BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0324.p (130 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO0007 [G] COG1869 ABC-type ribose transport system, auxiliary ... 144 4e-35 VCA0127 [G] COG1869 ABC-type ribose transport system, auxiliary ... 139 1e-33 ZrbsD [G] COG1869 ABC-type ribose transport system, auxiliary co... 132 2e-31 rbsD [G] COG1869 ABC-type ribose transport system, auxiliary com... 132 2e-31 ECs4690 [G] COG1869 ABC-type ribose transport system, auxiliary ... 131 3e-31 HI0501 [G] COG1869 ABC-type ribose transport system, auxiliary c... 129 1e-30 PM0156 [G] COG1869 ABC-type ribose transport system, auxiliary c... 128 4e-30 STM3881 [G] COG1869 ABC-type ribose transport system, auxiliary ... 123 8e-29 BH3729 [G] COG1869 ABC-type ribose transport system, auxiliary c... 119 2e-27 TM0959 [G] COG1869 ABC-type ribose transport system, auxiliary c... 112 2e-25 >YPO0007 [G] COG1869 ABC-type ribose transport system, auxiliary component Ype Yersinia pestis Length = 139 Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 75/139 (53%), Positives = 97/139 (69%), Gaps = 9/139 (6%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKK LLNA IS VI+ +GH D +VIGD GLP+P IDLA+TRGVPGFL V++ V Sbjct: 1 MKKGVLLNADISAVISRLGHTDQIVIGDAGLPIPATTTRIDLALTRGVPGFLQVVDVVTQ 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQ----ITALELAGK-----RSVSHENFKEQTRRARAVI 111 E+QVE +A+E+ + +P L +T LE + R +SHE FKEQT+++RAVI Sbjct: 61 EMQVENAYLAEEIVKNNPQLHEALLVLLTQLEQRQENQIALRYISHEAFKEQTKQSRAVI 120 Query: 112 RTGECTPYANIILGSGVVF 130 R+GEC+P+ANIILGSGV F Sbjct: 121 RSGECSPFANIILGSGVTF 139 >VCA0127 [G] COG1869 ABC-type ribose transport system, auxiliary component Vch Vibrio cholerae Length = 156 Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 72/139 (51%), Positives = 97/139 (69%), Gaps = 9/139 (6%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKK+ LLN+ +S ++AT+GH D + I D GLP+P V IDLA+T GVP FL + +LS Sbjct: 18 MKKSTLLNSELSYLVATLGHTDEITICDAGLPIPDEVTRIDLALTHGVPSFLETVRVILS 77 Query: 61 ELQVEFHVVADELAQVSPMLAA----QITALE-LAGK----RSVSHENFKEQTRRARAVI 111 E Q+E +VA E AQVSP+L ++ A E L GK + +SHE FK++T ++RAV+ Sbjct: 78 ESQIESVIVAQEFAQVSPVLHEALYRELKAEEQLCGKPIAIQYISHEAFKQRTLQSRAVV 137 Query: 112 RTGECTPYANIILGSGVVF 130 RTGECTPYAN+I +GVVF Sbjct: 138 RTGECTPYANVIFQAGVVF 156 >ZrbsD [G] COG1869 ABC-type ribose transport system, auxiliary component EcZ Escherichia coli O157:H7 EDL933 Length = 143 Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 67/139 (48%), Positives = 92/139 (66%), Gaps = 9/139 (6%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKK +LN+ IS VI+ +GH DTLV+ D GLP+P ID+A+T+GVP F+ VL V + Sbjct: 5 MKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMALTQGVPSFMQVLGVVTN 64 Query: 61 ELQVEFHVVADELAQVSPMLAAQ-ITALELAGK--------RSVSHENFKEQTRRARAVI 111 E+QVE ++A+E+ +P L +T LE K R +HE FK+QT ++AVI Sbjct: 65 EMQVEAAIIAEEIKHHNPQLHETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAESQAVI 124 Query: 112 RTGECTPYANIILGSGVVF 130 R+GEC+PYANIIL +GV F Sbjct: 125 RSGECSPYANIILCAGVTF 143 >rbsD [G] COG1869 ABC-type ribose transport system, auxiliary component Eco Escherichia coli K12 Length = 151 Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 67/139 (48%), Positives = 92/139 (66%), Gaps = 9/139 (6%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKK +LN+ IS VI+ +GH DTLV+ D GLP+P ID+A+T+GVP F+ VL V + Sbjct: 13 MKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMALTQGVPSFMQVLGVVTN 72 Query: 61 ELQVEFHVVADELAQVSPMLAAQ-ITALELAGK--------RSVSHENFKEQTRRARAVI 111 E+QVE ++A+E+ +P L +T LE K R +HE FK+QT ++AVI Sbjct: 73 EMQVEAAIIAEEIKHHNPQLHETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAESQAVI 132 Query: 112 RTGECTPYANIILGSGVVF 130 R+GEC+PYANIIL +GV F Sbjct: 133 RSGECSPYANIILCAGVTF 151 >ECs4690 [G] COG1869 ABC-type ribose transport system, auxiliary component Ecs Escherichia coli O157:H7 Length = 139 Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 67/139 (48%), Positives = 92/139 (66%), Gaps = 9/139 (6%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKK +LN+ IS VI+ +GH DTLV+ D GLP+P ID+A+T+GVP F+ VL V + Sbjct: 1 MKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMALTQGVPSFMQVLGVVTN 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQ-ITALELAGK--------RSVSHENFKEQTRRARAVI 111 E+QVE ++A+E+ +P L +T LE K R +HE FK+QT ++AVI Sbjct: 61 EMQVEAAIIAEEIKHHNPQLHETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAESQAVI 120 Query: 112 RTGECTPYANIILGSGVVF 130 R+GEC+PYANIIL +GV F Sbjct: 121 RSGECSPYANIILCAGVTF 139 >HI0501 [G] COG1869 ABC-type ribose transport system, auxiliary component Hin Haemophilus influenzae Length = 139 Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 69/139 (49%), Positives = 92/139 (66%), Gaps = 9/139 (6%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKTALLNA +S IAT+GH ++L I D GLP+P V IDLA+T GVP FL L V + Sbjct: 1 MKKTALLNAQLSHCIATLGHTESLTICDAGLPIPLSVERIDLALTAGVPSFLQTLNVVTN 60 Query: 61 ELQVEFHVVADELAQVSP-MLAAQITALELAGKRS--------VSHENFKEQTRRARAVI 111 E+ VE V+A+E+ + +P +L A +T L+ VSHE FK+ T ++A++ Sbjct: 61 EMYVERVVIAEEIKEKNPEILTALLTQLQKLESHQGNQIQVEFVSHETFKKFTLESKAIV 120 Query: 112 RTGECTPYANIILGSGVVF 130 RTGEC+PYAN+IL SGV F Sbjct: 121 RTGECSPYANVILYSGVPF 139 >PM0156 [G] COG1869 ABC-type ribose transport system, auxiliary component Pmu Pasteurella multocida Length = 139 Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 65/139 (46%), Positives = 94/139 (67%), Gaps = 9/139 (6%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKTALLNA +SQVIAT+GH D+L I D GLP+P + +DLA++ GVP FL V++ Sbjct: 1 MKKTALLNAPLSQVIATLGHTDSLTICDAGLPIPKQIERVDLALSAGVPSFLQTFHAVVT 60 Query: 61 ELQVEFHVVADELAQVSP-MLAAQITALELAGKRS--------VSHENFKEQTRRARAVI 111 E+ VE ++A+E+ + +P +L A + +L ++ VSH+ FK T ++A++ Sbjct: 61 EMFVERAIIAEEIKEKNPKILTALLNSLAQLEQQQGNQIEVQYVSHDMFKTYTHASKAIV 120 Query: 112 RTGECTPYANIILGSGVVF 130 R+GEC+PYANIIL SGV F Sbjct: 121 RSGECSPYANIILYSGVPF 139 >STM3881 [G] COG1869 ABC-type ribose transport system, auxiliary component Sty Salmonella typhimurium LT2 Length = 139 Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 63/139 (45%), Positives = 90/139 (64%), Gaps = 9/139 (6%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKK +LN+ IS VI+ +GH DTLV+ D GLP+P ID+A+T+GVP F+ V++ V Sbjct: 1 MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTR 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQ-ITALELAGKRS--------VSHENFKEQTRRARAVI 111 E+QVE ++A E+ Q +P L +T LE + +HE FK+ T ++AVI Sbjct: 61 EMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVI 120 Query: 112 RTGECTPYANIILGSGVVF 130 R+GEC+PYAN+IL +GV F Sbjct: 121 RSGECSPYANVILCAGVTF 139 >BH3729 [G] COG1869 ABC-type ribose transport system, auxiliary component Bha Bacillus halodurans Length = 129 Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 57/130 (43%), Positives = 90/130 (69%), Gaps = 1/130 (0%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKK +LN I++++A++GH D +VI D GLP+P V ID+++ +GVP F+ VL +L+ Sbjct: 1 MKKHGVLNRDIARILASLGHTDQIVIADCGLPIPEDVECIDVSLKQGVPSFVEVLAEILA 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITALELAGKRSVSHENFKEQTRRARAVIRTGECTPYA 120 +++VE + A+E+ + +P + +T + + HE FK+ T +A+AVIRTGE TPYA Sbjct: 61 DMEVEGLIAAEEVKEQNPAVHRALTGTNIP-IHYLPHEQFKDTTCKAKAVIRTGEVTPYA 119 Query: 121 NIILGSGVVF 130 N+IL SGV+F Sbjct: 120 NVILRSGVIF 129 >TM0959 [G] COG1869 ABC-type ribose transport system, auxiliary component Tma Thermotoga maritima Length = 135 Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 57/137 (41%), Positives = 86/137 (62%), Gaps = 9/137 (6%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKK +LN+ IS+++A MGH DTL + D+G P+P GV +DL V RG PG + V+E +L Sbjct: 1 MKKVGILNSEISKIVADMGHMDTLAVVDLGFPIPQGVKKVDLVVDRGKPGLMEVIEILLR 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITALELAGKR-------SVSHENFKEQTRRARAVIRT 113 EL+VE ++A E+ + S + + L+L K +V H+ FKE ++ + +IRT Sbjct: 61 ELKVERIILAKEMDEKS--IQTKQELLKLIEKMNGPVEVVTVPHKEFKEMSKNVKGIIRT 118 Query: 114 GECTPYANIILGSGVVF 130 G PY+N+IL GV+F Sbjct: 119 GADIPYSNVILVGGVIF 135