BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0344.p (94 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1543 [K] COG0640 Predicted transcriptional regulators Rso Ral... 103 7e-23 AGl2725 [K] COG0640 Predicted transcriptional regulators Atu Agr... 98 5e-21 XF0767 [K] COG0640 Predicted transcriptional regulators Xfa Xyle... 93 1e-19 SMa1056 [K] COG0640 Predicted transcriptional regulators Sme Sin... 92 2e-19 mlr2159 [K] COG0640 Predicted transcriptional regulators Mlo Mes... 92 2e-19 BMEII0810 [K] COG0640 Predicted transcriptional regulators Bme B... 91 9e-19 SMc04220 [K] COG0640 Predicted transcriptional regulators Sme Si... 84 5e-17 CC2864 Non COG 80 8e-16 VC0678 [K] COG0640 Predicted transcriptional regulators Vch Vibr... 78 6e-15 VCA0642 [K] COG0640 Predicted transcriptional regulators Vch Vib... 77 9e-15 >RSc1543 [K] COG0640 Predicted transcriptional regulators Rso Ralstonia solanacearum Length = 121 Score = 103 bits (258), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 50/91 (54%), Positives = 68/91 (74%) Query: 1 MRQAAGEAVGALKVLANEDRLLLLCQLSQQEMCVSELEEQLDIRQPTLSQQLGVLRNEGV 60 +R AA +A LK +A+EDRLLLLCQL+Q E V ELE + + QP+LSQ LGVLR+EG+ Sbjct: 24 LRDAAAQACAVLKAMAHEDRLLLLCQLTQGERNVGELEMLVGLHQPSLSQHLGVLRDEGL 83 Query: 61 VSTRRDGKRIYYRVADARLLEMLDLMYRLYC 91 V+TRRDGK IYYR+A +++++ + LYC Sbjct: 84 VATRRDGKYIYYRLASFEVIQIMQTLSSLYC 114 >AGl2725 [K] COG0640 Predicted transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 117 Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 47/94 (50%), Positives = 65/94 (69%) Query: 1 MRQAAGEAVGALKVLANEDRLLLLCQLSQQEMCVSELEEQLDIRQPTLSQQLGVLRNEGV 60 M + A E LK LA+ RL+L C L+Q E V ELE +LDIRQPTLSQQLGVLR G+ Sbjct: 21 MEKRATEVAILLKTLAHPARLMLACTLAQGEFSVGELEAKLDIRQPTLSQQLGVLREAGI 80 Query: 61 VSTRRDGKRIYYRVADARLLEMLDLMYRLYCPKE 94 V TRR+ K+I+YR+A+ + +++ +Y ++C E Sbjct: 81 VDTRREAKQIFYRLAEDKAARLIEALYAIFCAPE 114 >XF0767 [K] COG0640 Predicted transcriptional regulators Xfa Xylella fastidiosa 9a5c Length = 114 Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 43/94 (45%), Positives = 66/94 (70%) Query: 1 MRQAAGEAVGALKVLANEDRLLLLCQLSQQEMCVSELEEQLDIRQPTLSQQLGVLRNEGV 60 M + A E LK L++ RL+L+C L + E V ELE+Q+ I QPTLSQQLGVLR G+ Sbjct: 18 MEKRANEVANLLKTLSHPVRLMLVCTLVEGEFSVGELEQQIGIGQPTLSQQLGVLRESGI 77 Query: 61 VSTRRDGKRIYYRVADARLLEMLDLMYRLYCPKE 94 V TRR+ K+I+YR+ +A+ ++++ +Y ++C +E Sbjct: 78 VETRRNIKQIFYRLTEAKAAQLVNALYTIFCAQE 111 >SMa1056 [K] COG0640 Predicted transcriptional regulators Sme Sinorhizobium meliloti Length = 115 Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 43/94 (45%), Positives = 61/94 (64%) Query: 1 MRQAAGEAVGALKVLANEDRLLLLCQLSQQEMCVSELEEQLDIRQPTLSQQLGVLRNEGV 60 M AGE LK L++ RL+++C L Q E V ELEE++D+ QP LSQ L VLR G+ Sbjct: 20 MASRAGEVAKLLKTLSHPARLMIVCTLVQGEYSVGELEEKVDVHQPHLSQHLTVLRGSGI 79 Query: 61 VSTRRDGKRIYYRVADARLLEMLDLMYRLYCPKE 94 V TRRDGK+I+YR+ + ++ +Y ++C KE Sbjct: 80 VQTRRDGKQIFYRLTGEKAARLIAALYDIFCVKE 