BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0004.p (261 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0791 [K] COG2207 AraC-type DNA-binding domain-containing prote... 193 4e-49 PA3927 [K] COG2207 AraC-type DNA-binding domain-containing prote... 192 8e-49 RSc3062 [K] COG2207 AraC-type DNA-binding domain-containing prot... 187 2e-47 PA1235 [K] COG2207 AraC-type DNA-binding domain-containing prote... 171 2e-42 PA1599 [K] COG2207 AraC-type DNA-binding domain-containing prote... 161 2e-39 BMEI1291 [K] COG2207 AraC-type DNA-binding domain-containing pro... 160 2e-39 PA0864 [K] COG2207 AraC-type DNA-binding domain-containing prote... 159 7e-39 mll2686 [K] COG2207 AraC-type DNA-binding domain-containing prot... 155 7e-38 PA0163 [K] COG2207 AraC-type DNA-binding domain-containing prote... 154 2e-37 PA3830 [K] COG2207 AraC-type DNA-binding domain-containing prote... 152 6e-37 >PA0791 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 262 Score = 193 bits (490), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 105/247 (42%), Positives = 147/247 (59%), Gaps = 1/247 (0%) Query: 1 VDTFQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALW 60 ++ + P +VVA + LL H HRR QLLY GVMQVRT W+VPP RA+W Sbjct: 6 IEQYDATPRAVVAMGTDYPDGYLLPRHRHRRAQLLYGASGVMQVRTGDAGWVVPPQRAVW 65 Query: 61 VPPQVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQ 120 +PP VEHE+ ML VS R+LYI + C++L VS LLR+L+LA + P +Y + Sbjct: 66 IPPGVEHEVRMLG-VSTRSLYIEPGSAMAMPAHCQVLAVSPLLRQLLLAAVDMPLEYDTE 124 Query: 121 SRAGHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLVDWAGMGGASV 180 R G +A L+L ELA A +P+ +P P + R A+CEA L +P + S WAG+ S+ Sbjct: 125 GRDGALATLLLHELAAAETLPLHVPLPPEPRWLALCEAFLVEPDIRASAERWAGLLHTSL 184 Query: 181 RTVIRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKAL 240 R+ R F + TGL F W Q+ + +AL RL+ G+ V +A GY+S +AFS MFR+ L Sbjct: 185 RSFNRTFRRYTGLSFGAWKQRACVVQALARLAGGETVTAIALDCGYQSPAAFSTMFRRVL 244 Query: 241 RTTPNHY 247 P+ + Sbjct: 245 GQPPSAF 251 >PA3927 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 262 Score = 192 bits (487), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 115/255 (45%), Positives = 153/255 (60%), Gaps = 9/255 (3%) Query: 4 FQHLPSSVVA-FARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALWVP 62 +H P ++A + + L H H + Q LYA G+M++ T G W++PP RA+W+P Sbjct: 3 IEHRPDGLLAAISLDFPDGHHLGRHFHPQAQFLYAARGLMRLATHHGAWVIPPTRAVWIP 62 Query: 63 PQVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELIL---ALLAEPR-DYA 118 P+VEHEI M +V MRTL+I Q + C +L V+ LLRE+IL L ++PR D Sbjct: 63 PRVEHEIFMSGEVHMRTLFIEQPETPTPLSDCCVLAVTPLLREMILRAIHLESQPRLDDF 122 Query: 119 PQSRAGHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLVDWAGMGGA 178 Q G LILSE+A +P+ +P P DRRLQAIC+A+L P +L DW GA Sbjct: 123 CQRLQG----LILSEIANLERMPLYLPMPRDRRLQAICQALLKQPELGLTLDDWGLRVGA 178 Query: 179 SVRTVIRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRK 238 S RT+ RLF +E + F W QQ+ L+EAL RL GD V VVA+ LGY S AFS+MFR+ Sbjct: 179 SSRTLARLFAQELQMSFHEWRQQLRLTEALPRLLAGDSVQVVARDLGYGSTRAFSSMFRR 238 Query: 239 ALRTTPNHYLQRQER 253 L TP YL R E+ Sbjct: 239 LLGETPRDYLGRLEQ 253 >RSc3062 [K] COG2207 AraC-type DNA-binding domain-containing proteins Rso Ralstonia solanacearum Length = 268 Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 99/237 (41%), Positives = 146/237 (61%), Gaps = 2/237 (0%) Query: 14 FARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALWVPPQVEHEILMLS 73 + R++ A H+H Q+ Y+ GV++V+ W+VPP RA+W+PP +EHE+ ++ Sbjct: 26 YTRQMQANSRFPRHTHAWAQVAYSHTGVLRVQAGDTAWVVPPSRAIWIPPGIEHEVWVVE 85 Query: 74 KVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQSRAGHVAELILSE 133 +RTLY++ + QCR++EVS LLRELI A+ + R +R VA LIL E Sbjct: 86 AAFLRTLYVDPSVVTGTLAQCRVMEVSPLLRELIAAM--DVRRPLSAAREQAVATLILDE 143 Query: 134 LARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLVDWAGMGGASVRTVIRLFPKETGL 193 L R+ +P+ +P P D+RL+A+CE ++ADPG + A GAS RT+ R F E G+ Sbjct: 144 LHRSAPLPLDLPMPTDKRLRALCERVMADPGTPLTFDALAREVGASTRTLARRFRDELGV 203 Query: 194 QFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKALRTTPNHYLQR 250 F W QQ L+ A+ +S+G P+ +AQALGY SQSAFS MFR+A +P+ +L R Sbjct: 204 NFSQWRQQAVLASAIPLMSQGLPLSRIAQALGYNSQSAFSAMFRRAFGQSPSAFLHR 260 >PA1235 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 260 Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 101/246 (41%), Positives = 146/246 (59%), Gaps = 2/246 (0%) Query: 7 LPSS--VVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALWVPPQ 64 LPS+ V A+A++ + + H H R QL++A+ GV+ V T +G W+VPP R +W+P Sbjct: 5 LPSTRPVFAYAQDYLHGERVELHRHSRAQLIHALSGVVTVGTAEGTWVVPPGRGVWLPAG 64 Query: 65 VEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQSRAG 124 +EH + +V MRTL+I +L CR+++V LLR+LI+A + DY P R Sbjct: 65 IEHALRFAGQVRMRTLFIAPQARHDLPRDCRVVDVPPLLRQLIVAAMRIAPDYPPGGRDE 124 Query: 125 HVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLVDWAGMGGASVRTVI 184 V ELIL EL P + + +P P D RL A+C ++ A+P +SL D A G S RT+ Sbjct: 125 RVMELILDELRVLPILALHVPQPVDPRLAALCRSLRAEPAADWSLGDAARRLGVSPRTLT 184 Query: 185 RLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKALRTTP 244 R F +ETGL F W++++ L +L L+ G + VA LGY SQSAFS MFR+ L +P Sbjct: 185 RAFQRETGLSFVQWLRRMRLLASLDALAAGHSILEVALDLGYDSQSAFSAMFRRTLGVSP 244 Query: 245 NHYLQR 250 + Y R Sbjct: 245 SLYFGR 250 >PA1599 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 260 Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 99/244 (40%), Positives = 139/244 (56%), Gaps = 4/244 (1%) Query: 4 FQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALWVPP 63 F+ LP +V A E+ A + H H GQL+YA G ++ T + +LVP RALW+PP Sbjct: 13 FRSLPCAVYLRAFEMPAGHRVEMHDHPWGQLMYAASGTLRASTERHSYLVPAQRALWIPP 72 Query: 64 QVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQSRA 