BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0302.p         (312 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VCA0034 [T] COG1639 Predicted signal transduction protein Vch Vi...    70   5e-12
TM0854 [T] COG1639 Predicted signal transduction protein Tma The...    67   5e-11

>VCA0034 [T] COG1639 Predicted signal transduction protein Vch Vibrio
           cholerae
          Length = 290

 Score = 70.5 bits (171), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 97/201 (48%), Gaps = 14/201 (6%)

Query: 21  LPAPSGVRLKIMQMCQQEDIALPELVAQVQGDPVLAGRLIQIANIPNINKGRMVASVNVE 80
           LP  S V  +++ M  Q D+   +L  ++  D +L  RL+++AN         +A+VN +
Sbjct: 27  LPRLSKVLQELLDMANQPDVDFHQLSKKITLDQILTARLLRMANSAYFGGNGHIATVN-D 85

Query: 81  LLLMVGLHAVRQMALAISLTESARRGDCAEFDYDAFWSRSTAMACAGQALGDLLQVA-PP 139
            ++ VG+ +VR + +A  L+ +  + +    D + +W+ +   A     + +  QV    
Sbjct: 86  AIIRVGIESVRTLVVASVLSSTFPKIET--LDLNDYWTNTFETALIASKIAE--QVGLDK 141

Query: 140 AEMFTIGLLAGIGQLGLASARPKRYGELLLAGAKDAQ----LRAQERESFGFDHLALAAA 195
           +E FT G+L  IG+L + +  P    E  L   K AQ    L AQE E  G     + A 
Sbjct: 142 SETFTTGVLHNIGELMIHTLMPT---EASLIQQKIAQGMDPLSAQE-EVLGISAPRIGAM 197

Query: 196 MMQDWHFPRIFCEAVLHHRDP 216
           + ++W FP    +A+ H  +P
Sbjct: 198 LAKEWKFPSEMVDAIKHFDEP 218


>TM0854 [T] COG1639 Predicted signal transduction protein Tma Thermotoga
           maritima
          Length = 285

 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 93/200 (46%), Gaps = 11/200 (5%)

Query: 21  LPAPSGVRLKIMQMCQQEDIALPELVAQVQGDPVLAGRLIQIANIPNINKGRMVASVNVE 80
           LP+P+ V  +I+ +C + D +  E+   +  D  L+ R++++AN       R + +++ E
Sbjct: 16  LPSPNVVVQRIIAVCSKPDASSTEVANTLMMDASLSARVLKLANSAYYGVPRKITTLS-E 74

Query: 81  LLLMVGLHAVRQMALAISLTESARRGDCAEFDYDAFWSRSTAMACAGQALGDLLQVAPPA 140
            ++++G   VR +AL++   +   +   +  D +  W    A A A + + + +      
Sbjct: 75  AVMILGFKTVRNLALSVFTYDMVFKNSSSGIDREKLWEHFIASAIASETVAETMGYPLKE 134

Query: 141 EMFTIGLLAGIGQLGLASARPKRYGELLLAGAKDAQLRAQE----RESFGF-DHLALAAA 195
           E+F  GLL  +G++         + ++L   AK AQ   +      E  G   H  + A 
Sbjct: 135 EIFIAGLLHDLGKV----VYDLLFSDILETEAKIAQKTKKNLIDIEEELGIPPHSEVGAK 190

Query: 196 MMQDWHFPRIFC-EAVLHHR 214
           +++ W+FP +    A  HH 
Sbjct: 191 LLRKWNFPDLLVLSAEFHHN 210