BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0080.p (147 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc01160 [K] COG1959 Predicted transcriptional regulator Sme Sin... 141 4e-34 AGc402 [K] COG1959 Predicted transcriptional regulator Atu Agrob... 132 3e-31 PA4169 [K] COG1959 Predicted transcriptional regulator Pae Pseud... 118 5e-27 AGl2343 [K] COG1959 Predicted transcriptional regulator Atu Agro... 96 2e-20 RSp0526 [K] COG1959 Predicted transcriptional regulator Rso Rals... 85 5e-17 BS_ywnA [K] COG1959 Predicted transcriptional regulator Bsu Baci... 73 2e-13 BH0306 [K] COG1959 Predicted transcriptional regulator Bha Bacil... 58 8e-09 >SMc01160 [K] COG1959 Predicted transcriptional regulator Sme Sinorhizobium meliloti Length = 152 Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 77/135 (57%), Positives = 95/135 (70%), Gaps = 3/135 (2%) Query: 1 MKRSDRLSIALHILLHMGQRTDAPMTSEEIAGWVNTNPVVIRRTFAGLREAGIVTSTKGH 60 MKR RLSI LH LLHM +R +TSEE+A ++TNPVV+RRT AGLREAG+V S +GH Sbjct: 1 MKRDSRLSITLHALLHMAERE--TITSEELAACLSTNPVVVRRTMAGLREAGLVRSERGH 58 Query: 61 GGGWSLARPMDQISLLQVQQALGERLV-TLGAREESPGCLVEIAVNRALDDVMEEANRIL 119 GGGWSL R + ISL V ALGE V +G R E+PGC+VE AVN A+D + +A +L Sbjct: 59 GGGWSLVRDLATISLADVHAALGEPAVFAIGNRTEAPGCVVEQAVNAAMDGALRDAEALL 118 Query: 120 DQRLAGITLAALAQD 134 QRL I+LA L+ D Sbjct: 119 MQRLERISLADLSND 133 >AGc402 [K] COG1959 Predicted transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 152 Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 69/135 (51%), Positives = 92/135 (68%), Gaps = 2/135 (1%) Query: 1 MKRSDRLSIALHILLHMGQRTDAPMTSEEIAGWVNTNPVVIRRTFAGLREAGIVTSTKGH 60 M+ RLS LHIL+HM ++ + TSE IA + TNPVV+RRT AGLRE G V+S KGH Sbjct: 1 MRHDTRLSRVLHILIHM-EKHEGAATSENIAAMLQTNPVVVRRTMAGLREHGYVSSEKGH 59 Query: 61 GGGWSLARPMDQISLLQVQQALGE-RLVTLGAREESPGCLVEIAVNRALDDVMEEANRIL 119 GGGW LA+P+ +I+LL + +ALG L ++G ++P C++E AVN AL D M EA IL Sbjct: 60 GGGWVLAQPLTEITLLDIYRALGAPELFSIGLAGDNPNCVIEQAVNAALFDAMNEAENIL 119 Query: 120 DQRLAGITLAALAQD 134 R ITL+ LA++ Sbjct: 120 LSRFGSITLSTLAEE 134 >PA4169 [K] COG1959 Predicted transcriptional regulator Pae Pseudomonas aeruginosa Length = 142 Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 64/136 (47%), Positives = 84/136 (61%), Gaps = 2/136 (1%) Query: 1 MKRSDRLSIALHILLHMGQRTDAPMTSEEIAGWVNTNPVVIRRTFAGLREAGIVTSTKGH 60 M+ RLS LH+L+HM R + P TSE I + TNPVV+RRT A L+ G V+S KGH Sbjct: 1 MRNDTRLSRMLHVLIHMA-RHEGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGH 59 Query: 61 GGGWSLARPMDQISLLQVQQALG-ERLVTLGAREESPGCLVEIAVNRALDDVMEEANRIL 119 GGW LA+P+ I+LL + QALG + +G + P CLVE AVN AL + E A +L Sbjct: 60 RGGWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPECLVEQAVNEALGEAFEAAQALL 119 