BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0093.p (295 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 334 1e-91 RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 333 2e-91 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 314 1e-85 RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 313 2e-85 RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 311 8e-85 RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 306 4e-83 RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 306 5e-83 RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 305 7e-83 PA0176 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseu... 304 1e-82 RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 303 3e-82 >RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 629 Score = 334 bits (857), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 189/267 (70%), Positives = 227/267 (85%) Query: 1 LFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEEL 60 L+A+ MR +LV + ++R + TI A+ EIASGNLDLSSRTEQQASSLEETASAMEEL Sbjct: 256 LYAMGRMRGALVQTIGRIRGASETIGTATREIASGNLDLSSRTEQQASSLEETASAMEEL 315 Query: 61 MTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIA 120 M+TV+QNADNA QA+QLAVSAS+VA +GG+VV++VV TM INASSRKIVDII VIDGIA Sbjct: 316 MSTVQQNADNANQANQLAVSASDVAVRGGDVVSRVVETMGSINASSRKIVDIIGVIDGIA 375 Query: 121 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGS 180 FQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEI LI+DSV+ ++ GS Sbjct: 376 FQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDDSVTNVDAGS 435 Query: 181 SLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVE 240 +LVE+AG TM +V SV+RVTD+V EI+ ASQEQ GI +V+ A+T +D+ATQQN+ALVE Sbjct: 436 ALVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAVTQLDDATQQNAALVE 495 Query: 241 EAAAAANSMKEQAGALSGLVATFRLDA 267 +AAAAA S++EQA +L+ +VA FRLD Sbjct: 496 QAAAAAQSLQEQADSLTQVVAQFRLDP 522 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 333 bits (855), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 180/285 (63%), Positives = 231/285 (81%) Query: 1 LFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEEL 60 L A+K+M ++L IV+QVR GT TI +ASSE+ASGN+DLSSRTEQQASSLEETA+AME+L Sbjct: 249 LAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASSLEETAAAMEQL 308 Query: 61 MTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIA 120 +TVKQNADNA++AS+LA +AS VA++GG+ V + + TM IN SSRKIVDII VIDGIA Sbjct: 309 TSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIVDIIGVIDGIA 368 Query: 121 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGS 180 FQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEI LI DSV + G+ Sbjct: 369 FQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIEDSVGHVSTGT 428 Query: 181 SLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVE 240 + VE+AGQ + +VV ++ VT++V+EIS +S+EQS GI Q+N AIT MD+ATQ+N++LVE Sbjct: 429 AKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMDKATQENASLVE 488 Query: 241 EAAAAANSMKEQAGALSGLVATFRLDAQQARQSGYSQASAPAHAH 285 E+A AA ++++QA L+ +V+TF+L A + + +Q A + AH Sbjct: 489 ESATAAQALQDQANQLADMVSTFKLHADLSGRGRAAQGEAGSVAH 533 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 314 bits (805), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 170/263 (64%), Positives = 212/263 (80%) Query: 3 AIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEELMT 62 ++K+M+ LV+IV +VR G I +SEIA GN DLS+RTEQQA+SLEETA++ME+L Sbjct: 255 SLKHMQSELVTIVGEVRVGADAIYSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTA 314 Query: 63 TVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQ 122 TVKQNA+NA+QASQLA+SASE A +GG+VVA VV TM I SS+KI DI SVIDGIAFQ Sbjct: 315 TVKQNAENARQASQLALSASETAQKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQ 374 Query: 123 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSL 182 TNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AAKEI LI+DSV++++ GS L Sbjct: 375 TNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVL 434 Query: 183 VEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVEEA 242 VE AG+TM ++VN+V RVTD++ EI+ AS EQS GI Q+ A+ MD TQQN++LVEE+ Sbjct: 435 