113 >mlr2159 [K] COG0640 Predicted transcriptional regulators Mlo Mesorhizobium loti Length = 112 Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 44/91 (48%), Positives = 61/91 (67%) Query: 1 MRQAAGEAVGALKVLANEDRLLLLCQLSQQEMCVSELEEQLDIRQPTLSQQLGVLRNEGV 60 M AGE LK LA+ RL+L+C L + E VS+LEE LDI QP LSQQL VLR+ + Sbjct: 17 MESRAGEVAALLKTLAHPMRLMLVCTLVEGEYSVSQLEETLDIHQPNLSQQLTVLRDANI 76 Query: 61 VSTRRDGKRIYYRVADARLLEMLDLMYRLYC 91 V TRRDGK+I+YR+ + +++ +Y ++C Sbjct: 77 VETRRDGKQIFYRLTAEKAAQLVAALYTIFC 107 >BMEII0810 [K] COG0640 Predicted transcriptional regulators Bme Brucella melitensis Length = 117 Score = 90.5 bits (223), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 44/91 (48%), Positives = 61/91 (67%) Query: 1 MRQAAGEAVGALKVLANEDRLLLLCQLSQQEMCVSELEEQLDIRQPTLSQQLGVLRNEGV 60 M A E LK L++ RL+L C L++ E V ELEE L IRQPTLSQQLGVLR + Sbjct: 21 MEARANEVAELLKTLSHPARLMLACTLAEGEYSVGELEEMLGIRQPTLSQQLGVLREADI 80 Query: 61 VSTRRDGKRIYYRVADARLLEMLDLMYRLYC 91 V TRR+ K+IYYR+ + + +++D +Y ++C Sbjct: 81 VETRREAKQIYYRLVETKAAKLIDALYGIFC 111 >SMc04220 [K] COG0640 Predicted transcriptional regulators Sme Sinorhizobium meliloti Length = 105 Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 44/91 (48%), Positives = 66/91 (72%) Query: 1 MRQAAGEAVGALKVLANEDRLLLLCQLSQQEMCVSELEEQLDIRQPTLSQQLGVLRNEGV 60 M + A EA LK AN++RL++LC L + E V +LEE L IRQP+LSQQL VLR G+ Sbjct: 14 MTERADEAAALLKAAANQNRLMILCTLIEGEHSVGQLEEMLGIRQPSLSQQLTVLREAGI 73 Query: 61 VSTRRDGKRIYYRVADARLLEMLDLMYRLYC 91 V+TRRD K+I+YR+A+ + + ++ +Y+++C Sbjct: 74 VATRRDAKQIFYRLAEEKAVRLVMALYQIFC 104 >CC2864 Non COG Length = 123 Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 60/90 (66%) Query: 4 AAGEAVGALKVLANEDRLLLLCQLSQQEMCVSELEEQLDIRQPTLSQQLGVLRNEGVVST 63 +A +A L+ L+NE RL++LCQL++ E V +++ + + Q LSQ L VLR+EGVV+ Sbjct: 18 SAAQAAKLLRALSNERRLMILCQLAEGERSVGQIQPLVGLSQSALSQHLAVLRDEGVVAA 77 Query: 64 RRDGKRIYYRVADARLLEMLDLMYRLYCPK 93 RR+ ++YR+AD L+++ + ++CP Sbjct: 78 RREATTVWYRIADPAALKVVATLAEIFCPP 107 >VC0678 [K] COG0640 Predicted transcriptional regulators Vch Vibrio cholerae Length = 108 Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 60/91 (65%) Query: 1 MRQAAGEAVGALKVLANEDRLLLLCQLSQQEMCVSELEEQLDIRQPTLSQQLGVLRNEGV 60 M + + +AV LK +ANE RL +LC L E+ V EL +L++ Q LSQ L LR +G+ Sbjct: 14 MEKNSAKAVVLLKAMANERRLQILCMLLDNELSVGELSSRLELSQSALSQHLAWLRRDGL 73 Query: 61 VSTRRDGKRIYYRVADARLLEMLDLMYRLYC 91 V+TR++ + ++Y ++ + M++L++RLYC Sbjct: 74 VNTRKEAQTVFYTLSSTEVKAMIELLHRLYC 104 >VCA0642 [K] COG0640 Predicted transcriptional regulators Vch Vibrio cholerae Length = 105 Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 61/91 (67%) Query: 1 MRQAAGEAVGALKVLANEDRLLLLCQLSQQEMCVSELEEQLDIRQPTLSQQLGVLRNEGV 60 M++ A E L+V+A+ +RL++LCQL+Q EM V +L++ + Q SQ L VLR G+ Sbjct: 14 MKKNAEEVAELLRVMAHPERLMVLCQLTQSEMGVGQLQQGSTLSQSAFSQHLTVLRKHGI 73 Query: 61 VSTRRDGKRIYYRVADARLLEMLDLMYRLYC 91 + R++ ++++YR+AD+R+ ++ + ++C Sbjct: 74 IQARKESQQVFYRLADSRITALIQSLQNVFC 104