BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0109.p (141 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2740 [S] COG1981 Predicted membrane protein Rso Ralstonia sol... 188 3e-48 PA0661 [S] COG1981 Predicted membrane protein Pae Pseudomonas ae... 136 2e-32 NMB0310 [S] COG1981 Predicted membrane protein Nme Neisseria men... 121 6e-28 NMA2177 [S] COG1981 Predicted membrane protein NmA Neisseria men... 120 7e-28 HP1484 [S] COG1981 Predicted membrane protein Hpy Helicobacter p... 94 8e-20 BMEI0002 [S] COG1981 Predicted membrane protein Bme Brucella mel... 92 3e-19 mll4486 [S] COG1981 Predicted membrane protein Mlo Mesorhizobium... 91 6e-19 jhp1377 [S] COG1981 Predicted membrane protein jHp Helicobacter ... 90 2e-18 XF0202 [S] COG1981 Predicted membrane protein Xfa Xylella fastid... 89 3e-18 AGc5138 [S] COG1981 Predicted membrane protein Atu Agrobacterium... 88 4e-18 >RSc2740 [S] COG1981 Predicted membrane protein Rso Ralstonia solanacearum Length = 140 Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 94/141 (66%), Positives = 115/141 (81%), Gaps = 1/141 (0%) Query: 1 MLWIKALHIVFIASWFAGLFYLPRIFVNLAQETEVASRERLLGMARRLYRFTGMISLVAL 60 MLW+KA HIVF+ASWFAGLFYLPRIFVNLA ET+ A+ RLL MAR+L+RFT ++++VA+ Sbjct: 1 MLWVKAFHIVFVASWFAGLFYLPRIFVNLAMETQPAAVTRLLLMARKLFRFTTLLAIVAI 60 Query: 61 ALGVWLLVLTWQFWKGPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHVWYRW 120 LG+WL L ++ P NGW+HAKL LV++ IGY H CG LL+KFE G N RSH +YRW Sbjct: 61 VLGLWLF-LGYRIGLVPPNGWMHAKLALVLVAIGYHHGCGVLLRKFEAGANKRSHTFYRW 119 Query: 121 FNEVPVLLMLAIVILVVVKPF 141 FNE+PVLL+LAI ILVVVKPF Sbjct: 120 FNELPVLLLLAITILVVVKPF 140 >PA0661 [S] COG1981 Predicted membrane protein Pae Pseudomonas aeruginosa Length = 140 Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/144 (58%), Positives = 104/144 (72%), Gaps = 10/144 (6%) Query: 2 LWIKALHIVFIASWFAGLFYLPRIFVNLAQETEVASRERLLGMARRLYRFTGMISLVA-L 60 +W+KA HI+ + WFAGLFYLPR+FV A + SRER M R+LYR M S++A L Sbjct: 3 MWLKAFHIIAVVCWFAGLFYLPRLFVYHAMSEDQTSRERFCVMERKLYRGIMMPSMLATL 62 Query: 61 ALGVWLLVLTWQFWKGPG---NGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHVW 117 LG+W+L LT PG GWLHAKL LVVL+IGY HACG++LK+F G+ RSHV+ Sbjct: 63 VLGLWMLYLT------PGWLSQGWLHAKLTLVVLLIGYHHACGAMLKRFARGEPGRSHVF 116 Query: 118 YRWFNEVPVLLMLAIVILVVVKPF 141 YRWFNEVPVL +L IV+LVV+KPF Sbjct: 117 YRWFNEVPVLFLLLIVLLVVLKPF 140 >NMB0310 [S] COG1981 Predicted membrane protein Nme Neisseria meningitidis MC58 Length = 142 Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 69/142 (48%), Positives = 90/142 (63%), Gaps = 7/142 (4%) Query: 3 WIKALHIVFIASWFAGLFYLPRIFVNLAQ-ETEVASRE--RLLGMARRLYRFTGMISLVA 59 W K H+ F+ SWFAGLFYLPRIFVN+A + + E