BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0092.p (297 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3334 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 350 2e-96 AGc3985 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 288 9e-78 SMa1987 [K] COG0583 Transcriptional regulator Sme Sinorhizobium ... 214 2e-55 mll3827 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 201 2e-51 CC2352 Non COG 154 3e-37 BMEI0218 [K] COG0583 Transcriptional regulator Bme Brucella meli... 145 1e-34 AGc354 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 134 4e-31 SMc00780 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 132 8e-31 PA3711 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 122 1e-27 PA1138 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 120 4e-27 >RSc3334 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 298 Score = 350 bits (898), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 176/295 (59%), Positives = 219/295 (74%) Query: 1 MADIEPNWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIENLESTLGLKLFVRSFDGF 60 M + EP WE YR+FL V+ GSLS A R +GLTQPT GRH++ LE LG LF+R+ G Sbjct: 1 MVNPEPGWELYRTFLAVVREGSLSGAARALGLTQPTAGRHVDALERALGFALFIRTQQGL 60 Query: 61 SPTDAALELKPYAAAIAANSAALRRAASSQGKEVRGTVRLTASEVISVEVLPPILAALRH 120 SPT+AAL L+PYA ++ + SAAL RAASSQG+ VRGTVR+TASEV++ EVLP ILA L Sbjct: 61 SPTEAALALRPYAESLESTSAALLRAASSQGEGVRGTVRITASEVVTAEVLPAILADLHA 120 Query: 121 RHPELRVELVLSNKADDLLQREADIAVRMFRPAQDALVAKRLGSIELGLHAHQSYLAVHG 180 +P L +ELV SN+ +DLL+R+ADIAVRM RP+Q LVA+ +G IELG+HAH+ YL G Sbjct: 121 AYPGLILELVPSNRLEDLLRRDADIAVRMQRPSQGVLVARHIGGIELGVHAHRRYLERRG 180 Query: 181 APKSVDALADHTLIGFDQESAYVRNVLKQIPWLSRAALALRTDSDLAQLAAIRAGFGIGI 240 P ++D LA H LIG+D+E+A++R + Q+PW+ R ALRTDSDLA LAA+RAGFGIGI Sbjct: 181 TPATLDDLAGHALIGYDKETAFIRGMKGQVPWMRRDRFALRTDSDLAGLAALRAGFGIGI 240 Query: 241 CQVALAARDDALVRLLPRQFALKMETWVAMHEDLRASPRCAVTFAALVAGLGAYI 295 CQV LA RD LVRL A ++TW+AMHEDLR S RC V F AL AGL Y+ Sbjct: 241 CQVGLARRDPDLVRLFADDVAPVLDTWLAMHEDLRESLRCRVVFEALAAGLLRYV 295 >AGc3985 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 314 Score = 288 bits (738), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 148/297 (49%), Positives = 211/297 (71%), Gaps = 8/297 (2%) Query: 7 NWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIENLESTLGLKLFVRSFDGFSPTDAA 66 +W++YR+FL VL GSLSAA RE+G+TQPT GRHI LE +G LF+RS G PT+AA Sbjct: 8 SWDFYRTFLSVLRDGSLSAAARELGITQPTAGRHIGALEEAVGFPLFIRSPHGLMPTEAA 67 Query: 67 