Query: 120 DQRLAGITLAALAQDV 135 +RL +TL LA + Sbjct: 120 LERLGSVTLEQLASEF 135 >AGl2343 [K] COG1959 Predicted transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 160 Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/134 (44%), Positives = 79/134 (58%), Gaps = 2/134 (1%) Query: 1 MKRSDRLSIALHILLHMGQRTDAPMTSEEIAGWVNTNPVVIRRTFAGLREAGIVTSTKGH 60 MK RL+ LH+L+HMG TSE IA +NTNPVV+RRT LRE+GIV S G Sbjct: 22 MKTDGRLARMLHVLVHMGL-LGGRETSERIAQMLNTNPVVVRRTLGALRESGIVVSEGGR 80 Query: 61 GGGWSLARPMDQISLLQVQQALGE-RLVTLGAREESPGCLVEIAVNRALDDVMEEANRIL 119 GGGW L R +DQI++L VQ+AL E +++ ++ P C VE A N L+ A L Sbjct: 81 GGGWKLIRSLDQITVLDVQRALVEGQMLPAPLSKDHPNCPVERASNAVLERAHCLAEAAL 140 Query: 120 DQRLAGITLAALAQ 133 + TLA +A+ Sbjct: 141 RTAYSETTLAQIAE 154 >RSp0526 [K] COG1959 Predicted transcriptional regulator Rso Ralstonia solanacearum Length = 143 Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 54/137 (39%), Positives = 76/137 (55%), Gaps = 2/137 (1%) Query: 1 MKRSDRLSIALHILLHMGQRTDAPMTSEEIAGWVNTNPVVIRRTFAGLREAGIVTSTKGH 60 M S R ++A+HIL + + P+ S IAG V TNP +IRR A L EAG VTS G Sbjct: 1 MSTSSRFAVAVHILTLLASAGE-PVPSSLIAGSVGTNPALIRRLVALLAEAGFVTSQMGA 59 Query: 61 GGGWSLARPMDQISLLQVQQAL-GERLVTLGAREESPGCLVEIAVNRALDDVMEEANRIL 119 GG +LARP D+I+LL V +A+ L+ L + +P C V + L+ V A + Sbjct: 60 SGGSTLARPADRITLLDVFRAVESPVLIALPHSQPNPACEVGREITGVLERVTARAQSAM 119 Query: 120 DQRLAGITLAALAQDVG 136 + LA T+A + +VG Sbjct: 120 EAELAAQTIAGMLTEVG 136 >BS_ywnA [K] COG1959 Predicted transcriptional regulator Bsu Bacillus subtilis Length = 133 Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 12/139 (8%) Query: 4 SDRLSIALHIL--LHMGQRTDAPMTSEEIAGWVNTNPVVIRRTFAGLREAGIVTSTKGHG 61 + RL++A+HIL + M ++T +SE IA VNTNPVV+RR + L++A I+TS G Sbjct: 3 NSRLAVAIHILSLISMDEKT----SSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVP 58 Query: 62 GGWSLARPMDQISLLQVQQALGERLVTLGAREE-SPGCLVEIAVNRALDDVMEEANRILD 120 G P D ISLL+V +A+ ++ E +P C V + ALD+ E R ++ Sbjct: 59 GASLKKDPAD-ISLLEVYRAVQKQEELFAVHENPNPKCPVGKKIQNALDETFESVQRAME 117 Query: 121 QRLAGITLAALAQDVGLHF 139 LA +L +DV H Sbjct: 118 NELASKSL----KDVMNHL 132 >BH0306 [K] COG1959 Predicted transcriptional regulator Bha Bacillus halodurans Length = 143 Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 6/131 (4%) Query: 4 SDRLSIALHILLHMGQRTDAPMTSEEIAGWVNTNPVVIRRTFAGLREAGIVTSTKGHGGG 63 S R SIA+HIL + + T + IAG VN+NPV++R L++A ++ G GG Sbjct: 5 SSRFSIAVHILTFIASVREG-CTGDFIAGSVNSNPVIVRNIMGMLKKADLIGVRPGVGGA 63 Query: 64 WSLARPMDQISLLQVQQA---LGERLVTLGAREESPGCLVEIAVNRALDDVMEEANRILD 120 + L + D+I+LL V +A +G+ + G C V + L + +++A ++ Sbjct: 64 Y-LKKDADEITLLDVYRAVDVIGDDQL-FGFHNPKIECEVGRIIENTLREELKQAQEAME 121 Query: 121 QRLAGITLAAL 131 QRL +T+ L Sbjct: 122 QRLQLVTIQQL 132