BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0122.p (231 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1964 [U] COG0811 Biopolymer transport proteins Rso Ralstonia ... 196 5e-50 XF0010 [U] COG0811 Biopolymer transport proteins Xfa Xylella fas... 181 9e-46 NMB1729 [U] COG0811 Biopolymer transport proteins Nme Neisseria ... 155 8e-38 NMA1984 [U] COG0811 Biopolymer transport proteins NmA Neisseria ... 155 8e-38 PA0198 [U] COG0811 Biopolymer transport proteins Pae Pseudomonas... 143 4e-34 RC0422 [U] COG0811 Biopolymer transport proteins Rco Rickettsia ... 111 1e-24 RP309 [U] COG0811 Biopolymer transport proteins Rpr Rickettsia p... 111 1e-24 PM0970 [U] COG0811 Biopolymer transport proteins Pmu Pasteurella... 101 2e-21 CC3233 [U] COG0811 Biopolymer transport proteins Ccr Caulobacter... 100 2e-21 Cj0179 [U] COG0811 Biopolymer transport proteins Cje Campylobact... 99 6e-21 >RSc1964 [U] COG0811 Biopolymer transport proteins Rso Ralstonia solanacearum Length = 243 Score = 196 bits (497), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 116/227 (51%), Positives = 148/227 (65%), Gaps = 8/227 (3%) Query: 3 QNIGFAHYWAQGDAVSHSVAYLLLIMSIASWYYILSKAWAAWRIRRGSNALE-RFWQAPT 61 Q +G +H W QGD V+ A LLL+MS+ASW IL+KAW R++ + E RFW + Sbjct: 2 QELGLSHLWTQGDIVARGTALLLLLMSLASWIVILTKAWDLIRLKSMAQGAEKRFWHSD- 60 Query: 62 LADATAAMQRLDS--EQIYTPMAERAAEAADIGTRQQGTPSLNAATDPGELITRTLRREI 119 D AM L S + + +A+ EAA + P L+ D + ITR+L+ I Sbjct: 61 --DFDHAMHTLGSPKDNPFYALAQTGREAAQ--HHRASHPQLHDVMDISDWITRSLKSAI 116 Query: 120 NRVSARLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALI 179 + +++ GL +LASVGSTAPFVGLFGTVWGIYHAL+ + A G IDKVAGPVGE+LI Sbjct: 117 DESVGQMQSGLAVLASVGSTAPFVGLFGTVWGIYHALIGIGAVGVPTIDKVAGPVGESLI 176 Query: 180 MTALGLLVAIPAVLAYNAFTRINRVVLAELDGFAHDLHAYLTTGERV 226 MTA GL VAIPAVL YNA TR N+ V+A+L+ FAHDLHAY TG R+ Sbjct: 177 MTAFGLAVAIPAVLGYNALTRGNKSVIAKLNRFAHDLHAYFVTGARL 223 >XF0010 [U] COG0811 Biopolymer transport proteins Xfa Xylella fastidiosa 9a5c Length = 254 Score = 181 bits (460), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 99/214 (46%), Positives = 141/214 (65%), Gaps = 3/214 (1%) Query: 16 AVSHSVAYLLLIMSIASWYYILSKAWAAWRIR-RGSNALERFWQAPTLADATAAMQRLDS 74 AVS +V +L+ MS SWY+ + A R++ G + FW+A +A +AM++ + Sbjct: 40 AVSWAVLIILVTMSSLSWYWTVINILRALRLKGAGYLVINAFWKAKNPQEAISAMEKQSA 99 Query: 75 EQIYTPMAERAAEAADIGTRQQGTPS--LNAATDPGELITRTLRREINRVSARLERGLTL 132 + ++ +A AA+AA R +G + L E + R LR+ + R S++L+ G+TL Sbjct: 100 SEPFSKIALDAAQAAAHHQRTEGGNAMGLGERLSLSEFVDRALRQAVTRESSKLQSGMTL 