BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0141.p (194 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO1667 [NT] COG0835 Chemotaxis signal transduction protein Ype ... 103 3e-22 STM1920 [NT] COG0835 Chemotaxis signal transduction protein Sty ... 101 1e-21 cheW [NT] COG0835 Chemotaxis signal transduction protein Eco Esc... 100 2e-21 ECs2597 [NT] COG0835 Chemotaxis signal transduction protein Ecs ... 100 2e-21 ZcheW [NT] COG0835 Chemotaxis signal transduction protein EcZ Es... 98 1e-20 RSp1407 [NT] COG0835 Chemotaxis signal transduction protein Rso ... 97 2e-20 PA1464 [NT] COG0835 Chemotaxis signal transduction protein Pae P... 96 6e-20 VCA1094 [NT] COG0835 Chemotaxis signal transduction protein Vch ... 95 7e-20 CAC0119 [NT] COG0835 Chemotaxis signal transduction protein Cac ... 93 4e-19 BB0565 Non COG 92 1e-18 >YPO1667 [NT] COG0835 Chemotaxis signal transduction protein Ype Yersinia pestis Length = 165 Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 49/145 (33%), Positives = 91/145 (62%), Gaps = 4/145 (2%) Query: 23 RQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVVPVIDLSVRFG 82 ++FL F +G E + + I ++EI + +T + PAF++GV NLRG +VP+IDL V+F Sbjct: 17 QEFLIFTLGDEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLRGVIVPIIDLRVKFA 76 Query: 83 RAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFGAGIRADFVD 142 + + T +I++ Q ++G++VD VS VLS+ +QI P P F + +++ Sbjct: 77 QQGVTYNENTVVIVLNFGQR----VVGIVVDGVSDVLSLTNEQIRPAPEFAVTLATEYLT 132 Query: 143 GMINVNERFLVVLDVPRVLSVDELA 167 G+ ++ ER L+++D+ ++LS +E++ Sbjct: 133 GLGSLGERMLILVDIEKLLSSEEMS 157 >STM1920 [NT] COG0835 Chemotaxis signal transduction protein Sty Salmonella typhimurium LT2 Length = 167 Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 90/147 (61%), Gaps = 4/147 (2%) Query: 23 RQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVVPVIDLSVRFG 82 ++FL F +G E + + I ++EI + +T + PAF++GV NLRG +VP++DL V+F Sbjct: 17 QEFLVFTLGNEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLRGVIVPIVDLRVKFC 76 Query: 83 RAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFGAGIRADFVD 142 T +I++ L Q ++G++VD VS VLS+ +QI P P F + +++ Sbjct: 77 EGDVEYDDNTVVIVLNLGQR----VVGIVVDGVSDVLSLTAEQIRPAPEFAVTLSTEYLT 132 Query: 143 GMINVNERFLVVLDVPRVLSVDELASL 169 G+ + ER L+++++ ++L+ +E+A L Sbjct: 133 GLGALGERMLILVNIEKLLNSEEMALL 159 >cheW [NT] COG0835 Chemotaxis signal transduction protein Eco Escherichia coli K12 Length = 167 Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 95/155 (61%), Gaps = 4/155 (2%) Query: 23 RQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVVPVIDLSVRFG 82 ++FL F +G E + + I ++EI + +T + PAF++GV NLRG +VP++DL ++F Sbjct: 17 QEFLVFTLGDEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLRGVIVPIVDLRIKFS 76 Query: 83 RAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFGAGIRADFVD 142 + T +I++ L Q ++G++VD VS VLS+ +QI P P F + +++ Sbjct: 77 QVDVDYNDNTVVIVLNLGQR----VVGIVVDGVSDVLSLTAEQIRPAPEFAVTLSTEYLT 132 Query: 143 GMINVNERFLVVLDVPRVLSVDELASLLGMSAEDA 177 G+ + +R L+++++ ++L+ +E+A L ++E A Sbjct: 133 GLGALGDRMLILVNIEKLLNSEEMALLDSAASEVA 167 >ECs2597 [NT] COG0835 Chemotaxis signal transduction protein Ecs Escherichia coli O157:H7 Length = 167 Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 95/155 (61%), Gaps = 4/155 (2%) Query: 23 RQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVVPVIDLSVRFG 82 ++FL F +G E + + I ++EI + +T + PAF++GV NLRG +VP++DL ++F Sbjct: 17 QEFLVFTLGDEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLRGVIVPIVDLRIKFS 76 Query: 83 RAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFGAGIRADFVD 142 + T +I++ L Q ++G++VD VS VLS+ +QI P P F + +++ Sbjct: 77 QVDVDYNDNTVVIVLNLGQR----VVGIVVDGVSDVLSLTAEQIRPAPEFAVTLSTEYLT 132 Query: 143 GMINVNERFLVVLDVPRVLSVDELASLLGMSAEDA 177 G+ + +R L+++++ ++L+ +E+A L ++E A Sbjct: 133 GLGALGDRMLILVNIEKLLNSEEMALLDSAASEVA 167 >ZcheW [NT] COG0835 Chemotaxis signal transduction protein EcZ Escherichia coli O157:H7 EDL933 Length = 167 Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 94/155 (60%), Gaps = 4/155 (2%) Query: 23 RQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVVPVIDLSVRFG 82 ++FL F +G E + + I ++EI + +T + PAF++GV NLRG +VP++DL ++F Sbjct: 17 QEFLVFTLGDEEYGIDILKVQEIRGYDQVTRIANTPAFIKGVTNLRGVIVPIVDLRIKFS 76 Query: 83 RAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFGAGIRADFVD 142 + T +I++ L Q ++G++VD VS VLS+ +QI P P F + +++ Sbjct: 77 QVDVDYNDNTVVIVLNLGQR----VVGIVVDGVSDVLSLTAEQIRPAPEFAVTLSTEYLT 132 Query: 143 GMINVNERFLVVLDVPRVLSVDELASLLGMSAEDA 177 G+ + +R L+++++ ++L+ + +A L ++E A Sbjct: 133 GLGALGDRMLILVNIEKLLNSEXMALLDSAASEVA 167 >RSp1407 [NT] COG0835 Chemotaxis signal transduction protein Rso Ralstonia solanacearum Length = 163 Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 97/173 (56%), Gaps = 14/173 (8%) Query: 12 RRRAQEEVVESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSV 71 ++ A E ++L F +G E + + I ++EI + +T + P F++GVINLRG + Sbjct: 4 KKHAIGEETGGEEYLAFTLGREEYGIDILKVQEIRGYETVTRIANAPEFIKGVINLRGII 63 Query: 72 VPVIDLSVRFGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPS 131 VP++DL ++F + T +II+ L ++G++VD VS VL++ QI+P P Sbjct: 64 VPIVDLRIKFELERVEYNQYTVVIILNLTDR----VVGIVVDGVSDVLTLQSQQIKPAPE 119 Query: 132 FGAGIRADFVDGMINVNERFLVVLDVPRVLSVDELASLLGMSAEDALGGGPEA 184 F + +++ G+ +++ER L+++D+ ++L MSA+ AL EA Sbjct: 120 FSGALDTEYIRGLGSIDERMLILVDIEKLL----------MSADMALCDEAEA 162 >PA1464 [NT] COG0835 Chemotaxis signal transduction protein Pae Pseudomonas aeruginosa Length = 159 Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 93/146 (63%), Gaps = 4/146 (2%) Query: 24 QFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVVPVIDLSVRFGR 83 Q++TF + ES+ + + ++E++ ++ + VP P+++ G+INLRG+VV VID RFG Sbjct: 15 QWVTFRLDNESYGINVMQVQEVLRYTEIAPVPGAPSYVLGIINLRGNVVTVIDTRQRFGL 74 Query: 84 APTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFGAGIRADFVDG 143 P V+ T I+I+E D+Q ++G++VD+V+ V+ + +IE P+ G A F+ G Sbjct: 75 DPAPVSDNTRIVIIE--ADKQ--VVGILVDSVAEVVYLKQSEIETAPNVGNEESAKFIQG 130 Query: 144 MINVNERFLVVLDVPRVLSVDELASL 169 + N N L+++++ ++++ +E + L Sbjct: 131 VCNKNGELLILVELDKMMTEEEWSEL 156 >VCA1094 [NT] COG0835 Chemotaxis signal transduction protein Vch Vibrio cholerae Length = 175 Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 86/142 (60%), Gaps = 2/142 (1%) Query: 25 FLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVVPVIDLSVRFGRA 84 FL+F++GTE + + ++ + EI + T +P P F++GVINLRG +VP+IDL RFG Sbjct: 30 FLSFMLGTELYGVTLSHVEEIRVWEKPTPIPRAPHFVKGVINLRGMIVPIIDLRQRFGLT 89 Query: 85 PTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFGAGIRADFVDGM 144 T ++I+ ++ EQ+ L+G++VD+VS V IG + P+ G + F+ G+ Sbjct: 90 QYEYLPTTVVLILSAREQEQKRLMGLVVDSVSDV--IGQGDMPLHPAIGESMVVPFLSGI 147 Query: 145 INVNERFLVVLDVPRVLSVDEL 166 +NV + + +LD +L +D + Sbjct: 148 LNVGDEVMSLLDSDALLDMDRI 169 >CAC0119 [NT] COG0835 Chemotaxis signal transduction protein Cac Clostridium acetobutylicum Length = 168 Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 87/154 (56%), Gaps = 5/154 (3%) Query: 16 QEEVVESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVVPVI 75 EE ++ +FL F+ E + + I + EII S ++E+P +P ++ GVINLRG V+PVI Sbjct: 10 NEEDTQNGKFLIFITDGEQYGIEIKHVIEIIGISPISEIPELPQYIMGVINLRGKVIPVI 69 Query: 76 DLSVRFGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFGAG 135 D+ +RF + RTCI+I+ D Q +L+G++VD V VL I ++I P Sbjct: 70 DIRLRFNKIFKEYNDRTCIVII----DVQDMLIGIIVDKVLEVLKISENEIMDPPEISKD 125 Query: 136 IRADFVDGMINVNERFLVVLDVPRVLSVDELASL 169 + ++ + ++ +LD +++S +E+ L Sbjct: 126 -KNGYIKAIGKTHDGMNFILDCGKLISSEEINKL 158 >BB0565 Non COG Length = 180 Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 92/163 (56%), Gaps = 11/163 (6%) Query: 24 QFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVVPVIDLSVRFGR 83 Q+L F + E +A+ I + E++E++ ++++P P ++ G+IN RG +VP+ID+ +FG Sbjct: 13 QYLLFSLD-ELYAIEIKYVVEVLEYTKISKIPRTPNYMAGIINNRGKIVPIIDIRKQFGM 71 Query: 84 APTVV----AKR------TCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFG 133 + V KR + III+ L + + LG++VD V+ VL + I+ P G Sbjct: 72 SDRAVDEDDKKRNKGVNISNIIILNLVYEGDEFNLGILVDYVNEVLELDPFSIDDAPKIG 131 Query: 134 AGIRADFVDGMINVNERFLVVLDVPRVLSVDELASLLGMSAED 176 +G + F+ G+ N++F+++L+V + V EL+ + D Sbjct: 132 SGFNSKFISGIGKSNDKFIIILNVENLFDVRELSKFRNTTIYD 174