BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0309.p (251 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM0830 [ET] COG0834 ABC-type amino acid transport/signal transd... 154 1e-37 glnH [ET] COG0834 ABC-type amino acid transport/signal transduct... 152 7e-37 ZglnH [ET] COG0834 ABC-type amino acid transport/signal transduc... 152 7e-37 ECs0889 [ET] COG0834 ABC-type amino acid transport/signal transd... 152 7e-37 CAC3620 [ET] COG0834 ABC-type amino acid transport/signal transd... 145 1e-34 TM0593 [ET] COG0834 ABC-type amino acid transport/signal transdu... 142 9e-34 YPO2512 [ET] COG0834 ABC-type amino acid transport/signal transd... 139 6e-33 CAC0380 [ET] COG0834 ABC-type amino acid transport/signal transd... 138 1e-32 AF0231 [ET] COG0834 ABC-type amino acid transport/signal transdu... 132 6e-31 artJ [ET] COG0834 ABC-type amino acid transport/signal transduct... 130 4e-30 >STM0830 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sty Salmonella typhimurium LT2 Length = 248 Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/252 (37%), Positives = 140/252 (55%), Gaps = 21/252 (8%) Query: 7 LLCAGMASLSLLIAAVPAAHANGEVIRVGTDATFPPMEFVKDGKRTGFDVELIEALAKTM 66 LL +A+L+L A ++HA + + V TD F P EF + K GFDV+L +A+AK + Sbjct: 4 LLKVSLAALTLAFAV--SSHAADKKLVVATDTAFVPFEFKQGDKYVGFDVDLWDAIAKEL 61 Query: 67 GKKVQWIDIDFKGLIPGLVSNRFDIAASAIYMTDERRKVVNFSDPYYRGGLAVLVRRDDN 126 +DF G+IP L + D+A + I +TDER+K ++FSD YY+ GL V+V+ ++N Sbjct: 62 KLDYTLKPMDFSGIIPALQTKNIDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNN 121 Query: 127 SIKVPEDLNKGKRVSVQVGTKSVGYLKDN--------FPGVERVEVEKNQAMFDLLATGR 178 IK +DL+ GK V+V+ GT SV Y K N FP ++ +E L T R Sbjct: 122 DIKSVKDLD-GKVVAVKSGTGSVDYAKANIKTKDLRQFPNIDNAYME--------LGTNR 172 Query: 179 VNAVVTGRPAAVEYART--QPLVRVLDKGLTTELYGFALRKSDTELTAQLNKALQTLRMN 236 +AV+ P + + +T + + + L + YG A K EL ++N AL+TLR N Sbjct: 173 ADAVLHDTPNILYFIKTAGNGQFKAVGESLEAQQYGVAFPKGSDELREKVNGALKTLREN 232 Query: 237 GTYTALTDKWFG 248 GTY + KWFG Sbjct: 233 GTYNEIYKKWFG 244 >glnH [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Eco Escherichia coli K12 Length = 248 Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 92/252 (36%), Positives = 139/252 (55%), Gaps = 21/252 (8%) Query: 7 LLCAGMASLSLLIAAVPAAHANGEVIRVGTDATFPPMEFVKDGKRTGFDVELIEALAKTM 66 +L +A+L+L A ++HA + + V TD F P EF + K GFDV+L A+AK + Sbjct: 4 VLKVSLAALTLAFAV--SSHAADKKLVVATDTAFVPFEFKQGDKYVGFDVDLWAAIAKEL 61 Query: 67 GKKVQWIDIDFKGLIPGLVSNRFDIAASAIYMTDERRKVVNFSDPYYRGGLAVLVRRDDN 126 + +DF G+IP L + D+A + I +TDER+K ++FSD YY+ GL V+V+ ++N Sbjct: 62 KLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNN 121 Query: 127 SIKVPEDLNKGKRVSVQVGTKSVGYLKDN--------FPGVERVEVEKNQAMFDLLATGR 178 +K +DL+ GK V+V+ GT SV Y K N FP ++ +E L T R Sbjct: 122 DVKSVKDLD-GKVVAVKSGTGSVDYAKANIKTKDLRQFPNIDNAYME--------LGTNR 