159 Query: 133 LASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMTALGLLVAIPAV 192 LA+VG+TAPFVGL GTVWGIY+AL+ + A+G+ ID VAGPVGEALIMTA+GL VAIPAV Sbjct: 160 LATVGATAPFVGLLGTVWGIYNALITIGATGSASIDAVAGPVGEALIMTAIGLFVAIPAV 219 Query: 193 LAYNAFTRINRVVLAELDGFAHDLHAYLTTGERV 226 A+N F++IN +A+ D FAHDLH + TG RV Sbjct: 220 FAFNFFSKINSSTIAKFDTFAHDLHDFFATGSRV 253 >NMB1729 [U] COG0811 Biopolymer transport proteins Nme Neisseria meningitidis MC58 Length = 220 Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 86/213 (40%), Positives = 127/213 (59%), Gaps = 8/213 (3%) Query: 11 WAQGDAVSHSVAYLLLIMSIASWYYILSKAWAAWRIRRGSNALERFWQAP-TLADATAAM 69 + GD V V L+L+MSI +W ++ + +R R+G+ A++R + +L DA + Sbjct: 7 FESGDPVLIGVFVLMLLMSIVTWCLVVLRCIKLYRARKGNAAVKRHMRDTLSLNDAVEKV 66 Query: 70 QRLDSEQIYTPMAERAAEAADI--GTRQQGTPSLNAATDPGELITRTLRREINRVSARLE 127 + +D+ P+++ A EA R+ L A E + +R + ++ R + Sbjct: 67 RAVDA-----PLSKLAQEALQSYRNYRRNEASELAQALPLNEYLVIQIRNSMAQIMRRFD 121 Query: 128 RGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMTALGLLV 187 G+T LAS+G+TAPF+GLFGTVWGIYHAL+ + SG + I VAGP+GEAL+ TA GL V Sbjct: 122 YGMTALASIGATAPFIGLFGTVWGIYHALINIGQSGQMSIAAVAGPIGEALVATAAGLFV 181 Query: 188 AIPAVLAYNAFTRINRVVLAELDGFAHDLHAYL 220 AIPAVLAYN R +++ +LD AHDLH L Sbjct: 182 AIPAVLAYNFLNRGTKILTQDLDAMAHDLHVRL 214 >NMA1984 [U] COG0811 Biopolymer transport proteins NmA Neisseria meningitidis Z2491 Length = 220 Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 86/213 (40%), Positives = 127/213 (59%), Gaps = 8/213 (3%) Query: 11 WAQGDAVSHSVAYLLLIMSIASWYYILSKAWAAWRIRRGSNALERFWQAP-TLADATAAM 69 + GD V V L+L+MSI +W ++ + +R R+G+ A++R + +L DA + Sbjct: 7 FESGDPVLIGVFVLMLLMSIVTWCLVVLRCIKLYRARKGNAAVKRHMRDTLSLNDAVEKV 66 Query: 70 QRLDSEQIYTPMAERAAEAADI--GTRQQGTPSLNAATDPGELITRTLRREINRVSARLE 127 + +D+ P+++ A EA R+ L A E + +R + ++ R + Sbjct: 67 RAVDA-----PLSKLAQEALQSYRNYRRNEASELAQALPLNEYLVIQIRNSMAQIMRRFD 121 Query: 128 RGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMTALGLLV 187 G+T LAS+G+TAPF+GLFGTVWGIYHAL+ + SG + I VAGP+GEAL+ TA GL V Sbjct: 122 YGMTALASIGATAPFIGLFGTVWGIYHALINIGQSGQMSIAAVAGPIGEALVATAAGLFV 181 Query: 188 AIPAVLAYNAFTRINRVVLAELDGFAHDLHAYL 220 AIPAVLAYN R +++ +LD AHDLH L Sbjct: 182 AIPAVLAYNFLNRGTKILTQDLDAMAHDLHVRL 214 >PA0198 [U] COG0811 Biopolymer transport proteins Pae Pseudomonas aeruginosa Length = 239 Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 82/205 (40%), Positives = 122/205 (59%), Gaps = 5/205 (2%) Query: 15 DAVSHSVAYLLLIMSIASWYYILSKAWAAWRIRRGSNALER-FWQAPTLADATAAMQRLD 73 ++V +V +LL+ S+ +W L K R +R ++ FW A +L +A Q D Sbjct: 9 ESVEGAVIWLLVGFSVVTWGLALVKGVQFARQKRQDRQFQKQFWSATSLD--SAGEQAQD 66 Query: 74 SEQIYTPMAERAAEAADIGTRQQGTPSLNAATDPGELITRTLRREINRVSARLERGLTLL 133 + +A+ A A I + G P L + + + + R LR++I R LE GL +L Sbjct: 67 KQGAGARVAQ--AGFAAIQVQDNGQPDLAQSINHQDRLERALRQQIQRERRSLESGLAVL 124 Query: 134 ASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMTALGLLVAIPAVL 193 AS+GST+PF+GLFGTVWGI AL +SA+G+ ++ VAGP+G ALI T +G+ VA+PAVL Sbjct: 125 ASIGSTSPFIGLFGTVWGIMEALKGISAAGSASLETVAGPIGSALIATGVGIAVAVPAVL 184 Query: 194 AYNAFTRINRVVLAELDGFAHDLHA 218 YN F R ++ A+LD FAHD ++ Sbjct: 185 VYNYFLRRLKLTAADLDDFAHDFYS 209 >RC0422 [U] COG0811 Biopolymer transport proteins Rco Rickettsia conorii Length = 241 Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 112/208 (53%), Gaps = 12/208 (5%) Query: 19 HSVAYLLLIMSIASWYYILSKAWAAWRIRRGSNALER-FWQAPTLADATAAMQRLDSEQI 77 SV +LLI SI SW IL K + ++++ A E FW L +++R + Sbjct: 33 KSVMLMLLIASIWSWAIILDKIFKLVQVQKSMRAFENVFWSGGVLEQLYESIKR----SV 88 Query: 78 YTPMAERAAEAADIGTRQQGTPSLNAA--TDPGELITRTLRREINRVSARLERGLTLLAS 135 P+A A D + T L+ + E IT + NR +LE+ L+ LA+ Sbjct: 89 NNPLALIFVSAMD-ECKSLSTKGLSEGLKNNHKERITGAMYLAQNREVEKLEKNLSFLAT 147 Query: 136 VGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMTALGLLVAIPAVLAY 195 VGS+APFVGLFGTVWGI H+ +++ S + VA + EAL+ TA+GL AIPAV+ Y Sbjct: 148 VGSSAPFVGLFGTVWGIMHSFQSIATSKNTSLAVVAPGIAEALLATAIGLFAAIPAVIFY 207 Query: 196 NAFTRINRVVL--AELDGFAHDLHAYLT 221 N I+R+ L +++ F +L++ L+ Sbjct: 208 NYL--ISRITLINNKIEDFISELNSILS 233 >RP309 [U] COG0811 Biopolymer transport proteins Rpr Rickettsia prowazekii Length = 241 Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 116/224 (51%), Gaps = 8/224 (3%) Query: 1 MEQNIGFAHYWAQGDAVSHSVAYLLLIMSIASWYYILSKAWAAWRIRRGSNALER-FWQA 59 M+ N+ + D + SV +LL SI SW IL K + +++R + E FW Sbjct: 15 MQDNLSILSLISSADIIGKSVMLMLLFASIWSWSIILHKIFRLAQVQRRIQSFENVFWSG 74 Query: 60 PTLADATAAMQRLDSEQIYTPMAERAAEAADIGTRQQGTPSLNAATDPGELITRTLRREI 119 L ++++ + + E + T+ N + E I + Sbjct: 75 CVLEQLYESIKKSVNNPLALIFVSAMNECNSLNTKGFSEALKN---NHKERIMSAMYLAQ 131 Query: 120 NRVSARLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALI 179 NR +LE+ L +LA++GS+APF+GLFGTVWGI H+ ++++S + VA + EAL+ Sbjct: 132 NREIEKLEQNLNVLATIGSSAPFIGLFGTVWGIMHSFQSIASSKNTSLAVVAPGIAEALL 191 Query: 180 MTALGLLVAIPAVLAYNAFTRINRVVLA--ELDGFAHDLHAYLT 221 TA+GL VAIPAV+ YN I+R+ L +++ F +L++ L+ Sbjct: 192 ATAIGLFVAIPAVIFYNYL--ISRITLINNKIEDFISELNSILS 233 >PM0970 [U] COG0811 Biopolymer transport proteins Pmu Pasteurella multocida Length = 