BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0008.p         (296 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3089 [S] COG3782 Uncharacterized protein conserved in bacteria...    67   5e-11

>PA3089 [S] COG3782 Uncharacterized protein conserved in bacteria Pae
           Pseudomonas aeruginosa
          Length = 321

 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 106/231 (45%), Gaps = 34/231 (14%)

Query: 16  RDPHVRALAWLLYAPDLL-----AQDAPCWAGRIATLGPVAPE-VAGWLHDLEHDPGLNA 69
           R P VR LAW L AP LL      Q  P  A R        PE +A WL + E  P    
Sbjct: 12  RHPAVRDLAWTLLAPPLLRRTPEPQRHPLAASRWRQ----EPERLAAWLREQERQP---Q 64

Query: 70  ALHAHLARQPTARLGRYAEQLLTFYLQQ--QDWLVVANLQVRQQGPTHETLGEFDFLVRP 127
            L A LA+ P  RLG Y E L  F L+Q     L+ ANL VR  G    TLGE D L+  
Sbjct: 65  HLAAWLAQWPRQRLGLYYEHLWQFALEQAPDVRLIAANLPVRDGG---HTLGELDLLL-- 119

Query: 128 PGDDELGLIHWEFATKFYLLAPQSAADAAADAGAFVGPNLADTLGKKMRKIMQQQLMLSA 187
              D+ G+ H E A K Y L PQS        G ++GP   D L +K+  + + QL L+A
Sbjct: 120 --RDDDGIHHLELAIKLY-LGPQSG------PGDWLGPGGQDRLSRKLEHLCRHQLPLAA 170

Query: 188 HPAAASVLPA--PVVAARAL-VKGWLFYRHGETVELPASLGVAADHCRGFW 235
                 VL A     A  AL + G+LF+       LPA   +   H RG W
Sbjct: 171 TREGRQVLAAHGAESAVSALWLSGYLFHPWPGPGSLPAD--IEPRHLRGRW 219