VESAGETMGDIVNAVTRVTDIMGEIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEES 494 Query: 243 AAAANSMKEQAGALSGLVATFRL 265 A+AA S++EQA L+ ++ F L Sbjct: 495 ASAAASLEEQASMLTQAMSVFVL 517 >RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 608 Score = 313 bits (803), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 182/283 (64%), Positives = 220/283 (77%), Gaps = 11/283 (3%) Query: 1 LFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEEL 60 L A++ M++SL +V QVR G+ I A+ +IA+GN DLS RTEQQASSLEETAS+ME+L Sbjct: 249 LLALQRMQESLQGMVGQVRTGSDAIASATQQIAAGNADLSQRTEQQASSLEETASSMEQL 308 Query: 61 MTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIA 120 VKQNAD+A+QAS LAV+AS++A +GGEVV +VV TM GI+ SSRKI DII VI+GIA Sbjct: 309 TGMVKQNADSARQASTLAVNASDIAVKGGEVVGRVVETMAGIHDSSRKIADIIGVIEGIA 368 Query: 121 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGS 180 FQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEI LI+DSV ++E G+ Sbjct: 369 FQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKTLISDSVGRVESGT 428 Query: 181 SLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVE 240 +LV +AG ++ VV +VKRVT ++ EIS AS QS GI QVN A+T MDEATQQN+ALVE Sbjct: 429 TLVAEAGTVIDEVVVAVKRVTGIMGEISAASDAQSEGIAQVNQAVTQMDEATQQNAALVE 488 Query: 241 EAAAAANSMKEQAGALSGLVATFRLDAQQARQSGYSQASAPAH 283 +AAAAA S++EQA L G VA FR ++A APA Sbjct: 489 QAAAAAMSLQEQADGLRGTVAAFR-----------TRADAPAQ 520 >RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 311 bits (798), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 169/265 (63%), Positives = 213/265 (80%) Query: 1 LFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEEL 60 L +K M+ SL IVA VR ++ AS++IA GN DLS RTEQQAS+L+ET++ M+EL Sbjct: 249 LAKLKEMQASLSGIVATVRNNAESVATASAQIAQGNQDLSHRTEQQASALQETSATMDEL 308 Query: 61 MTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIA 120 +TV NA+NA+QA+QLA AS VA++GGEVV+QVV M GIN S+KI DII VIDGIA Sbjct: 309 GSTVGNNAENARQANQLASGASSVAAEGGEVVSQVVGMMKGINDGSKKIADIIGVIDGIA 368 Query: 121 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGS 180 FQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEI LI SV Q+E+G+ Sbjct: 369 FQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAKEIKALITSSVEQVEQGT 428 Query: 181 SLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVE 240 +LV++AG TME +V +++RV+++VAEIS AS EQS G++QV A++ MDEATQQN+ALVE Sbjct: 429 TLVDRAGATMEQIVGAIQRVSNIVAEISSASAEQSSGVSQVGQAVSQMDEATQQNAALVE 488 Query: 241 EAAAAANSMKEQAGALSGLVATFRL 265 ++AAAA+S++ QA L VA F+L Sbjct: 489 QSAAAASSLQGQAQQLVQAVAVFKL 513 >RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 524 Score = 306 bits (783), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 162/235 (68%), Positives = 192/235 (81%) Query: 1 LFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEEL 60 + A+ +M+ SL +V QVR G+ +I A+ +IA+GN DLS RTEQQASSLEETAS+MEEL Sbjct: 257 MHAVASMQSSLQKMVGQVRTGSDSIASATKQIAAGNADLSQRTEQQASSLEETASSMEEL 316 Query: 61 MTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIA 120 + VKQNADNA+QAS LAV+AS+VA +GGEVV +VV TM GIN SS+KI DII VI+GIA Sbjct: 317 TSIVKQNADNARQASTLAVNASDVAVKGGEVVGRVVETMAGINGSSKKIADIIGVIEGIA 376 Query: 121 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGS 180 FQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEI ELI+DSV +++ GS Sbjct: 377 FQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKELISDSVDRVQNGS 436 Query: 181 SLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQN 235 LV +AG ++ VV +VKRVTD++ EIS AS EQS GI QVN A+ MDE TQQN Sbjct: 437 KLVAEAGTVIDEVVVAVKRVTDIMGEISAASDEQSSGIEQVNQAVNQMDEVTQQN 491 >RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 600 Score = 306 bits (783), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 175/262 (66%), Positives = 215/262 (82%) Query: 4 IKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEELMTT 63 +++M+ L+ + +R G+ +I A+ +IA+GN+DLS RTE+QASSLEETAS+MEEL + Sbjct: 252 LQDMQRGLIRTIETMRGGSDSIASATKQIAAGNMDLSQRTEEQASSLEETASSMEELTSI 311 Query: 64 VKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQT 123 VKQNADNA+QAS LAV+AS++A +GGEVV +VV TM GIN SS+KI DII VI+GIAFQT Sbjct: 312 VKQNADNARQASTLAVNASDIAVKGGEVVGRVVETMAGINDSSKKIADIIGVIEGIAFQT 