BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0330.p         (137 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEI0524 [S] COG5395 Predicted membrane protein Bme Brucella mel...    68   4e-12
CC0331 Non COG                                                         64   8e-11
mlr2123 [S] COG5395 Predicted membrane protein Mlo Mesorhizobium...    59   4e-09

>BMEI0524 [S] COG5395 Predicted membrane protein Bme Brucella melitensis
          Length = 141

 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 36  RWHRALGYGWFTCMVAVVLSAVFIRSHDLPNIAGYTPLHLLVPVTSFLLYRGLAAVMRGD 95
           + HRALG  W   M+A  +S+ FI  H +  + G++P+HLL  +      R +AA   G 
Sbjct: 7   KLHRALGRVWIVLMIATAISSFFI--HQINLVGGFSPIHLLSILVLLGCARAVAAARMGQ 64

Query: 96  IAAHRRTMQRVYIGACLVAGSFTLLPQRYLGQL 128
           I  HR+T+ RVY+G  L AG F  +P R + ++
Sbjct: 65  IGIHRKTIARVYLGGILGAGFFAFMPGRIMNEV 97


>CC0331 Non COG
          Length = 186

 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 12/128 (9%)

Query: 4   APVIV-VHLAAALAALLIGPFALWTRLAAPVRPRWHRALGYGWFTCMVAVVLSAVFIRSH 62
           AP +V VHL +AL AL IG   L  R+        H+ LG+ W   M +  +S++FIR  
Sbjct: 65  APAVVQVHLFSALTALAIG-VVLMMRVKGTT---LHKLLGWTWVLAMGSTAVSSLFIRE- 119

Query: 63  DLPNIAGYTPLHLLVPVTSFLLYRGLAAVMRGDIAAHRRTMQRVYIGACLVAGSFTLLPQ 122
              N   ++ +HLL   T   L   + A+ RG ++AHR+ M  +++G  LVAG FT LP 
Sbjct: 120 --INHGAFSFIHLLSGWTIIGLPGAVYAIKRGKVSAHRKAMTGMFVGGLLVAGVFTFLP- 176

Query: 123 RYLGQLLW 130
              G+LLW
Sbjct: 177 ---GRLLW 181


>mlr2123 [S] COG5395 Predicted membrane protein Mlo Mesorhizobium loti
          Length = 165

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 36  RWHRALGYGWFTCMVAVVLSAVFIRSHDLPNIAGYTPLHLLVPVTSFLLYRGLAAVMRGD 95
           R HRALG  W   M  V  S +FI +  L     ++P+HLL      +L+RG+ A   G+
Sbjct: 38  RLHRALGRVWVALMATVAGSGLFIWTIRL--WGPFSPIHLLSLFVLAMLWRGVRAARGGN 95

Query: 96  IAAHRRTMQRVYIGACLVAGSFTLLPQRYL 125
           IAAHRR MQ  YI   +V G  T +P R +
Sbjct: 96  IAAHRRIMQGTYIFGLIVTGLLTFIPGRTM 125