BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0276.p         (85 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0765 [S] COG4104 Uncharacterized conserved protein Rso Ralsto...   102   2e-22
YPO0866 [S] COG4104 Uncharacterized conserved protein Ype Yersin...    76   2e-14
RSc0961 [S] COG4104 Uncharacterized conserved protein Rso Ralsto...    74   1e-13
RSp0515 [S] COG4104 Uncharacterized conserved protein Rso Ralsto...    72   2e-13
RSp0204 [S] COG4104 Uncharacterized conserved protein Rso Ralsto...    71   6e-13
PA1508 [S] COG4104 Uncharacterized conserved protein Pae Pseudom...    70   2e-12
RSc3217 [S] COG4104 Uncharacterized conserved protein Rso Ralsto...    69   3e-12

>RSp0765 [S] COG4104 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 89

 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 65/86 (75%), Gaps = 3/86 (3%)

Query: 1  MSQPVIVLGDKTSHGGTVIQASGVTMVGGKQVARVGDKVSCPR--HGSTT-IASGDPTMI 57
          M++P I+LGDKT HGG VI ASG T  GGK +A VGDKV+CP+  HG TT I +GDP ++
Sbjct: 1  MTRPFILLGDKTDHGGVVITASGNTTTGGKGIACVGDKVTCPQSGHGGTTVIVTGDPNVV 60

Query: 58 IDGAPVARDGDKTACGAVLIASQATT 83
          IDG   AR GDKTACGA L+ASQ TT
Sbjct: 61 IDGRQAARHGDKTACGATLLASQGTT 86


>YPO0866 [S] COG4104 Uncharacterized conserved protein Ype Yersinia pestis
          Length = 101

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 49/81 (60%)

Query: 5  VIVLGDKTSHGGTVIQASGVTMVGGKQVARVGDKVSCPRHGSTTIASGDPTMIIDGAPVA 64
          VI +GDKT+HGG V+  SG     G  VAR+ D VSCP+HG+T I    P+   +G PVA
Sbjct: 17 VICIGDKTTHGGQVLSGSGKMKFAGIGVARLNDPVSCPQHGNTFIIEAHPSFKDNGIPVA 76

Query: 65 RDGDKTACGAVLIASQATTSV 85
            G +  CG  LI+SQ   +V
Sbjct: 77 FHGHRCGCGCTLISSQKGATV 97


>RSc0961 [S] COG4104 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 88

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 3  QPVIVLGDKTSHGGTVIQASGVTM-VGGKQVARVGDKVSCPR--HGSTTIASGDPTMIID 59
          + +I LGD T HGG VIQ +     V G  VAR GD+ SCPR  H    I  GD    +D
Sbjct: 2  RQIIRLGDSTDHGGKVIQTAARQFKVDGVPVARKGDRCSCPREGHQDCVIIEGDEHFKVD 61

Query: 60 GAPVARDGDKTACGAVLIASQAT 82
          G PVA +G KT+CGA+LIA+ AT
Sbjct: 62 GVPVAFEGHKTSCGAMLIATVAT 84


>RSp0515 [S] COG4104 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 88

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 48/78 (61%), Gaps = 3/78 (3%)

Query: 5  VIVLGDKTSHGGTVIQASGVTM-VGGKQVARVGDKVSCPR--HGSTTIASGDPTMIIDGA 61
          +I LGD T HGG V+Q S     V G  VAR GD+ SCPR  H    I  GD    +DG 
Sbjct: 4  IIRLGDPTDHGGAVVQTSAPNFKVNGIAVARKGDRCSCPREGHQDCVIIEGDEHFKVDGV 63

Query: 62 PVARDGDKTACGAVLIAS 79
          PVA +G +T+CGAVLIA+
Sbjct: 64 PVAFEGHRTSCGAVLIAT 81


>RSp0204 [S] COG4104 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 88

 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 5  VIVLGDKTSHGGTVIQASGVTM-VGGKQVARVGDKVSCPR--HGSTTIASGDPTMIIDGA 61
          VI LGD T HGG V+Q S     V G  VAR GD+ SCPR  H    I  GD    +DG 
Sbjct: 4  VIRLGDPTEHGGAVVQTSAPNFKVNGVAVARKGDRCSCPRKGHQDCVIIEGDEHFKVDGV 63

Query: 62 PVARDGDKTACGAVLIASQAT 82
          P+A +G KT+CGA L A+ A+
Sbjct: 64 PIAFEGHKTSCGATLTATVAS 84


>PA1508 [S] COG4104 Uncharacterized conserved protein Pae Pseudomonas
          aeruginosa
          Length = 86

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 5  VIVLGDKTSHGGTVIQASGVTMVGGKQVARVGDKVSCPR-HGSTTIASGDPTMIIDGAPV 63
          +I LGD TSHGGTVI+A G T + GK +A VG +V CP   G+  I  G   + ++G PV
Sbjct: 3  IIRLGDTTSHGGTVIEAFGQTDLNGKPMAGVGHQVVCPLCKGTFPITEGSALLDVNGVPV 62

Query: 64 ARDGDKTACGAVLIAS 79
          A  G KTACGA LIAS
Sbjct: 63 ALHGMKTACGASLIAS 78


>RSc3217 [S] COG4104 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 90

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 5  VIVLGDKTSHGGTVIQASGVTMVGGKQVARVGDKVSCP--RHGSTTIASGDPTMIIDGAP 62
          +I +GD TSHGG V   +  + V G+ VAR GD+ SCP   H   TIA GD   I+ G P
Sbjct: 7  IIRVGDATSHGGRVESGAPASTVMGRAVARKGDRCSCPVQGHQDCTIAEGDAAFIVAGQP 66

Query: 63 VARDGDKTACGAVLIAS 79
           A DG  T CGAVLI+S
Sbjct: 67 AAFDGHTTTCGAVLISS 83