BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0259.p         (209 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0742 Non COG                                                       127   2e-29

>RSp0742 Non COG
          Length = 215

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/220 (39%), Positives = 129/220 (58%), Gaps = 21/220 (9%)

Query: 4   NTIKTGLVIPALLL-----AVLSGCANTSSKPGPE-DEAKNTLESGVAKANAAQTEGKTD 57
           N + T  VI +L +     A+++GCA TS   GP+ DEA       +++A+AA   G+ D
Sbjct: 3   NFLLTSRVIRSLAVLASSAALITGCATTS---GPQSDEA---FGKSMSEADAAAKGGQQD 56

Query: 58  EAVSVLKVVAARFPADKTPWVRIAQIRFDSGDYSDAIVNAQEALKRDPTDKVANSIVTVA 117
           +A+ + + +A   P    PWVRIAQI+F S  Y  AI+ A+EAL+RD  D+ A SI+ V+
Sbjct: 57  KAIDLYQQIAKANPTRDEPWVRIAQIQFGSEKYPQAILAAEEALQRDNGDRQAKSILAVS 116

Query: 118 SLRLATKALGDLRTQNALNGSVKTEAQDLTKILRESLGEAALVP--PPAKPPVAKRGRVQ 175
            LR+A ++L +LR  +AL G V+T+AQ L K+LR++LGE AL P   PAK    +R RV 
Sbjct: 117 GLRVARRSLQELRADSALAGDVRTDAQVLAKMLRDTLGEQALFPAEQPAKAQ-PRRARVV 175

Query: 176 RKAAPQPAAPDND------DAGSSAPSSGGSGPNPFGNLK 209
           +++AP      N          + A  +GG   +PFG L+
Sbjct: 176 KRSAPATTEAANHGGAAPAAPATPAAGNGGGSADPFGALR 215