LELKPYAAAIAANSAALRRAASSQGKEVRGTVRLTASEVISVEVLPPILAALRHRHPELR 126 L L+PYA +AA +AAL RAAS + ++ GTVR++AS++I VE+LPPI+A ++ HP L Sbjct: 68 LALRPYAENLAATAAALMRAASGEVGKIEGTVRISASDIIGVEMLPPIVALMQEVHPRLE 127 Query: 127 VELVLSNKADDLLQREADIAVRMFRPAQDALVAKRLGSIELGLHAHQSYLAVHGAPKSVD 186 +EL LS+ +DLL+READIA+RM P QDA+V + +G+ LG HA + YLA G PK+++ Sbjct: 128 IELSLSDTLEDLLRREADIAIRMTEPQQDAIVMRYIGNFRLGFHATRDYLAKAGIPKAME 187 Query: 187 ALADHTLIGFDQESAYVRNVLKQ-------IPWLSRAALALRTDSDLAQLAAIRAGFGIG 239 L +H ++GFD+++ ++R +++ IP + + +R DS+LAQLA IRA GIG Sbjct: 188 ELNEHRMVGFDRKTPFIRAAIQRMRSLDPDIPDIEDISFEIRADSNLAQLAMIRASAGIG 247 Query: 240 ICQVALAARDDALVRLLPRQFALKMETWVAMHEDLRASPRCAVTFAALVAGLGAYIR 296 +CQ+ LA +D LV +LP + + TWVAMHE+L+ SPRC F+ALV GL A+++ Sbjct: 248 VCQIGLARKDPRLVHVLP-DIDIPLHTWVAMHENLKTSPRCRAVFSALVEGLKAHLK 303 >SMa1987 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 279 Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/284 (46%), Positives = 167/284 (58%), Gaps = 11/284 (3%) Query: 18 LETGSLSAAGREMGLTQPTVGRHIENLESTLGLKLFVRSFDGFSPTDAALELKPYAAAIA 77 +ETGSLSAA R MGL+QPTV IE LE+ LG LF RS G PT A + A A+A Sbjct: 1 METGSLSAAARRMGLSQPTVRARIEGLEAALGTALFTRSVHGLVPTPTAEAMATPARAMA 60 Query: 78 ANSAALRRAASSQGKEVRGTVRLTASEVISVEVLPPILAALRHRHPELRVELVLSNKADD 137 S A+ RAAS+ G VRL+ SE + +EVLPP+L +LR +HP+L VE LSN D Sbjct: 61 HASEAMLRAASADSATAAGRVRLSVSEFVGIEVLPPMLRSLRDKHPQLTVEFELSNARAD 120 Query: 138 LLQREADIAVRMFRPAQDALVAKRLGSIELGLHAHQSYLAVHGAPKSVDALADHTLIGFD 197 LL ++ D+AVRM P Q ALVAK++ I LGL AH+ YLAV+G P + + DH IG D Sbjct: 121 LLDQQVDVAVRMHPPEQSALVAKKVPLIPLGLFAHRDYLAVYGRPATKAEVRDHLFIGPD 180 Query: 198 QES---AYVRNVLKQIP--WLSRAALALRTDSDLAQLAAIRAGFGIGICQVALAARDDAL 252 + A + +P W++ RTDS AQLA RAG GI + Q+ AAR L Sbjct: 181 RNRGDLAVAAQIAGSVPVSWIA------RTDSHPAQLALARAGLGIAVAQIPAAARYPEL 234 Query: 253 VRLLPRQFALKMETWVAMHEDLRASPRCAVTFAALVAGLGAYIR 296 R+LP ++ TW+ HE+LR PR A F LV +Y R Sbjct: 235 ERVLPDVELPQLPTWIVTHENLRRLPRVAALFDHLVEAFESYGR 278 >mll3827 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 302 Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 118/280 (42%), Positives = 170/280 (60%), Gaps = 4/280 (1%) Query: 1 MADIEPNWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIENLESTLGLKLFVRSFDGF 60 MADI +W +SF+ V ETGSLSAA R++ +QPT+GRHI LE LG+ LF R G+ Sbjct: 1 MADI--DWNLIKSFVTVAETGSLSAAARKLSASQPTLGRHIGELEQALGVTLFRRGRSGY 58 Query: 61 SPTDAALELKPYAAAIAANSAALRRAASSQGKEVRGTVRLTASEVISVEVLPPILAALRH 120 + T+A L A++ ++A R A + + GTVR+ ASEV++ VLP + A L Sbjct: 