172 Query: 179 VNAVVTGRPAAVEYART--QPLVRVLDKGLTTELYGFALRKSDTELTAQLNKALQTLRMN 236 +AV+ P + + +T + + L + YG A K EL ++N AL+TLR N Sbjct: 173 ADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLREN 232 Query: 237 GTYTALTDKWFG 248 GTY + KWFG Sbjct: 233 GTYNEIYKKWFG 244 >ZglnH [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain EcZ Escherichia coli O157:H7 EDL933 Length = 248 Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 92/252 (36%), Positives = 139/252 (55%), Gaps = 21/252 (8%) Query: 7 LLCAGMASLSLLIAAVPAAHANGEVIRVGTDATFPPMEFVKDGKRTGFDVELIEALAKTM 66 +L +A+L+L A ++HA + + V TD F P EF + K GFDV+L A+AK + Sbjct: 4 VLKVSLAALTLAFAV--SSHAADKKLVVATDTAFVPFEFKQGDKYVGFDVDLWAAIAKEL 61 Query: 67 GKKVQWIDIDFKGLIPGLVSNRFDIAASAIYMTDERRKVVNFSDPYYRGGLAVLVRRDDN 126 + +DF G+IP L + D+A + I +TDER+K ++FSD YY+ GL V+V+ ++N Sbjct: 62 KLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNN 121 Query: 127 SIKVPEDLNKGKRVSVQVGTKSVGYLKDN--------FPGVERVEVEKNQAMFDLLATGR 178 +K +DL+ GK V+V+ GT SV Y K N FP ++ +E L T R Sbjct: 122 DVKSVKDLD-GKVVAVKSGTGSVDYAKANIKTKDLRQFPNIDNAYME--------LGTNR 172 Query: 179 VNAVVTGRPAAVEYART--QPLVRVLDKGLTTELYGFALRKSDTELTAQLNKALQTLRMN 236 +AV+ P + + +T + + L + YG A K EL ++N AL+TLR N Sbjct: 173 ADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLREN 232 Query: 237 GTYTALTDKWFG 248 GTY + KWFG Sbjct: 233 GTYNEIYKKWFG 244 >ECs0889 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Ecs Escherichia coli O157:H7 Length = 248 Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 92/252 (36%), Positives = 139/252 (55%), Gaps = 21/252 (8%) Query: 7 LLCAGMASLSLLIAAVPAAHANGEVIRVGTDATFPPMEFVKDGKRTGFDVELIEALAKTM 66 +L +A+L+L A ++HA + + V TD F P EF + K GFDV+L A+AK + Sbjct: 4 VLKVSLAALTLAFAV--SSHAADKKLVVATDTAFVPFEFKQGDKYVGFDVDLWAAIAKEL 61 Query: 67 GKKVQWIDIDFKGLIPGLVSNRFDIAASAIYMTDERRKVVNFSDPYYRGGLAVLVRRDDN 126 + +DF G+IP L + D+A + I +TDER+K ++FSD YY+ GL V+V+ ++N Sbjct: 62 KLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNN 121 Query: 127 SIKVPEDLNKGKRVSVQVGTKSVGYLKDN--------FPGVERVEVEKNQAMFDLLATGR 178 +K +DL+ GK V+V+ GT SV Y K N FP ++ +E L T R Sbjct: 122 DVKSVKDLD-GKVVAVKSGTGSVDYAKANIKTKDLRQFPNIDNAYME--------LGTNR 172 Query: 179 VNAVVTGRPAAVEYART--QPLVRVLDKGLTTELYGFALRKSDTELTAQLNKALQTLRMN 236 +AV+ P + + +T + + L + YG A K EL ++N AL+TLR N Sbjct: 173 ADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLREN 232 Query: 237 GTYTALTDKWFG 248 GTY + KWFG Sbjct: 233 GTYNEIYKKWFG 244 >CAC3620 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Cac Clostridium acetobutylicum Length = 264 Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 129/224 (57%), Gaps = 12/224 (5%) Query: 32 IRVGTDATFPPMEFVKD---GKRTGFDVELIEALAKTMGKKVQWIDIDFKGLIPGLVSNR 88 I +G D T+PPMEF KD GK +GFD+++ A+AK +G K +++ F G+ L S + Sbjct: 42 