BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0060.p (680 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1094 [N] COG1345 Flagellar capping protein Pae Pseudomonas aer... 154 9e-37 ZfliD [N] COG1345 Flagellar capping protein EcZ Escherichia coli... 125 3e-28 ECs2663 [N] COG1345 Flagellar capping protein Ecs Escherichia co... 125 3e-28 fliD [N] COG1345 Flagellar capping protein Eco Escherichia coli K12 123 2e-27 YPO1841 [N] COG1345 Flagellar capping protein Ype Yersinia pestis 112 3e-24 STM1960 [N] COG1345 Flagellar capping protein Sty Salmonella typ... 102 3e-21 VC2140 [N] COG1345 Flagellar capping protein Vch Vibrio cholerae 95 5e-19 lin0715 [N] COG1345 Flagellar capping protein Lin Listeria innocua 82 5e-15 jhp0689 [N] COG1345 Flagellar capping protein jHp Helicobacter p... 74 1e-12 HP0752 [N] COG1345 Flagellar capping protein Hpy Helicobacter py... 72 4e-12 >PA1094 [N] COG1345 Flagellar capping protein Pae Pseudomonas aeruginosa Length = 474 Score = 154 bits (388), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 122/360 (33%), Positives = 180/360 (50%), Gaps = 41/360 (11%) Query: 346 RFSQGAVNLSVGARTISLKPASATAGAAPALADVARAINEA--KAGVSATVQREGQGDKA 403 +F+ G +N+SVG + PA + LA + AIN+A +AGVSAT+ + G Sbjct: 120 KFNSGTLNISVGDTKL---PAITVDSSNNTLAGMRDAINQAGKEAGVSATIITDNSG--- 173 Query: 404 VERLVLSAS----GSD---PVSLRGSGDYAVLA--------------ASAMGQLQKPQDA 442 RLVLS++ G D VS GSG L+ +A G + K + Sbjct: 174 -SRLVLSSTKTGDGKDIKVEVSDDGSGGNTSLSQLAFDPATAPKLSDGAAAGYVTKAANG 232 Query: 443 RLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKLTLAISNDSSGVGAAVNSFVNAFN 502 +++DG+ + SN++ D I GV+ ++ T A +TL +S D +GV V FV A+N Sbjct: 233 EITVDGLKRSIASNSVSDVIDGVSFDVKAVTEAGKPITLTVSRDDAGVKDNVKKFVEAYN 292 Query: 503 TLAKAMAEMTRQAPAKVRGQAGEQ-----GPLAGESMVRALTGELRNAVLASMPGNALGS 557 TL K + E T V + GE G L G++ VRAL +R+ ++AS ++ + Sbjct: 293 TLTKFINEQT------VVTKVGEDKNPVTGALLGDASVRALVNTMRSELIASNENGSVRN 346 Query: 558 LTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFAGKEGLVARTRSLLDKVLGEQGLL 617 L A+G+ KDGTL++D +L KA +FE VA F G GL R + QG+L Sbjct: 347 LAALGITTTKDGTLEIDEKKLDKAISADFEGVASYFTGDTGLAKRLGDKMKPYTDAQGIL 406 Query: 618 AGKTRGLQGSLKIVSDQQAAARARLANLRDSYTNQFNRLNVTLSKMQASQNYLTQQLARL 677 +T LQ +L V Q+A RLA L++ T QFN L+ +M Q +T LA L Sbjct: 407 DQRTTTLQKTLSNVDTQKADLAKRLAALQEKLTTQFNLLSAMQDEMTKRQKSITDNLASL 466 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 90/300 (30%), Positives = 150/300 (50%), Gaps = 42/300 (14%) Query: 8 ISTSAGPLDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTYQNALAEL 67 IS G D +LVN++V++E ++ LA+ + ++A G+ +A++ +Q AL L Sbjct: 4 ISIGVGSTDYTDLVNKMVNLEGAAKTNQLATLEKTTTTRLTALGQFKSAISAFQTALTAL 