59 ALTEAGATLFERGKAVSEQASAFSRLALGSVEAIEGTVRIAASEVVAAYVLPDMTARLGV 118 Query: 121 RHPELRVELVLSNKADDLLQREADIAVRMFRPAQDALVAKRLGSIELGLHAHQSYLAVHG 180 P + VE+V SN+ ++LL+R+ADIA+RM +PAQ+ LVA+++ IEL A SYL G Sbjct: 119 EEPGIEVEIVASNQVENLLRRDADIAIRMVKPAQNELVARKVCDIELCACAAISYLDRRG 178 Query: 181 APKSVDALADHTLIGFDQESAYVRNVLK-QIPWLSRAALALRTDSDLAQLAAIRAGFGIG 239 P L DH LIGFD+ +R + IP ++R++ R D+ + A+RAG GIG Sbjct: 179 RPVGPADLVDHPLIGFDRSDEMIRGFTQFGIP-VTRSSFRFRADNQVVLWEAVRAGNGIG 237 Query: 240 ICQVALAARDDALVRLLPRQFALKMETWVAMHEDLRASPR 279 + Q LA RD + ++LP + W+AMH D+R+S R Sbjct: 238 LGQEPLADRDPLVEKVLPGLPLPSLPVWLAMHRDVRSSVR 277 >CC2352 Non COG Length = 302 Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 152/288 (52%), Gaps = 4/288 (1%) Query: 7 NWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIENLESTLGLKLFVRSFDGFSPTDAA 66 +W R+FL E GS SAA R +GL+QPT+ R I+ LE+ G+ LF R+ G + T Sbjct: 9 DWNRARAFLVAAEEGSFSAAARALGLSQPTLSRQIDALEAEWGVVLFERAGRGLALTSGG 68 Query: 67 LELKPYAAAIAANSAALRRAASSQGKEVRGTVRLTASEVISVEVLPPILAALRHRHPELR 126 LE+ + ++ + A S Q + + G + ++ASEV + +LPPI++ LR +P L Sbjct: 69 LEVLQAMRGMGEAASLVSLAVSGQAEAIAGPIAISASEVNAAHLLPPIVSELRATYPGLE 128 Query: 127 VELVLSNKADDLLQREADIAVRMFRPAQDALVAKRLGSIELGLHAHQSYLAVHGAPKSVD 186 +E+V +N DL +READIA+R Q LV +++ ++A Y+A G P++ Sbjct: 129 IEVVATNAPSDLRRREADIAIRNMVSTQPELVCRKIRDDHAFMYATPDYIAKLGQPQTFA 188 Query: 187 ALADHTLIGFDQESAYVR--NVLKQIPWLSRAALALRTDSDLAQLAAIRAGFGIGICQVA 244 ALAD +GF +R N L +P SR + D+ L Q ++ G GIG+ Sbjct: 189 ALADAEFLGFAATDVLIRALNGLG-VPVSSR-NFPVVCDNHLVQWELVKRGVGIGLITAD 246 Query: 245 LAARDDALVRLLPRQFALKMETWVAMHEDLRASPRCAVTFAALVAGLG 292 + + A+ R+LP + + W+ H +L+ S R V F L LG Sbjct: 247 IGDAEPAVRRVLPEMAPIIVPMWLVAHRELKTSLRVRVVFDHLAKSLG 294 >BMEI0218 [K] COG0583 Transcriptional regulator Bme Brucella melitensis Length = 308 Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 104/286 (36%), Positives = 146/286 (51%), Gaps = 4/286 (1%) Query: 7 NWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIENLESTLGLKLFVRSFDGFSPTDAA 66 NW+ R FL V +G + A R +GL TV R + LE+ L L R +G + T A Sbjct: 17 NWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHAG 76 Query: 67 LELKPYAAAIAANSAALRRAASSQGKEVRGTVRLTASEVISVEVLPPILAALRHRHPELR 126 E A + A + R + V GTVR+ A + V L P LA L ++P+L Sbjct: 77 EEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDLT 136 Query: 127 VELVLSNKADDLLQREADIAVRMFRPAQDALVAKRLGSIELGLHAHQSYLAVHGAPKSVD 186 ++LV ++ L +READIA+ + RP Q LVA+RL L L+AH+SYL + PKS + Sbjct: 137 