BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0050.p (97 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 114 5e-26 YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 101 4e-22 STM1626 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 92 2e-19 RSp1224_2 [NT] COG0840 Methyl-accepting chemotaxis protein Rso R... 90 1e-18 STM3577 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 88 5e-18 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 88 5e-18 trg [NT] COG0840 Methyl-accepting chemotaxis protein Eco Escheri... 86 2e-17 Ztap [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escher... 86 2e-17 ECs2595 [NT] COG0840 Methyl-accepting chemotaxis protein Ecs Esc... 86 2e-17 Ztrg [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escher... 86 2e-17 >RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 61/92 (66%), Positives = 80/92 (86%) Query: 1 VGQGTQLADQAGKTMEEIVTSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDTTTQQN 60 V QGT L D+AG TME+IV +I+RVS+I+ I++A+AEQ++G++QVGQAV+QMD TQQN Sbjct: 424 VEQGTTLVDRAGATMEQIVGAIQRVSNIVAEISSASAEQSSGVSQVGQAVSQMDEATQQN 483 Query: 61 AALVEESAAAAISLSGQARELVQAVAVFRLGQ 92 AALVE+SAAAA SL GQA++LVQAVAVF+L + Sbjct: 484 AALVEQSAAAASSLQGQAQQLVQAVAVFKLAR 515 >YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 649 Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 57/92 (61%), Positives = 67/92 (72%) Query: 1 VGQGTQLADQAGKTMEEIVTSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDTTTQQN 60 V GT L AG TMEEIV S+ V DIM I +A+ EQ+ GI QV A+++MD+TTQQN Sbjct: 522 VNAGTSLVKNAGNTMEEIVRSVSHVRDIMAEIASASDEQSRGITQVSLAISEMDSTTQQN 581 Query: 61 AALVEESAAAAISLSGQARELVQAVAVFRLGQ 92 AALVEESAAAA SL+ QA L QAVAVFRL + Sbjct: 582 AALVEESAAAADSLAEQAILLAQAVAVFRLSE 613 >STM1626 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 541 Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/97 (52%), Positives = 68/97 (70%) Query: 1 VGQGTQLADQAGKTMEEIVTSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDTTTQQN 60 + QG++ AG TM EIV +++RV+DIM+ I AA+ EQ+ GI QV QA+++MD TQQN Sbjct: 440 IEQGSEEVIAAGSTMNEIVDAVKRVTDIMLDIAAASDEQSRGIVQVSQAISEMDRVTQQN 499 Query: 61 AALVEESAAAAISLSGQARELVQAVAVFRLGQRAVTV 97 A+LVEE++AAA SL QA L QAV FRL T+ Sbjct: 500 ASLVEEASAAARSLEEQAARLTQAVDAFRLHDTGATM 536 >RSp1224_2 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 381 Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/89 (56%), Positives = 65/89 (73%) Query: 1 VGQGTQLADQAGKTMEEIVTSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDTTTQQN 60 V G++L +AGKTM++IV+ ++RVS ++ I+ ATAEQ GI QV QAVT +D TQ+N Sbjct: 293 VASGSRLVGEAGKTMDDIVSQVKRVSGMIAEISLATAEQTDGIMQVSQAVTHLDQITQEN 352 Query: 61 AALVEESAAAAISLSGQARELVQAVAVFR 89 A LVE+SA AA SL QA LV+AV VFR Sbjct: 353 ATLVEQSALAAESLRVQATRLVEAVGVFR 381 >STM3577 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 547 Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 50/81 (61%), Positives = 65/81 (80%) Query: 10 QAGKTMEEIVTSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDTTTQQNAALVEESAA 69 +AG+TM+EIV ++ RV+DIM I +A+ EQ+ GI QV QAV++MD+ TQQNA+LVEESAA Sbjct: 436 EAGETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVAQAVSEMDSVTQQNASLVEESAA 495 Query: 70 AAISLSGQARELVQAVAVFRL 90 AA +L QA EL QAVA FR+ Sbjct: 496 AAAALEDQANELRQAVAAFRI 516 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 50/90 (55%), Positives = 66/90 (73%) Query: 1 VGQGTQLADQAGKTMEEIVTSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDTTTQQN 60 V G+ L + AG+TM +IV ++ RV+DIM I +A+ EQ+ GI Q+GQAV +MD TQQN Sbjct: 428 VDLGSVLVESAGETMGDIVNAVTRVTDIMGEIASASDEQSRGIDQIGQAVAEMDRVTQQN 487 Query: 61 AALVEESAAAAISLSGQARELVQAVAVFRL 90 A+LVEESA+AA SL QA L QA++VF L Sbjct: 488 ASLVEESASAAASLEEQASMLTQAMSVFVL 517 >trg [NT] COG0840 Methyl-accepting chemotaxis protein Eco Escherichia coli K12 Length = 546 Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/86 (54%), Positives = 63/86 (73%) Query: 11 AGKTMEEIVTSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDTTTQQNAALVEESAAA 70 AGKTM IV ++ V+ IM I AA+ EQ+ GI QV QA+++MD TQQNA+LVEE++AA Sbjct: 446 AGKTMSTIVDAVASVTHIMQEIAAASDEQSRGITQVSQAISEMDKVTQQNASLVEEASAA 505 Query: 71 AISLSGQARELVQAVAVFRLGQRAVT 96 A+SL QA L +AV VFRL + +V+ Sbjct: 506 AVSLEEQAARLTEAVDVFRLHKHSVS 531 >Ztap [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escherichia coli O157:H7 EDL933 Length = 533 Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/95 (52%), Positives = 64/95 (67%) Query: 1 VGQGTQLADQAGKTMEEIVTSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDTTTQQN 60 V QG++L + A TM +IV+S+ RV+DIM I +A+ EQ GI QV QAV+QMD TQQN Sbjct: 424 VQQGSKLVNNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQN 483 Query: 61 AALVEESAAAAISLSGQARELVQAVAVFRLGQRAV 95 A+LVEE+A A L+ QA L VAVF L + V Sbjct: 484 ASLVEEAAVATEQLANQADHLSSRVAVFTLEEHEV 518 >ECs2595 [NT] COG0840 Methyl-accepting chemotaxis protein Ecs Escherichia coli O157:H7 Length = 533 Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/95 (52%), Positives = 64/95 (67%) Query: 1 VGQGTQLADQAGKTMEEIVTSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDTTTQQN 60 V QG++L + A TM +IV+S+ RV+DIM I +A+ EQ GI QV QAV+QMD TQQN Sbjct: 424 VQQGSKLVNNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQN 483 Query: 61 AALVEESAAAAISLSGQARELVQAVAVFRLGQRAV 95 A+LVEE+A A L+ QA L VAVF L + V Sbjct: 484 ASLVEEAAVATEQLANQADHLSSRVAVFTLEEHEV 518 >Ztrg [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escherichia coli O157:H7 EDL933 Length = 546 Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/85 (55%), Positives = 63/85 (74%) Query: 11 AGKTMEEIVTSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDTTTQQNAALVEESAAA 70 AGKTM IV ++ V+ IM I AA+ EQ+ GI QV QA+++MD TQQNA+LVEE++AA Sbjct: 446 AGKTMSTIVDAVASVTHIMQEIAAASDEQSRGITQVSQAISEMDKVTQQNASLVEEASAA 505 Query: 71 AISLSGQARELVQAVAVFRLGQRAV 95 A+SL QA L +AV VFRL +++V Sbjct: 506 AVSLEEQAARLTEAVDVFRLNKQSV 530