+ A++ V ++LG LI L Sbjct: 241 RILAFTPIKGLPSVTWYLALSIDKDKAYAMLSKFRVSAIAAALISIVAILVLLGLLIRLL 300 Query: 299 LGRLTVVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASH 358 + L ++ A+++IA G+GDLT+RL R DE G +G AFN+FV++I + ++ +H Sbjct: 301 MQPLHLMGRAMQDIAQGEGDLTKRLAVTSR-DEFGVLGDAFNQFVERIHRSIREVAGTAH 359 Query: 359 TIHAASRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQ 418 +H S+ + + + ++ Q++ AAA+ +L ++ + A NA A+ + A+ Sbjct: 360 KLHDVSQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQEIARNAADASHHASDANH 419 Query: 419 IATQGGTMVEQVVQTMN--------------GINASSQKIVDIISVIDGIAFQTNILALN 464 A G +VEQ ++ MN +N+ + I I+ VI GI+ QTN+LALN Sbjct: 420 QAEDGKQVVEQTIRAMNELSEKISASCANIEALNSRTVNIGQILEVIKGISEQTNLLALN 479 Query: 465 AAVEAARAGEQGRGFAVVASEVRSLAQRGH 494 AA+EAARAGE GRGFAVVA EVR+LA R Sbjct: 480 AAIEAARAGEAGRGFAVVADEVRNLAHRAQ 509 >VC0098_2 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibrio cholerae Length = 363 Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 109/183 (59%), Positives = 136/183 (74%), Gaps = 1/183 (0%) Query: 317 GDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIHAASRDIASGNMDLSQ 376 GDL+ +L TH E +G ++F+ + ++ DI + TI A+ +I++GN DLS Sbjct: 20 GDLSAQL-THPFEGEFAELGEVISQFIVTLRQIITDINSVAATIKLAATEISNGNTDLSS 78 Query: 377 RTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIATQGGTMVEQVVQTMNG 436 RTE QAS+LEQTA++ME+L S+VR N+DNAMQAN L+ A++IA GG ++EQVV TM Sbjct: 79 RTEQQASNLEQTASSMEELNSTVRQNSDNAMQANILAGKATEIAASGGELIEQVVVTMAS 138 Query: 437 INASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRGHGG 496 IN S+QKI DII VIDGIAFQTNILALNAAVEAARAGEQGRGF+VVASEVRSLAQR Sbjct: 139 INESAQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFSVVASEVRSLAQRSANA 198 Query: 497 QGD 499 D Sbjct: 199 AKD 201