IQLVPVPRSFSLSRREADIAITVERPDQGRLVARRLVDYTLCLYAHRSYLEENSTPKSPE 196 Query: 187 ALADHTLIGFDQESAYVRNVLKQIPWLSRA-ALALRTDSDLAQLAAIRAGFGIGICQVAL 245 L H LIG+ E + L P +SR A S L Q+ A+RAG GIGI + Sbjct: 197 DLNRHRLIGY-VEDLVINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGIGILHSFI 255 Query: 246 AARDDALVRLLPRQFALKMETWVAMHEDLRASPRCAVTFAALVAGL 291 A D LV +LP + + W+A HE R + R +AL++ L Sbjct: 256 ACADPDLVPVLPDRV-IHRAYWLAYHESAR-TLRRVTAVSALISEL 299 >AGc354 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 293 Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/272 (32%), Positives = 137/272 (50%), Gaps = 7/272 (2%) Query: 7 NWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIENLESTLGLKLFVRSFDGFSPTDAA 66 NW+ R FL V +G + AA + +GL T+ R + LE L +LF+R +G T+ Sbjct: 2 NWDDVRIFLAVARSGQILAASKRLGLNHATLSRRLTLLEQALKTQLFIRRTNGCEMTE-- 59 Query: 67 LELKPYAAAIAANSAALRRAASSQGK---EVRGTVRLTASEVISVEVLPPILAALRHRHP 123 E + + A + A ++ G+ V GTVR+ A + + V L P L L R+P Sbjct: 60 -EGQRFLGAAERMETEMLNAQANLGRVDTAVAGTVRIGAPDGLGVSFLAPRLGRLTARYP 118 Query: 124 ELRVELVLSNKADDLLQREADIAVRMFRPAQDALVAKRLGSIELGLHAHQSYLAVHGAPK 183 +L+++LV ++ L QREADIA+ + RP Q L+ +L LGL+A YLA HG P Sbjct: 119 DLKIQLVPVPRSFSLSQREADIAITIERPEQGRLMFSKLTDYSLGLYASADYLADHGTPD 178 Query: 184 SVDALADHTLIGFDQESAYVRNVLKQIPWLSRAALALRTDSDLAQLAAIRAGFGIGICQV 243 V+AL H IG+ ++ + ++ + A S Q A+R+G GIGI Sbjct: 179 DVEALKRHRRIGYVEDLIFSPSLNYTGEIMRDWDAAFEISSATGQTEAVRSGAGIGILHN 238 Query: 244 ALAARDDALVRLLPRQFALKMETWVAMHEDLR 275 +A + L+R++P + W A HE R Sbjct: 239 YIAGQYPELMRIMP-HLGISRSYWTAYHESAR 269 >SMc00780 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 293 Score = 132 bits (333), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 90/272 (33%), Positives = 136/272 (50%), Gaps = 7/272 (2%) Query: 7 NWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIENLESTLGLKLFVRSFDGFSPTDAA 66 NW+ R FL V TG + AA + +G+ T+ R + LE L KL +R +G T Sbjct: 2 NWDDVRVFLAVARTGQILAASKRLGINHATLSRRVTALEEELKAKLLIRRPNGCELT--- 58 Query: 67 LELKPYAAAIAANSAALRRAASSQGK---EVRGTVRLTASEVISVEVLPPILAALRHRHP 123 E + + AA + A S G+ + GTVR+ A + V L P L L R+P Sbjct: 59 AEGEVFFAAAERMETEMLAAQSQVGRIDTAIAGTVRIGAPDGFGVSFLAPRLGRLTARYP 118 Query: 124 ELRVELVLSNKADDLLQREADIAVRMFRPAQDALVAKRLGSIELGLHAHQSYLAVHGAPK 183 EL+++LV ++ L QREADIA+ + RP Q LV+ +L LGL+A YL +G P Sbjct: 119 ELKLQLVPVPRSFSLSQREADIAITIERPEQGRLVSSKLTDYTLGLYASAEYLGRYGTPG 178 Query: 184 SVDALADHTLIGFDQESAYVRNVLKQIPWLSRAALALRTDSDLAQLAAIRAGFGIGICQV 243 +VD L +H IG+ ++ + ++ + + S + Q A+R+ GIGI Sbjct: 