BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0007.p         (90 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1369 [L] COG1573 Uracil-DNA glycosylase Rso Ralstonia solanac...   102   2e-22
aq_1693 [L] COG1573 Uracil-DNA glycosylase Aae Aquifex aeolicus        61   8e-10
BMEI1321 [L] COG1573 Uracil-DNA glycosylase Bme Brucella melitensis    60   2e-09

>RSc1369 [L] COG1573 Uracil-DNA glycosylase Rso Ralstonia solanacearum
          Length = 292

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 61/85 (71%), Gaps = 2/85 (2%)

Query: 1   VASCLPYLQRQIELIQPTVLVALGKTAAISLLGLDPTTPVARLRGTVHRYQELPLVVTYH 60
           VA C PYL+RQI LI+P V+V LG+ AA SLL     TPV +LRG VH    +P+VVTYH
Sbjct: 204 VAMCDPYLKRQIALIKPRVIVVLGRFAAQSLL--QTQTPVGKLRGKVHEVDGVPVVVTYH 261

Query: 61  PAYLLRSLQDKSKTWADLCLAMSTY 85
           PAYLLR+L DK++ W DLCLA   Y
Sbjct: 262 PAYLLRTLTDKARAWEDLCLARKVY 286


>aq_1693 [L] COG1573 Uracil-DNA glycosylase Aae Aquifex aeolicus
          Length = 195

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 5/79 (6%)

Query: 3   SCLPYLQRQIELIQPTVLVALGKTAAISLLGLDPTTPVARLRGTVHRYQELPLV---VTY 59
           +C PYL+++IE+IQP V+  LG TA   +LG   +  + ++RG V  Y   P +   +TY
Sbjct: 109 ACFPYLKKEIEIIQPKVICCLGATAGEGILG--KSLRITKVRGQVFPYPYNPRIKVFLTY 166

Query: 60  HPAYLLRSLQDKSKTWADL 78
           HPAY+LR+ ++++    D 
Sbjct: 167 HPAYVLRNPKEETTIIKDF 185


>BMEI1321 [L] COG1573 Uracil-DNA glycosylase Bme Brucella melitensis
          Length = 290

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/92 (43%), Positives = 52/92 (56%), Gaps = 8/92 (8%)

Query: 4   CLPYLQRQIELIQPTVLVALGKTAAISLLGLDPTTPVARLRGT--VHRY---QELPLVVT 58
           C P+++RQIEL  P VLVALG  A  +L G      + RLRG   +HR     E+P++ T
Sbjct: 201 CRPFIERQIELAAPKVLVALGGPAGKALTG--AAEGILRLRGNWKIHRTPTGMEIPVMPT 258

Query: 59  YHPAYLLRSLQDKSKTWADLCLAMSTYQAQAR 90
            HPAYLLR+   K   W D  LA+    A+ R
Sbjct: 259 LHPAYLLRTPAQKRFAWRDF-LAVKLKLAELR 289