229 Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 101/202 (50%), Gaps = 14/202 (6%) Query: 1 MEQNIGFAHYWAQGDAVSHSVAYLLLIMSIASWYYILSKAWAAWRIRRGSNALE-RFWQA 59 M ++ F + + V V +L+I SI SW I+ ++ + + S A E RFW Sbjct: 1 MTADLNFLELFLKASIVVQFVIVILIIFSIMSWAIIIQRSRILTKALKDSAAFEDRFWSG 60 Query: 60 PTLADATAAMQ-RLD----SEQIYTPMAERAAEAADIGTRQQGTPSLNAATDPGELITRT 114 L ++ + D SEQI+ + +Q P+ A G +R Sbjct: 61 EDLNRLFDGLENKRDGLSGSEQIFY------VGFKEFSRLKQANPNAPEAIIQGS--SRA 112 Query: 115 LRREINRVSARLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPV 174 + +NR LE + LA+V S +P++GLFGTVWGI HA +A+S + + VA + Sbjct: 113 MNLAMNREVEELETRVPFLATVASISPYIGLFGTVWGIMHAFMALSGAKQATLQMVAPGI 172 Query: 175 GEALIMTALGLLVAIPAVLAYN 196 EALI TA+GL AIPAV+AYN Sbjct: 173 AEALIATAIGLFAAIPAVMAYN 194 >CC3233 [U] COG0811 Biopolymer transport proteins Ccr Caulobacter vibrioides Length = 232 Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 104/218 (47%), Gaps = 11/218 (5%) Query: 4 NIGFAHYWAQGDAVSHSVAYLLLIMSIASWYYILSKAWAAWRIRRGSNALERFWQAPTLA 63 N F + Q D V SV L++ S+ SW IL K + + R +N E Sbjct: 9 NFSFFALFMQADWVVKSVMIGLILASLGSWAVILDKLFRFQALNRAANRFEE------QV 62 Query: 64 DATAAMQRLDSEQIYTP--MAERAAEAADIGTRQQGTPSLNAATDPGELITRT---LRRE 118 +++ + E P R +AA R + + T G LI R L + Sbjct: 63 SGGRSLEDVAGEAGANPRHALPRMLQAALKEWRDAKSKGAMSETQAGFLIARIDRILDTQ 122 Query: 119 INRVSARLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEAL 178 I R + ++E GL LA V + +PF+GLFGTVWGI HA ++ S + VA + EAL Sbjct: 123 IARETTKVEEGLGSLAIVATASPFIGLFGTVWGIMHAFQNIALSKNTSLAVVAPSIAEAL 182 Query: 179 IMTALGLLVAIPAVLAYNAFTRINRVVLAELDGFAHDL 216 TA+GL+ AIPA +AYN F+ L+GFA DL Sbjct: 183 FATAIGLIAAIPAYIAYNKFSTDAGKYAGRLEGFADDL 220 >Cj0179 [U] COG0811 Biopolymer transport proteins Cje Campylobacter jejuni Length = 253 Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 19/207 (9%) Query: 11 WAQGDAVSHSVAYLLLIMSIASWYYILSKAWAAWRIRRGSN-ALERFWQAPTLA--DATA 67 + D V V Y+L++ SI +W +SK + +++ + ++++ + L D T Sbjct: 48 YQNADEVVKGVIYILVLFSILAWAVFISKLMQFYFMKKNLDLSIQKIKELKNLNELDQTK 107 Query: 68 AMQRLDSEQIYTPMAERAAEAADIGTRQQGTPSLNAATDPGELITRTLRREINRVSARLE 127 + S +I + + + I R I L+ I++ + Sbjct: 108 DFAGVLSLEIQDELEKSEYKNDHIKER----------------IELRLQNTISKQITASK 151 Query: 128 RGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMTALGLLV 187 GL+LLAS+G++APF+GLFGTVWGI +A + ++ G + VA + EAL TA GL+ Sbjct: 152 NGLSLLASIGASAPFIGLFGTVWGIMNAFIGIANLGNASLAVVAPGIAEALFATAFGLIA 211 Query: 188 AIPAVLAYNAFTRINRVVLAELDGFAH 214 AIPAVL YN TR N ++ LD A+ Sbjct: 212 AIPAVLFYNYLTRKNLKLMHHLDELAN 238