123 V H + V R+LY++ R L CR+LEVS LLREL+L PR+Y P A Sbjct: 73 GVRHAAEACNPVLFRSLYLD----RSLPGGCRVLEVSGLLRELLLRAAEFPREYPPGGEA 128 Query: 124 GHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLVDWAGMGGASVRTV 183 + +++ E+ R P+ +P PGD RL+ I +A+ ADP + DWAG+ GAS RT+ Sbjct: 129 ERLMQVVADEVGRLREAPLNLPLPGDPRLRRITDALQADPADPRGISDWAGLVGASRRTL 188 Query: 184 IRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKALRTT 243 RLF ++T L FR W Q++ L A+ L G V VA LGY S SAF ++F++ T Sbjct: 189 ARLFREQTQLSFREWRQRLRLLNAVAALEEGASVTRVASDLGYDSTSAFISLFQRHFGQT 248 Query: 244 PNHY 247 P + Sbjct: 249 PGCF 252 >BMEI1291 [K] COG2207 AraC-type DNA-binding domain-containing proteins Bme Brucella melitensis Length = 300 Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 126/226 (55%) Query: 27 HSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALWVPPQVEHEILMLSKVSMRTLYINQAQ 86 HSH R QLL A +GV+ V T G W++P A+W+P VEH + +L V MR++YI+ Sbjct: 62 HSHSRAQLLCASQGVVLVTTDAGRWMIPSDHAMWIPAGVEHSVAILGDVFMRSIYISVDA 121 Query: 87 GRELGEQCRLLEVSVLLRELILALLAEPRDYAPQSRAGHVAELILSELARAPAIPVAIPW 146 + ++ ++ L+R LI+ + AP+SR G V ELIL +L P P+ +P+ Sbjct: 122 ISGVPNYLHVVGLTDLMRCLIIDATSHDSIPAPESRDGLVIELILRDLHTLPEYPLGLPF 181 Query: 147 PGDRRLQAICEAILADPGRQFSLVDWAGMGGASVRTVIRLFPKETGLQFRHWVQQVHLSE 206 P D RLQ +C + P + ++ +WA S R+ R F +ETG+ W QQ L Sbjct: 182 PSDPRLQKLCRDFVKKPSSRATIDEWADRMAMSRRSFTRHFQRETGVSLSVWRQQACLFA 241 Query: 207 ALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKALRTTPNHYLQRQE 252 A+ RLS G+PV VA LGY S SAF+ MFR+ L P Y R + Sbjct: 242 AVPRLSEGEPVTSVALDLGYDSVSAFTTMFRRMLGVPPKFYQPRLD 287 >PA0864 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 262 Score = 159 bits (401), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 96/235 (40%), Positives = 137/235 (58%), Gaps = 4/235 (1%) Query: 15 ARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALWVPPQVEHEILMLSK 74 AR A + AH H GQ+LYAV G+M + TP VPP RA+W+PP + H + + S+ Sbjct: 20 ARSYPAGHRVDAHEHAWGQVLYAVSGMMWLETPDEALPVPPQRAVWLPPGLRHAVRVASE 79 Query: 75 VSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQSRAGHVAELILSEL 134 + MR +Y++ R L ++ +L V LLRELI++L+ + R P +A+L + EL Sbjct: 80 LQMRNIYLSPELSRGLEDRTLVLVVGPLLRELIVSLVEQERQSDPHYYRA-LADLAVLEL 138 Query: 135 ARAPAIPVAIPWP--GDRRLQAICEAILADPGRQFSLVDWAGMGGASVRTVIRLFPKETG 192 RA + +P P DRRL A+C+A++A+P L A GASVRT+ RLF + G Sbjct: 139 GRARRSSLRVPLPDASDRRLLALCQAVMANPSLDIGLERLAEDAGASVRTLSRLFQRSLG 198 Query: 193 LQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKALRTTPNHY 247 + F W +QV L+ A L G PV +A ALGY + SAFS+MFR+ L +P Y Sbjct: 199 MGFADWRRQVQLATAAAALIDGRPVAGIAHALGY-TPSAFSDMFRRELGVSPTEY 252 >mll2686 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 292 Score = 155 bits (393), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 128/223 (57%) Query: 27 HSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALWVPPQVEHEILMLSKVSMRTLYINQAQ 