179 TVDDLKNHRRIGYVEDLIFTPSLNFSTEVMRSWDASFEISSAMGQTEAVRSSAGIGILHN 238 Query: 244 ALAARDDALVRLLPRQFALKMETWVAMHEDLR 275 +A + LVRLLP + ++ W HE R Sbjct: 239 YIARQYPELVRLLPDR-TIRRAYWTTYHESAR 269 >PA3711 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 301 Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/282 (31%), Positives = 141/282 (50%), Gaps = 2/282 (0%) Query: 7 NWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIENLESTLGLKLFVRSFDGFSPTDAA 66 +W R FL++ +G L A + +G T TV RHIEN+E LG +LF + G+ T A Sbjct: 3 DWNDLRFFLELQRSGRLLTAAKRLGTTHATVARHIENIERDLGTQLFAQHTGGYQLTPAG 62 Query: 67 LELKPYAAAIAANSAALRRAASSQGKEVRGTVRLTASEVISVEVLPPILAALRHRHPELR 126 L +A A+ N+A L + SQ G +R+ +E + L P LA L +P L Sbjct: 63 QALLKHAEAME-NTALLAQEEMSQSISPLGQIRIGVTEGLGSVFLAPRLAQLMRHYPGLE 121 Query: 127 VELVLSNKADDLLQREADIAVRMFRPAQDALVAKRLGSIELGLHAHQSYLAVHGAPKSVD 186 VELV + + READIA+ + RP+ D ++ + L L L A +YL + D Sbjct: 122 VELVSVPRFVSITNREADIAISLDRPSADLVITRLLTRYRLALFASPAYLEQAPPLRDRD 181 Query: 187 ALADHTLIGFDQESAYVRNVLKQIPWLSRAALALRTDSDLAQLAAIRAGFGIGICQVALA 246 L H IG+ + + + ++ + + R+ S +AQ A +AG G+ I + Sbjct: 182 DLGRHQWIGYVDDLLFSQELMFHHSFCRHPQVVFRSTSVVAQQQAAQAGIGLAILPHFMG 241 Query: 247 ARDDALVRLLPRQFALKMETWVAMHEDLRASPRCAVTFAALV 288 +RD LV +LP + +++ E W++ +L S R V + L+ Sbjct: 242 SRDPLLVPVLPEE-SIQREYWMSTRRELHRSVRLRVVWDFLL 282 >PA1138 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 291 Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 87/287 (30%), Positives = 142/287 (49%), Gaps = 10/287 (3%) Query: 7 NWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIENLESTLGLKLFVRSFDGFSPT--- 63 NW+ R FL + +L A R + + Q TVGR + +LE+ LG LF+R+ G+ T Sbjct: 2 NWDDTRVFLALCREHTLRGAARALHVDQATVGRRLASLEAALGSTLFLRTSSGYLLTPAG 61 Query: 64 DAALELKPYAAAIAANSAALRRAASSQGKEVRGTVRLTASEVISVEVLPPILAALRHRHP 123 +AA EL A + ++ L R + G VRL+ ++ ++V+ + P LA L HP Sbjct: 62 EAAFEL---AEKMERSALELLRRTRGMDHRLSGEVRLSTTDSLAVDFVLPALARLHLEHP 118 Query: 124 ELRVELVLSNKADDLLQREADIAVRMFRPAQDALVAKRLGSIELGLHAHQSYLAVHGAPK 183 ++RV L ++ DL +RE DIA+R RP L+ ++L S +GL A YL +G P Sbjct: 119 DIRVLLDSASAVVDLPKRETDIAIRTLRPENPDLILRKLASWPMGLFASADYLRRNGVPV 178 Query: 184 SVDALADHTLIGFDQESAYVRNVLKQIPWLSRAALALRTDSDLAQLAAIRAGFGIGICQV 243 + H L+ ++ R + + + + +S++ A+ G+G+C++ Sbjct: 179 PGERFRGHDLVMYEPYWHSQRELTLGGEPIRDGRVVIAVNSNMMVRQAL--ARGLGLCEL 236 Query: 244 AL-AARDDALVRLLP-RQFALKMETWVAMHEDLRASPRCAVTFAALV 288 L D LVR+ P R+ E W+ H+DLR + R LV Sbjct: 237 PLYMGERDGLVRVWPQRERRRPYEVWMVTHKDLRHTARVRAVIERLV 283