63 Query: 68 TA-AKFSAQKAAVSNTG--RSSDGKSGNDAVSADINTDASTKAQAQII--QSAGFASGHL 122 + A F A+ A SN ++S +S AV+ ++ A + I Q+ + Sbjct: 64 NSNAVFMARTAKSSNEDILKASATQS---AVAGTYQIQVNSLATSSKIALQAIADPANAK 120 Query: 123 FKAGDSVAIKVGEAS-PSFITLKADATINGLRDTINAA--RAGVTASVVRDDAGDHLVLE 179 F +G ++ I VG+ P+ ++ T+ G+RD IN A AGV+A+++ D++G LVL Sbjct: 121 FNSG-TLNISVGDTKLPAITVDSSNNTLAGMRDAINQAGKEAGVSATIITDNSGSRLVLS 179 Query: 180 SNTAGTSKLLKVRA-------NNSLSAISFD---AQQSRPGAMTQTQAARDATSAAPGSY 229 S G K +KV N SLS ++FD A + GA AA T AA G Sbjct: 180 STKTGDGKDIKVEVSDDGSGGNTSLSQLAFDPATAPKLSDGA-----AAGYVTKAANGE- 233 Query: 230 AISVEQLAQSHKLSS-AGIAPGSTFDLGVLAIKAGSGSTTLIKPASNTL----AGVRDAI 284 I+V+ L +S +S + + G +FD+ + +AG KP + T+ AGV+D + Sbjct: 234 -ITVDGLKRSIASNSVSDVIDGVSFDVKAVT-EAG-------KPITLTVSRDDAGVKDNV 284 >ZfliD [N] COG1345 Flagellar capping protein EcZ Escherichia coli O157:H7 EDL933 Length = 465 Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 100/321 (31%), Positives = 162/321 (50%), Gaps = 23/321 (7%) Query: 372 AAPALADVARAINEAKAGVSATVQREGQGDKAV----------ERLVLSASGSDPV-SLR 420 A +L+ + AIN AKAGVSA++ G GD + + LS SG D + S Sbjct: 143 ANSSLSGIRDAINNAKAGVSASIINVGNGDYRLSVTSNDTGLDNAMTLSVSGDDALQSFM 202 Query: 421 GSGDYAVLAAS-AMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKL 479 G Y A+S M Q+A+L+++ VAI +SNTI DA+ +TLNLN T T Sbjct: 203 G---YDASASSNGMEVSVAAQNAQLTVNNVAIENSSNTISDALENITLNLNDVT--TGNQ 257 Query: 480 TLAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQ--APAKVRGQAGEQGPLAGESMVRA 537 TL I+ D+S A+ +VNA+N+L + +T+ A Q+ G L G+S +R Sbjct: 258 TLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGDSTLRT 317 Query: 538 LTGELRNAVLASMPGNALGSLTAIGVGFK-KDGTLDLDSARLAKAGERNFEAVAQLFAG- 595 + +L++ + ++ ++ +L IG+ DG L+LD+ +L A +++ V L G Sbjct: 318 IQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGD 377 Query: 596 --KEGLVARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARLANLRDSYTNQF 653 K G+ S L L G++ T G+ +L ++ AA R+ Y QF Sbjct: 378 GKKTGITTTIGSNLTSWLSTTGIIKAATDGVSKTLNKLTKDYNAASDRIDAQVARYKEQF 437 Query: 654 NRLNVTLSKMQASQNYLTQQL 674 +L+V ++ + ++ +YLTQQ Sbjct: 438 TQLDVLMTSLNSTSSYLTQQF 458 Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 121/217 (55%), Gaps = 17/217 (7%) Query: 15 LDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTYQNALAELTAAK-FS 73 LD++++++ L + + K+ LTP++++ SF A +SAYG L +ALTT+Q A L+ A FS Sbjct: 13 LDLSSILDSLTAAQ-KATLTPISNQQSSFTAKLSAYGTLKSALTTFQTANTALSKADLFS 71 Query: 74 AQKAAVSNTGRSSDGKSGNDAVSADINTDASTKAQAQIIQSAGFASGHL--FKAGDS-VA 130 A S+T S +GN A++ + AQAQ + + DS + Sbjct: 72 ----ATSSTTAFSATTAGN-AIAGKYTISVTHLAQAQTLTTRTTRDDTKTAIATSDSKLT 126 Query: 131 