86 H HRR QLL+A+ GV+ V T G W+VPP A+W+P +EH + ML VSMR++Y+ Sbjct: 49 HRHRRSQLLHALVGVVLVTTRHGRWMVPPDHAMWIPAGIEHSVEMLGDVSMRSVYVMPGA 108 Query: 87 GRELGEQCRLLEVSVLLRELILALLAEPRDYAPQSRAGHVAELILSELARAPAIPVAIPW 146 L E R++ V+ L+ LI+ P+ + R G + +L+L E+ P P+ +P+ Sbjct: 109 IPGLPEGLRVVGVTELMHSLIVESEKLPQGGELEGRGGLIMKLLLHEIPTLPERPLGLPF 168 Query: 147 PGDRRLQAICEAILADPGRQFSLVDWAGMGGASVRTVIRLFPKETGLQFRHWVQQVHLSE 206 P D RL A+C +A P ++ +WA G S R+ R F ++TGL W QQ L Sbjct: 169 PSDARLAALCRRFVAAPSPHATIDEWADAAGMSRRSFTRAFQRQTGLSLSTWRQQACLFA 228 Query: 207 ALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKALRTTPNHYLQ 249 AL RL+ G+P+ VA LGY S AF MF++ L ++P Y++ Sbjct: 229 ALPRLADGEPITRVALDLGYDSVPAFITMFKRMLGSSPRGYMR 271 >PA0163 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 265 Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/252 (34%), Positives = 135/252 (53%), Gaps = 1/252 (0%) Query: 1 VDTFQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALW 60 + T LP V A A L A + H H QL YA+ GV+ V T +G + PP RA+W Sbjct: 14 IPTLARLPRPVYARAESLRAGSWTSRHRHAWVQLSYAISGVLGVHTAEGSFFAPPQRAIW 73 Query: 61 VPPQVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQ 120 +P Q+EHE++ ++ MR+LYI +CR+LEV+ L RELI + P DY Sbjct: 74 IPAQLEHEVVTSTRAEMRSLYIRGDACAWAPTRCRVLEVTPLARELIKSFCELPVDYPEG 133 Query: 121 SRA-GHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLVDWAGMGGAS 179 A + +++L +L P + ++P P + RL +C+A++ +P + ++ DWA G S Sbjct: 134 DSAESRLVQVLLDQLRLLPEVAFSLPMPREPRLLRLCQALIDEPTQSLTMGDWAQRLGTS 193 Query: 180 VRTVIRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKA 239 +T+ RLF +ETG+ +R W Q+ L +L L GD V A GY S SA+ F+ Sbjct: 194 EKTLSRLFQRETGMNYRLWRQRQRLLASLNALEAGDSVTGAALDSGYDSTSAYIAAFKGL 253 Query: 240 LRTTPNHYLQRQ 251 TP +++ Sbjct: 254 FGFTPGELFRQR 265 >PA3830 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 270 Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 142/246 (57%), Gaps = 1/246 (0%) Query: 4 FQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALWVPP 63 +Q + + A+ A ++ H H R QL++A+ GV+++ + +WLVPP RA+W+P Sbjct: 19 YQRVGRPLGVMAKTFPAGFVVAEHRHERAQLIHALSGVIELHVGRTLWLVPPQRAVWMPA 78 Query: 64 QVEHEILMLSKVSMRTLYIN-QAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQSR 122 + H +L +V + T+Y+ Q+ E R + VS LLRELI+ P Y + R Sbjct: 79 GMAHAMLARGEVRLHTVYVRPQSCPPEFPRVPRGVMVSPLLRELIVRAAGLPLLYDERGR 138 Query: 123 AGHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLVDWAGMGGASVRT 182 G + ++L EL + P+A+P P DRRL +C+A+L +P L +WA GAS RT Sbjct: 139 EGRLMAVLLDELEWSREQPLALPDPADRRLGRVCQALLENPADPRGLEEWARYVGASSRT 198 Query: 183 VIRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKALRT 242 + RLF E G+ F HW QV L+ AL RL+ G+ V +A LGY++ SAFS MFR+ + Sbjct: 199 LARLFLSELGVTFVHWRHQVRLAAALPRLAAGEAVARIAVDLGYQTPSAFSAMFRRLTGS 258 Query: 243 TPNHYL 248 TP+ Y Sbjct: 259 TPSRYF 264