IVIGIDDTYPPMEF-KDKATGKVSGFDIDMANAIAKKLGVKTKFVPNSFDGIFLALKSKK 100 Query: 89 FDIAASAIYMTDERRKVVNFSDPYYRGGLAVLVRRDDNSIKVPEDLNKGKRVSVQVGTKS 148 FD+ S+I +TDER+K + FSDPY GG A+ V+ D+ +IK +D N + V +VGT + Sbjct: 101 FDVVHSSISITDERKKAMIFSDPYIYGGNAIFVKSDNTTIKNEKDFN-NQVVGCEVGTTA 159 Query: 149 VGYLKDNFPGVERVEVEKNQAMFDL---LATGRVNAVVTGRPAAVEYARTQP-LVRVLDK 204 L G++ EV+K AM D L GR+ AVV+ Y T P + L+ Sbjct: 160 QDVLA-KISGIK--EVKKYNAMTDAFLDLQNGRIAAVVSDPMVGDYYNVTDPGKFKKLES 216 Query: 205 GLTTELYGFALRKSDTELTAQLNKALQTLRMNGTYTALTDKWFG 248 LT E G A RK D L NKA++ L+ +GT + L+ KWFG Sbjct: 217 SLTQEPIGVAFRKEDKSLRDAYNKAIKELKKDGTMSKLSKKWFG 260 >TM0593 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Tma Thermotoga maritima Length = 246 Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 91/249 (36%), Positives = 144/249 (57%), Gaps = 10/249 (4%) Query: 6 KLLCAGMASLSLLI--AAVPAAHANGEVIRVGTDATFPPMEFV-KDGKRTGFDVELIEAL 62 KLL + +S++I A+ + G ++ VG A FPP EFV ++G GFDV+L + + Sbjct: 3 KLLAVSILLVSIVIFSGAIDEIKSRGYLL-VGLSADFPPFEFVDENGNIVGFDVDLAKEI 61 Query: 63 AKTMGKKVQWIDIDFKGLIPGLVSNRFDIAASAIYMTDERRKVVNFSDPYYRGGLAVLVR 122 A+ +G +++ +D+ F GLIP L++ + D+ S + +T+ER+KVV FSDPY+ G ++VR Sbjct: 62 ARRLGVELKIVDMTFDGLIPSLLTKKIDVIISGMTITEERKKVVAFSDPYFDAGQVIVVR 121 Query: 123 RD-DNSIKVPEDLNKGKRVSVQVGTKSVGYLK-DNFPGVERVEVEKNQAMFDLLATGRVN 180 +D D K EDL GK V+VQ+GT G ++ + G++ V +K F L GR + Sbjct: 122 KDSDFRPKTYEDL-VGKTVAVQIGT--TGDIEVSKYDGIKVVRFDKFTDAFLELKRGRAD 178 Query: 181 AVVTGRPAAVEYARTQPLVRVLDKGLTTELYGFALRKSDTELTAQLNKALQTLRMNGTYT 240 AVV A + P + + L++E YG A+RK DT+L +N L+ L+ Y Sbjct: 179 AVVLDSATARAFVAKNPDLVISSGVLSSEQYGIAVRKEDTDLLEFINSVLRELK-KSPYD 237 Query: 241 ALTDKWFGK 249 L +KWF + Sbjct: 238 VLIEKWFSE 246 >YPO2512 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Ype Yersinia pestis Length = 247 Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 85/232 (36%), Positives = 130/232 (56%), Gaps = 21/232 (9%) Query: 27 ANGEVIRVGTDATFPPMEFVKDGKRTGFDVELIEALAKTMGKKVQWIDIDFKGLIPGLVS 86 A E+I V TD F P EF + K GFD++L +A+AK + K +DF G+IP L + Sbjct: 23 AEKELI-VATDTAFVPFEFKQGDKYVGFDIDLWDAIAKKLDLKYTLKPMDFSGIIPALQT 81 Query: 87 NRFDIAASAIYMTDERRKVVNFSDPYYRGGLAVLVRRDDNSIKVPEDLNKGKRVSVQVGT 146 D+A + I +TDER+K V+FSD YY GL V+V+ D+N IK DL +GK ++V+ GT Sbjct: 82 KNVDLALAGITITDERKKAVDFSDGYYNSGLLVMVKADNNDIKSEADL-QGKVLAVKSGT 140 Query: 147 KSVGYLKDN--------FPGVERVEVEKNQAMFDLLATGRVNAVVTGRPAAVEYART--Q 196 SV Y K N FP ++ +E L TGR +AV+ P + + +T Sbjct: 141 GSVDYAKANIKTKDLRQFPNIDNAYLE--------LGTGRADAVLHDTPNILYFIKTAGN 192 Query: 197 PLVRVLDKGLTTELYGFALRKSDTELTAQLNKALQTLRMNGTYTALTDKWFG 248 + + + + + YG A + ++L ++N AL++L+ +GTY + KWFG Sbjct: 193 GQFKAVGESIKAQQYGVAFPQG-SDLREKVNAALKSLKEDGTYAEIYKKWFG 243 >CAC0380 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Cac Clostridium acetobutylicum Length = 272 Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 121/223 (54%), Gaps = 9/223 (4%) Query: 31 VIRVGTDATFPPMEFV-KDGKRTGFDVELIEALAKTMGKKVQWIDIDFKGLIPGLVSNRF 89 V++VG +PPMEF + K +GFD+++I A+ K MG KVQ + F G+ L + +F Sbjct: 45 VLKVGLSDDYPPMEFRDSNNKVSGFDIDMINAIGKKMGVKVQIVTNSFDGIFVALKAKKF 104 Query: 90 DIAASAIYMTDERRKVVNFSDPYYRGGLAVLVRRDDNSIKVPEDLNKGKRVSVQVGTKSV 149 D+ S + +TDER+ + FSDPY GG+AV V++ + +IK PEDL KGK V Q GT + Sbjct: 105 DMVQSCVSITDERKSTLLFSDPYIYGGVAVFVKKSNTTIKKPEDL-KGKVVGCQAGTTAE 163 Query: 150 GYLKDNFPGVERVEVEKNQAMFDL---LATGRVNAVVTGRPAAVEYARTQP-LVRVLDKG 205 LK F G++ E +K Q D L R+ AVV Y P + K Sbjct: 164 DALK-KFNGLK--ETKKYQQTTDAFLDLENNRIEAVVADPMVGDYYTTKNPGKYEKISKY 220 Query: 206 LTTELYGFALRKSDTELTAQLNKALQTLRMNGTYTALTDKWFG 248 L E G A RK D L KA L+ +GT + L++KWFG Sbjct: 221 LGKEPVGAAFRKQDKTLKDAYQKAYNELKKDGTLSKLSNKWFG 263 >AF0231 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Afu Archaeoglobus fulgidus Length = 264 Score = 132 bits (333), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 136/228 (59%), Gaps = 13/228 (5%) Query: 32 IRVGTDATFPPMEFV--KDGKRTGFDVELIEALAKTMGKKVQWIDIDFKGLIPGLVSNRF 89 + VG+D +PP EF K G+ GFD++L++ +AK MG + ++++ + G+IPGL+++++ Sbjct: 40 LTVGSDIAYPPFEFTDEKTGEYAGFDIDLMKEIAKRMGLEAKFVNTAWDGIIPGLLAHKY 99 Query: 90 DIAASAIYMTDERRKVVNFSDPYYRGGLAVLVRRDDNSIKVPEDLNKGKRVSVQVGTK-- 147 D+ SA+ +T+ER K V+FSDPY+ ++ R D+ I+ EDLN GK V+VQ GT Sbjct: 100 DVICSAMTITEERAKQVDFSDPYFEAKQVIITRADETDIQDVEDLN-GKVVAVQQGTTGD 158 Query: 148 -SVGYLKDNFPGVERVEVEKNQAMFDLLAT---GRVNAVVTGRPAAVEYARTQP-LVRVL 202 + LKD G+ ++E+++ + + L G +A + A A+ P L R++ Sbjct: 159 FAAQRLKDE-KGI-QLEIKRFEGTPEALMAVQKGDADAAIIDNFVAYIAAKENPGLYRIV 216 Query: 203 DKG-LTTELYGFALRKSDTELTAQLNKALQTLRMNGTYTALTDKWFGK 249 + E YG A+ K + L ++N+ L+ ++ +GTY + +KWFG+ Sbjct: 217 ESDEFAPEYYGIAVNKDNPALLEKINEVLKEIKEDGTYDKIYNKWFGE 264 >artJ [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Eco Escherichia coli K12 Length = 243 Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 124/239 (51%), Gaps = 9/239 (3%) Query: 15 LSLLIAAVPAAHANGEVIRVGTDATFPPMEFV-KDGKRTGFDVELIEALAKTMGKKVQWI 73 L+ L+A+ + E I G AT+PP E + + + GFD++L +AL K M + + Sbjct: 6 LAALLASFTFGASAAEKINFGVSATYPPFESIGANNEIVGFDIDLAKALCKQMQAECTFT 65 Query: 74 DIDFKGLIPGLVSNRFDIAASAIYMTDERRKVVNFSDPYYRGGLAVLVRRDDNSIKVPED 133 + F LIP L ++D S + +T ER K V+F+ PYY V+ ++D + K D Sbjct: 66 NHAFDSLIPSLKFRKYDAVISGMDITPERSKQVSFTTPYYENSAVVIAKKD--TYKTFAD 123 Query: 134 LNKGKRVSVQVGTKSVGYLKDNFPGVERVEVEKNQAMFDLLATGRVNAVVTGRPAAVEYA 193 L KGKR+ ++ GT Y++D P V+ V + Q F L GR++ V E+ Sbjct: 124 L-KGKRIGMENGTTHQKYIQDQHPEVKTVSYDSYQNAFIDLKNGRIDGVFGDTAVVNEWL 182 Query: 194 RTQPLVRVLDKGLTTELY-----GFALRKSDTELTAQLNKALQTLRMNGTYTALTDKWF 247 +T P + V + +T Y G A+R + L +LN AL ++ +GTY ++D+WF Sbjct: 183 KTNPQLGVATEKVTDPQYFGTGLGIAVRPDNKALLEKLNNALAAIKADGTYQKISDQWF 241