IKV-GEASPSFITLK-ADATINGLRDTINAARAGVTASVVRDDAGDH-LVLESNTAG--T 185 I+ G+ P I + A+++++G+RD IN A+AGV+AS++ GD+ L + SN G Sbjct: 127 IQQGGDKDPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGDYRLSVTSNDTGLDN 186 Query: 186 SKLLKVRANNSL-SAISFDAQQSRPGAMTQTQAARDA 221 + L V +++L S + +DA S G M + AA++A Sbjct: 187 AMTLSVSGDDALQSFMGYDASASSNG-MEVSVAAQNA 222 >ECs2663 [N] COG1345 Flagellar capping protein Ecs Escherichia coli O157:H7 Length = 465 Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 100/321 (31%), Positives = 162/321 (50%), Gaps = 23/321 (7%) Query: 372 AAPALADVARAINEAKAGVSATVQREGQGDKAV----------ERLVLSASGSDPV-SLR 420 A +L+ + AIN AKAGVSA++ G GD + + LS SG D + S Sbjct: 143 ANSSLSGIRDAINNAKAGVSASIINVGNGDYRLSVTSNDTGLDNAMTLSVSGDDALQSFM 202 Query: 421 GSGDYAVLAAS-AMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKL 479 G Y A+S M Q+A+L+++ VAI +SNTI DA+ +TLNLN T T Sbjct: 203 G---YDASASSNGMEVSVAAQNAQLTVNNVAIENSSNTISDALENITLNLNDVT--TGNQ 257 Query: 480 TLAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQ--APAKVRGQAGEQGPLAGESMVRA 537 TL I+ D+S A+ +VNA+N+L + +T+ A Q+ G L G+S +R Sbjct: 258 TLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGDSTLRT 317 Query: 538 LTGELRNAVLASMPGNALGSLTAIGVGFK-KDGTLDLDSARLAKAGERNFEAVAQLFAG- 595 + +L++ + ++ ++ +L IG+ DG L+LD+ +L A +++ V L G Sbjct: 318 IQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGD 377 Query: 596 --KEGLVARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARLANLRDSYTNQF 653 K G+ S L L G++ T G+ +L ++ AA R+ Y QF Sbjct: 378 GKKTGITTTIGSNLTSWLSTTGIIKAATDGVSKTLNKLTKDYNAASDRIDAQVARYKEQF 437 Query: 654 NRLNVTLSKMQASQNYLTQQL 674 +L+V ++ + ++ +YLTQQ Sbjct: 438 TQLDVLMTSLNSTSSYLTQQF 458 Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 121/217 (55%), Gaps = 17/217 (7%) Query: 15 LDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTYQNALAELTAAK-FS 73 LD++++++ L + + K+ LTP++++ SF A +SAYG L +ALTT+Q A L+ A FS Sbjct: 13 LDLSSILDSLTAAQ-KATLTPISNQQSSFTAKLSAYGTLKSALTTFQTANTALSKADLFS 71 Query: 74 AQKAAVSNTGRSSDGKSGNDAVSADINTDASTKAQAQIIQSAGFASGHL--FKAGDS-VA 130 A S+T S +GN A++ + AQAQ + + DS + Sbjct: 72 ----ATSSTTAFSATTAGN-AIAGKYTISVTHLAQAQTLTTRTTRDDTKTAIATSDSKLT 126 Query: 131 IKV-GEASPSFITLK-ADATINGLRDTINAARAGVTASVVRDDAGDH-LVLESNTAG--T 185 I+ G+ P I + A+++++G+RD IN A+AGV+AS++ GD+ L + SN G Sbjct: 127 IQQGGDKDPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGDYRLSVTSNDTGLDN 186 Query: 186 SKLLKVRANNSL-SAISFDAQQSRPGAMTQTQAARDA 221 + L V +++L S + +DA S G M + AA++A Sbjct: 187 AMTLSVSGDDALQSFMGYDASASSNG-MEVSVAAQNA 222 >fliD [N] COG1345 Flagellar capping protein Eco Escherichia coli K12 Length = 468 Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 100/321 (31%), Positives = 163/321 (50%), Gaps = 23/321 (7%) Query: 372 AAPALADVARAINEAKAGVSATVQREGQG---------DKAVER-LVLSASGSDPV-SLR 420 A +L+ + AIN AKAGVSA++ G G D ++ + LS SG D + S Sbjct: 146 ANSSLSGIRDAINNAKAGVSASIINVGNGEYRLSVTSNDTGLDNAMTLSVSGDDALQSFM 205 Query: 421 GSGDYAVLAAS-AMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKL 479 G Y A+S M Q+A+L+++ VAI +SNTI DA+ +TLNLN T T Sbjct: 206 G---YDASASSNGMEVSVAAQNAQLTVNNVAIENSSNTISDALENITLNLNDVT--TGNQ 260 Query: 480 TLAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQ--APAKVRGQAGEQGPLAGESMVRA 537 TL I+ D+S A+ +VNA+N+L + +T+ A Q+ G L G+S +R Sbjct: 261 TLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGDSTLRT 320 Query: 538 LTGELRNAVLASMPGNALGSLTAIGVGFK-KDGTLDLDSARLAKAGERNFEAVAQLFAG- 595 + +L++ + ++ ++ +L IG+ DG L+LD+ +L A +++ V L G Sbjct: 321 IQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGD 380 Query: 596 --KEGLVARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARLANLRDSYTNQF 653 K G+ S L L G++ T G+ +L ++ AA R+ Y QF Sbjct: 381 GKKTGITTTIGSNLTSWLSTTGIIKAATDGVSKTLNKLTKDYNAASDRIDAQVARYKEQF 440 Query: 654 NRLNVTLSKMQASQNYLTQQL 674 +L+V ++ + ++ +YLTQQ Sbjct: 441 TQLDVLMTSLNSTSSYLTQQF 461 >YPO1841 [N] COG1345 Flagellar capping protein Ype Yersinia pestis Length = 466 Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 85/264 (32%), Positives = 134/264 (50%), Gaps = 14/264 (5%) Query: 416 PVSLRGSGDYAVLAASAMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSA 475 P S GSG A+ Q K +DA LS++GV+IT SNTI DA GVT+NL T Sbjct: 210 PSSTGGSG--------ALTQKVKAEDATLSVNGVSITRQSNTITDAPQGVTINLKAVTKE 261 Query: 476 TDKLTLAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKV-RGQAGEQGPLAGESM 534 L I D++ AA+ SFV+A+N+L +T+ + + Q+ G L G+ Sbjct: 262 GAPEQLTIVRDNTATKAAIQSFVDAYNSLQTTFGSLTKYTVVETGQDQSTSNGALVGDGT 321 Query: 535 VRALTGELRNAVLASMPGNALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFA 594 +R++ +L++ + +S G+ L +L +IG+ DG L +++ +L A +V F Sbjct: 322 LRSIQTQLKSQLASSQSGD-LKTLASIGITQDLDGKLVINADKLNTALTDKPNSVTAFFV 380 Query: 595 GK---EGLVARTRSLLDKVLGEQ-GLLAGKTRGLQGSLKIVSDQQAAARARLANLRDSYT 650 G G +T LL+ L G L T G+ SLK + Q AA A + + Y Sbjct: 381 GDGETTGFATQTEKLLNTALDTTLGTLKTATDGINTSLKNLDKQIAATTASIETAIERYK 440 Query: 651 NQFNRLNVTLSKMQASQNYLTQQL 674 QF +L+ ++ M ++ ++LTQQ Sbjct: 441 TQFTQLDKLMTSMNSTASFLTQQF 464 >STM1960 [N] COG1345 Flagellar capping protein Sty Salmonella typhimurium LT2 Length = 467 Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 86/319 (26%), Positives = 162/319 (50%), Gaps = 26/319 (8%) Query: 379 VARAINEAKAGVSATVQREGQGDKAVERLVLSA-SGSD---PVSLRGSGDYAVLAASA-- 432 + AIN+A +G++A++ + + + +LVL+A SG+D +++ G L A Sbjct: 156 