371 Query: 124 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSLV 183 NILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEI ELI+DSV ++E G++LV Sbjct: 372 NILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKELISDSVGRVENGTTLV 431 Query: 184 EQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVEEAA 243 +AG ++ VV +VKRVTD++ EIS AS EQS GI QVN A+ MDE TQQN+ALVEEAA Sbjct: 432 AEAGTVIDEVVVAVKRVTDIMGEISAASDEQSSGIEQVNQAVNQMDEVTQQNAALVEEAA 491 Query: 244 AAANSMKEQAGALSGLVATFRL 265 AAA S++EQA L VA+FRL Sbjct: 492 AAAQSLEEQARLLRETVASFRL 513 >RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 513 Score = 305 bits (782), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 173/265 (65%), Positives = 210/265 (79%) Query: 1 LFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEEL 60 LFA+ M+ L ++ ++ +I A+ +IA+GN DLS RTEQQASSLEETAS+MEEL Sbjct: 249 LFAMAQMQRELTGTISHIKHSADSIASATQQIAAGNADLSQRTEQQASSLEETASSMEEL 308 Query: 61 MTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIA 120 + VKQNADNA+QAS LAV+AS+VA +GGEVV +VV TM GIN SS+KI DII VI+GIA Sbjct: 309 TSIVKQNADNARQASTLAVNASDVAVKGGEVVGRVVETMAGINDSSKKIADIIGVIEGIA 368 Query: 121 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGS 180 FQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEI ELI DSV ++ G+ Sbjct: 369 FQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKELIGDSVGRVRNGT 428 Query: 181 SLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVE 240 +LVE+AG ++ VV +VKRVTD++ EIS AS EQS GI QVN A+ MD+ TQQN+ALVE Sbjct: 429 ALVEEAGAVIDEVVVAVKRVTDIMGEISAASAEQSSGIEQVNQAVNQMDQVTQQNAALVE 488 Query: 241 EAAAAANSMKEQAGALSGLVATFRL 265 +AAAAA S++EQA L V F++ Sbjct: 489 QAAAAALSLEEQAQVLRTAVGRFQM 513 >PA0176 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseudomonas aeruginosa Length = 679 Score = 304 bits (779), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 183/280 (65%), Positives = 225/280 (80%), Gaps = 8/280 (2%) Query: 10 SLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEELMTTVKQNAD 69 SL ++ Q+R+ TI A+SEIASGN +LS+RTEQQASSLEETAS+MEEL +TVK NA+ Sbjct: 379 SLSRMLGQIREAADTINTAASEIASGNAELSARTEQQASSLEETASSMEELTSTVKLNAE 438 Query: 70 NAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQTNILALN 129 NA+QA+ LA +ASEVA+QGG VV +VV+TM IN S+RKI DII VIDGIAFQTNILALN Sbjct: 439 NARQANSLAANASEVATQGGTVVQKVVSTMSSINESARKIADIIGVIDGIAFQTNILALN 498 Query: 130 AAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSLVEQAGQT 189 AAVEAARAGEQGRGFAVVA EVR+LAQRSA AAKEI LI+DSV ++E G++LV QAGQT Sbjct: 499 AAVEAARAGEQGRGFAVVAGEVRTLAQRSAAAAKEIKTLISDSVDKVENGNTLVAQAGQT 558 Query: 190 MENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVEEAAAAANSM 249 M ++V +++RVTD+++EI+ AS EQS GI +VN+A++ MD+ TQQN+ALVEEAAAAA +M Sbjct: 559 MSDIVVAIRRVTDIMSEIAAASAEQSTGIEEVNSAVSQMDDMTQQNAALVEEAAAAAEAM 618 Query: 250 KEQAGALSGLVATFRLDAQQ-------ARQSGYSQASAPA 282 +EQAG L+ VA FRLD AR S + SAPA Sbjct: 619 QEQAGLLNQSVAVFRLDTPPSVVQLASARPSA-PRPSAPA 657 >RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 617 Score = 303 bits (776), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 174/257 (67%), Positives = 212/257 (82%) Query: 9 DSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEELMTTVKQNA 68 D L +++ Q+R G+ ++ A+ EIA+GN DLS RTE+QASSLEETAS+MEEL + VKQNA Sbjct: 359 DKLTAVLQQIRLGSDSVRSAAQEIAAGNADLSQRTEEQASSLEETASSMEELTSIVKQNA 418 Query: 69 DNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQTNILAL 128 DNA+QAS LAV+AS+VA++GG VV QVV TM GIN SS+KI DII VI+ IAFQTNILAL Sbjct: 419 DNARQASSLAVNASDVATRGGSVVGQVVQTMGGINESSKKIADIIGVIESIAFQTNILAL 478 Query: 129 NAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSLVEQAGQ 188 NAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEI LI+DSV ++ G++LV+QAG Sbjct: 479 NAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKALIHDSVDRVSNGTALVDQAGV 538 Query: 189 TMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVEEAAAAANS 248 TM +V +VKRVTD++ EIS AS+EQS GI QVN A+ MD+ TQQN+ALVE+AAAAA S Sbjct: 539 TMAEIVEAVKRVTDIMGEISAASEEQSSGIEQVNQAVNQMDQVTQQNAALVEQAAAAAES 598 Query: 249 MKEQAGALSGLVATFRL 265 ++EQA L+ V +FRL Sbjct: 599 LEEQARNLNDAVGSFRL 615