RL GMA RLYRF + A Sbjct: 5 WFKLFHLFFVISWFAGLFYLPRIFVNMAMIDVPRGNPEYVRLSGMAVRLYRFMSPLGFGA 64 Query: 60 LALGVWLLVLTWQFWKGPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHVWYR 119 + G + +W G+GW+H KL L ++++ YQ CG LL++F+ N SH WYR Sbjct: 65 VVFGA-AIPFAAGWW---GSGWVHVKLCLGLMLLAYQLYCGVLLRRFQDYSNAFSHRWYR 120 Query: 120 WFNEVPVLLMLAIVILVVVKPF 141 FNE+PVLLM+A + LVV KPF Sbjct: 121 VFNEIPVLLMVAALYLVVFKPF 142 >NMA2177 [S] COG1981 Predicted membrane protein NmA Neisseria meningitidis Z2491 Length = 145 Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 69/142 (48%), Positives = 90/142 (63%), Gaps = 7/142 (4%) Query: 3 WIKALHIVFIASWFAGLFYLPRIFVNLAQ-ETEVASRE--RLLGMARRLYRFTGMISLVA 59 W K H+ F+ SWFAGLFYLPRIFVN+A + + E RL GMA RLYRF + A Sbjct: 8 WFKLFHLFFVISWFAGLFYLPRIFVNMAMIDVPRGNPEYVRLSGMAVRLYRFMSPLGFGA 67 Query: 60 LALGVWLLVLTWQFWKGPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHVWYR 119 + G + +W G+GW+H KL L ++++ YQ CG LL++F+ N SH WYR Sbjct: 68 VVFGA-AIPFAAGWW---GSGWVHVKLCLGLMLLAYQLYCGVLLRRFQDYSNAFSHRWYR 123 Query: 120 WFNEVPVLLMLAIVILVVVKPF 141 FNE+PVLLM+A + LVV KPF Sbjct: 124 VFNEIPVLLMVAALYLVVFKPF 145 >HP1484 [S] COG1981 Predicted membrane protein Hpy Helicobacter pylori 26695 Length = 148 Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 60/145 (41%), Positives = 87/145 (60%), Gaps = 10/145 (6%) Query: 2 LWIKALHIVFIASWFAGLFYLPRIFVNLAQETEVASRERLLGM----ARRLYRFTGMISL 57 LW+KA H++ + SW A LFYLPR+FV A E A ++ +G+ ++LY F ++ Sbjct: 9 LWVKAFHVIAVISWMAALFYLPRLFVYHA---ENAHKKEFVGVVQIQEKKLYSFIASPAM 65 Query: 58 -VALALGVWLLVLTWQFWKGPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHV 116 L G+ +L++ +K GWLHAKL LVVL++ Y C +++ E R+ Sbjct: 66 GFTLITGILMLLIEPTLFKS--GGWLHAKLALVVLLLAYHFYCKKCMRELEKDPTRRNAR 123 Query: 117 WYRWFNEVPVLLMLAIVILVVVKPF 141 +YR FNE P +LM+ IVILVVVKPF Sbjct: 124 FYRVFNEAPTILMILIVILVVVKPF 148 >BMEI0002 [S] COG1981 Predicted membrane protein Bme Brucella melitensis Length = 154 Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/143 (39%), Positives = 81/143 (56%), Gaps = 8/143 (5%) Query: 2 LWIKALHIVFIASWFAGLFYLPRIFV-NLAQETEVASRERLLGMARRLYRFTGMISLVAL 60 LW+KALH++ + SW AG+ YLPR+FV + + + + E M +RL RF ++ Sbjct: 17 LWVKALHVIAVISWMAGMLYLPRLFVYHCSAQPGSVTSETFKVMEKRLLRF-----IINP 71 Query: 61 ALGVWLLVLTWQFWK--GPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHVWY 118 A+ V + W W+ G GWLHAKL LVVL+ G + F +N+ S + Sbjct: 72 AMVVTWITGLWMAWEIFGFQGGWLHAKLLLVVLMSGVHGYLSKSTRIFAEDRNMSSAKHW 131 Query: 119 RWFNEVPVLLMLAIVILVVVKPF 141 R NEVP +LM+ IVIL +VKPF Sbjct: 132 RIINEVPTVLMILIVILAIVKPF 154 >mll4486 [S] COG1981 Predicted membrane protein Mlo Mesorhizobium loti Length = 162 Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/140 (42%), Positives = 82/140 (58%), Gaps = 4/140 (2%) Query: 3 WIKALHIVFIASWFAGLFYLPRIFV-NLAQETEVASRERLLGMARRLYRFTGMISLVALA 61 W KA+HI+ + SW AG+ YLPR+FV ++ E E M RRL R G+I+ + Sbjct: 26 WAKAIHILAVISWMAGMLYLPRLFVYHVDAEKGSVQSETFKVMERRLLR--GIINPAMIV 83 Query: 62 LGVWLLVLTWQFWKGPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHVWYRWF 121 V+ L L W+ + G GWLHAK+ LV+L+ ++KF +N + +R Sbjct: 84 TWVFGLWLAWKVF-GFQGGWLHAKIGLVLLLSAVHGYLAGAVRKFAEDRNEKPARHWRIV 142 Query: 122 NEVPVLLMLAIVILVVVKPF 141 NE+P LLM+AIVILVVVKPF Sbjct: 143 NEIPTLLMIAIVILVVVKPF 162 >jhp1377 [S] COG1981 Predicted membrane protein jHp Helicobacter pylori J99 Length = 148 Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/145 (40%), Positives = 89/145 (61%), Gaps = 10/145 (6%) Query: 2 LWIKALHIVFIASWFAGLFYLPRIFVNLAQETEVASRERLLGM----ARRLYRFTGMISL 57 LW+KA H++ + SW A LFYLPR+FV A E A ++ +G+ ++LY F ++ Sbjct: 9 LWVKAFHVIAVISWMAALFYLPRLFVYHA---ENAHKKEFVGVVQIQEKKLYSFIASPAM 65 Query: 58 -VALALGVWLLVLTWQFWKGPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHV 116 L G+ +L++ + +K GWLHAKL LVVL++ Y C +++ E ++ Sbjct: 66 GFTLITGILMLLIAPEMFKS--GGWLHAKLALVVLLLIYHFYCKKCMRELEKDPTGKNAR 123 Query: 117 WYRWFNEVPVLLMLAIVILVVVKPF 141 +YR FNE+P +LM+ IVILVVVKPF Sbjct: 124 FYRVFNEIPTILMILIVILVVVKPF 148 >XF0202 [S] COG1981 Predicted membrane protein Xfa Xylella fastidiosa 9a5c Length = 150 Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 6/145 (4%) Query: 3 WIKALHIVFIASWFAGLFYLPRIFVNLAQ-ETEVASRERLLGMARRLYRFTGMI-----S 56 W+K H++F+ +W A +FYLPRI VN+A+ + + A + RL M RRLY F ++ Sbjct: 6 WVKTFHLLFVIAWMAAVFYLPRILVNVAETDGQPAVQARLRQMGRRLYIFGHIMFGLSGL 65 Query: 57 LVALALGVWLLVLTWQFWKGPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHV 116 L L + ++ + G G+GWLHAK+ LVVL++ + G LK+ E G + Sbjct: 66 LGVLLWLGYRVIPAFPTMVGDGSGWLHAKVGLVVLILVHYIVAGYWLKRAERGGVLPGAG 125 Query: 117 WYRWFNEVPVLLMLAIVILVVVKPF 141 R FNE+PVL+++ I+ LV KPF Sbjct: 126 ALRVFNEIPVLVLIGILWLVFAKPF 150 >AGc5138 [S] COG1981 Predicted membrane protein Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 181 Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/143 (41%), Positives = 81/143 (56%), Gaps = 8/143 (5%) Query: 2 LWIKALHIVFIASWFAGLFYLPRIFVNLAQETEVASR--ERLLGMARRLYR-FTGMISLV 58 LWIKALHI+ + SW A +FYLPR+F+ + V S+ E M +RL R ++ Sbjct: 43 LWIKALHIIAVISWMAAIFYLPRLFI-YHTDAPVGSQQSETFKVMEQRLIRVIMNPAMMI 101 Query: 59 ALALGVWLLVLTWQFWKGPGNGWLHAKLFLVVLVIGYQHACGSLLKKFEHGKNVRSHVWY 118 + LG++L W + G GWLHAK+ LV+L+ K+F +N R + Sbjct: 102 SWTLGLYL---AWSVY-GFSGGWLHAKIGLVLLLTATHVYFSRSAKRFARDENTRPARHW 157 Query: 119 RWFNEVPVLLMLAIVILVVVKPF 141 R NEVP +LM+ IVILVVVKPF Sbjct: 158 RLMNEVPTVLMILIVILVVVKPF 180