IRDAINDADSGIAASIVKVKENEF---QLVLTANSGTDNTMKITVEGDTKLNDLLAYDST 212 Query: 433 -----MGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKLTLAISNDS 487 M +L K ++A+L+++G+ I SNT+ DA G+TL L K TD T+ ++ D Sbjct: 213 TNTGNMQELVKAENAKLNVNGIDIERQSNTVTDAPQGITLTLTK--KVTDA-TVTVTKDD 269 Query: 488 SGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKVRGQAGEQ-GPLAGESMVRALTGELRNAV 546 + A+ S+V+A+N+L + +T+ + +A ++ G L G+S+VR + +R Sbjct: 270 TKAKEAIKSWVDAYNSLVDTFSSLTKYTAVEPGEEASDKNGALLGDSVVRTIQTGIRAQF 329 Query: 547 LASMPGNALGSLTAIGVGFKKDGT---LDLDSARLAKAGERNFEAVAQLFA--GKE-GLV 600 S +A ++ IG+ +DGT L +D +L K + N A +L GKE G+ Sbjct: 330 ANSGSNSAFKTMAEIGI--TQDGTSGKLKIDDDKLTKVLKDNTAAARELLVGDGKETGIT 387 Query: 601 ARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARLANLRDSYTNQFNRLNVTL 660 + + + L + G++ + +LK ++ Q + + Y QF +L+ + Sbjct: 388 TKIATEVKSYLADDGIIDNAQDNVNATLKSLTKQYLSVSNSIDETVARYKAQFTQLDTMM 447 Query: 661 SKMQASQNYLTQQLARLRR 679 SK+ + +YLTQQ + + Sbjct: 448 SKLNNTSSYLTQQFTAMNK 466 >VC2140 [N] COG1345 Flagellar capping protein Vch Vibrio cholerae Length = 666 Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 95/354 (26%), Positives = 153/354 (43%), Gaps = 44/354 (12%) Query: 324 DFAVFSSDPSGNASTASVTP-------EKRFSQGAVNLSVGARTISLKPASATAGAAPAL 376 D +S+ SG + VTP E++ +Q + R+ + P A A A L Sbjct: 334 DVPGWSNTASGTLLDSYVTPQEAQQKLEQKLAQEKAQIEAAIRSGKMTPEEAKAQARAKL 393 Query: 377 ADVARAINEAKAGVSATVQREGQGDKAVERLVLSASGSDPVSLRGSGDYAVLAASAMGQL 436 + RA E Q +KA L + S D G G M ++ Sbjct: 394 SPEERAYIE-------------QVEKAQAALNAAQSAFD-----GYG--------GMTEV 427 Query: 437 QKPQDARLSIDGVA-ITATSNTIKDAISGVTLNLN-KTTSATDKLTLAISNDSSGVGAAV 494 Q QD+ + +DGVA +++ +N I++AI GV L L KT + I D V + Sbjct: 428 QSAQDSMVVLDGVATLSSNNNIIENAIEGVNLTLKGKTDRNQPPAEIGIEYDRERVRNDI 487 Query: 495 NSFVNAFNTLAKAMAEMTRQAPAKVRGQAGEQGPLAGESMVRALTGELRNAVLASM---P 551 FV A+N + E+ A V + G+ GPLAG+S+VR+ L+ +S+ P Sbjct: 488 EQFVAAYNQFFQTSKEL-----AGVDPRTGQAGPLAGDSIVRSADSRLKTVFSSSIEQAP 542 Query: 552 GNALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFAGKEGLVARTRSLLDKVL 611 N L SLT G+ + GTL+++ A L + NF + + F G +G R + + Sbjct: 543 EN-LKSLTEFGITTTRQGTLEINYAMLDRQLNNNFTKLGEFFGGNQGFAKRVEDAISSMT 601 Query: 612 GEQGLLAGKTRGLQGSLKIVSDQQAAARARLANLRDSYTNQFNRLNVTLSKMQA 665 G G + + + L + D Q + R+ +L +F+ + SKMQ+ Sbjct: 602 GVTGSIRTREKSLNEQTYRLDDDQRSLDRRMESLEKRTHAKFSAMQDATSKMQS 655 >lin0715 [N] COG1345 Flagellar capping protein Lin Listeria innocua Length = 429 Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 85/315 (26%), Positives = 138/315 (43%), Gaps = 35/315 (11%) Query: 360 TISLKPASATAGAAPALADVARAINEAKAGVSATVQREGQGDKAVERLVLSASGSD-PVS 418 TI + A ++ +V +IN A A V+ + G E +V++AS + S Sbjct: 125 TIKINGKEIKVDADSSMKNVMNSINSAGAKVN--IYTLG------ENMVVTASTTGVENS 176 Query: 419 LRGSGDYAVLAASAMGQLQKP------QDARLSIDGVAITATSNTIKDAISGVTLNLNKT 472 ++ GD AVL A+G +Q +DA+L I+G +T+ +N + + I GVT+NL K Sbjct: 177 IKFEGDSAVL--EALGLVQNSPDHLAAEDAKLRINGATVTSATNKVTNYIPGVTINLKKE 234 Query: 473 TSATDKLTLAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKVRGQAGEQGPLAGE 532 T+ +KLT+ +D + + SFVN +N L M T + Q A Sbjct: 235 TTGAEKLTIQDQSDEKA-ASMITSFVNTYNALTSTMKTYTGKGTIL-------QASAADL 286 Query: 533 SMVRALTGELRNAVLASMPGNALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQL 592 RA L N GN L G+ K+G L +D + K + AV + Sbjct: 287 EANRA----LNNVFQHKKDGNTLFDF---GISVDKEGVLKVDETAMKKMVAEDPTAVERF 339 Query: 593 FAGKEGLVARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARLANLRDSYTNQ 652 F G G+ L+K G G ++ +T + + ++ + +R L + T+Q Sbjct: 340 FFGIGGIGDELYQSLNKTFGSTGFISDETTSMTNEINKLNLKLTDITSRNDTLLTNITDQ 399 Query: 653 FNRLNVTLSKMQASQ 667 +N+ L MQA Q Sbjct: 400 YNKW---LEMMQAMQ 411 >jhp0689 [N] COG1345 Flagellar capping protein jHp Helicobacter pylori J99 Length = 685 Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 8/162 (4%) Query: 436 LQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKLTLAISNDSSGVGAAVN 495 LQK D++ + +GV+IT +N + D ISGV + L +TT +++S D+ + ++ Sbjct: 430 LQKASDSQFTYNGVSITRPTNEVNDVISGVNITLEQTTEPNKPAIISVSRDNQAIIDSLK 489 Query: 496 SFVNAFNTLAKAMAEMTR-QAPAKVRGQAGEQGPLAGESMVRALTGELRNAVLASMP-GN 553 FV A+N L + E TR A K+ G G +RA+ L N S+ N Sbjct: 490 EFVKAYNELIPKLDEDTRYDADTKI------AGIFNGVGDIRAIRSSLNNVFSYSVHTDN 543 Query: 554 ALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFAG 595 + SL G+ G + LD A+L+ A N +A F G Sbjct: 544 GVESLMKYGLSLDDKGVMSLDEAKLSSALNSNPKATQDFFYG 585 >HP0752 [N] COG1345 Flagellar capping protein Hpy Helicobacter pylori 26695 Length = 674 Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 21/231 (9%) Query: 379 VARAINEAKAGVSATVQREGQGDKAVERLVLSASGSDPV---SLRGSGDYAVLAASAMG- 434 + +AIN AK G+SA EG+ + +L+ G D + SL+ G A + S Sbjct: 362 IIQAIN-AKEGLSAFKNAEGKLVINSKTGMLTIKGEDALGKASLKDLGLNAGMVQSYEAS 420 Query: 435 --------QLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKLTLAISND 486 LQK D+ + +GV+IT +N + D ISGV + L +TT +++S D Sbjct: 421 QNTLFMSKNLQKASDSAFTYNGVSITRPTNEVNDVISGVNITLEQTTEPNKPAIISVSRD 480 Query: 487 SSGVGAAVNSFVNAFNTLAKAMAEMTR-QAPAKVRGQAGEQGPLAGESMVRALTGELRNA 545 + + ++ FV A+N L + E TR A K+ G G +RA+ L N Sbjct: 481 NQAIIDSLTEFVKAYNELIPKLDEDTRYDADTKI------AGIFNGVGDIRAIRSSLNNV 534 Query: 546 VLASMP-GNALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFAG 595 S+ N + SL G+ G + LD A+L+ A N +A F G Sbjct: 535 FSYSVHTDNGVESLMKYGLSLDDKGVMSLDEAKLSSALNSNPKATQDFFYG 585