BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0046.p (193 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2910 [S] COG1971 Predicted membrane protein Pae Pseudomonas ae... 228 4e-60 yebN [S] COG1971 Predicted membrane protein Eco Escherichia coli... 210 2e-54 STM1834 [S] COG1971 Predicted membrane protein Sty Salmonella ty... 210 2e-54 ECs2531 [S] COG1971 Predicted membrane protein Ecs Escherichia c... 210 2e-54 Z2864 [S] COG1971 Predicted membrane protein EcZ Escherichia col... 209 3e-54 YPO1754 [S] COG1971 Predicted membrane protein Ype Yersinia pestis 200 2e-51 NMB0215 [S] COG1971 Predicted membrane protein Nme Neisseria men... 176 3e-44 NMA0052 [S] COG1971 Predicted membrane protein NmA Neisseria men... 162 3e-40 XF2257 [S] COG1971 Predicted membrane protein Xfa Xylella fastid... 153 2e-37 Cj0167c Non COG 133 2e-31 >PA2910 [S] COG1971 Predicted membrane protein Pae Pseudomonas aeruginosa Length = 189 Score = 228 bits (582), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 119/191 (62%), Positives = 148/191 (77%), Gaps = 2/191 (1%) Query: 1 MNFPALVLLALAMSTDAFAAAIGKGAAMQKPRFLQALRIGLLFGVIEAITPLIGWFAGSV 60 MN +L+ LA AMSTDAFAAAIGKG+++ +PR +ALR G++FGVIEAITPL+GW G Sbjct: 1 MNPVSLIFLAFAMSTDAFAAAIGKGSSLDRPRLSEALRTGIIFGVIEAITPLVGWLLGQA 60 Query: 61 ATKWVSQWDHWIAFTLLLVLGVRMIREGMSDDDEDEDASAAPQKQSVVMLALTAVATSID 120 A+++V+ WDHWIAF LL++LG+ MI G+ D E P + S +LA+TA+ATSID Sbjct: 61 ASQFVADWDHWIAFVLLVLLGLHMIHNGLRADHATEQEK--PGQHSFWILAVTALATSID 118 Query: 121 AMAVGVGLAFIDVNILEAALLIGLATTTMVTIGVMVGRVLGHLIGKRAEIIGGVVLIGVG 180 A+AVGVGLAF+DVNI AA IGLAT TMVT+G M+GR LG + GKRAE++GGVVLI VG Sbjct: 119 ALAVGVGLAFVDVNIFLAAGAIGLATMTMVTLGTMLGRALGAVTGKRAEMVGGVVLILVG 178 Query: 181 AAILYEHLSRA 191 A ILYEHLS A Sbjct: 179 ATILYEHLSAA 189 >yebN [S] COG1971 Predicted membrane protein Eco Escherichia coli K12 Length = 206 Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 109/190 (57%), Positives = 140/190 (73%), Gaps = 4/190 (2%) Query: 1 MNFPALVLLALAMSTDAFAAAIGKGAAMQKPRFLQALRIGLLFGVIEAITPLIGWFAGSV 60 MN A VLLA MS DAFAA+IGKGA + KP+F +ALR GL+FG +E +TPLIGW G + Sbjct: 19 MNITATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGMGML 78 Query: 61 ATKWVSQWDHWIAFTLLLVLGVRMIREGMSD-DDEDEDASAAPQKQSVVMLALTAVATSI 119 A+++V +W+HWIAF LL+ LG RMI EG DDEDE+ ++ +L TA+ATS+ Sbjct: 79 ASRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPR---RRHGFWLLVTTAIATSL 135 Query: 120 DAMAVGVGLAFIDVNILEAALLIGLATTTMVTIGVMVGRVLGHLIGKRAEIIGGVVLIGV 179 DAMAVGVGLAF+ VNI+ AL IG AT M T+G+MVGR +G +IGK+AEI+GG+VLIG+ Sbjct: 136 DAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGI 195 Query: 180 GAAILYEHLS 189 G IL+ H Sbjct: 196 GVQILWTHFH 205 >STM1834 [S] COG1971 Predicted membrane protein Sty Salmonella typhimurium LT2 Length = 206 Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 110/189 (58%), Positives = 141/189 (74%), Gaps = 4/189 (2%) Query: 1 MNFPALVLLALAMSTDAFAAAIGKGAAMQKPRFLQALRIGLLFGVIEAITPLIGWFAGSV 60 M+F A VLLA MS DAFAA+IGKGA + KP+F +ALR GL+FG +E +TPLIGW G + Sbjct: 19 MHFTATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGLGIL 78 Query: 61 ATKWVSQWDHWIAFTLLLVLGVRMIREGM-SDDDEDEDASAAPQKQSVVMLALTAVATSI 119 A+K+V +W+HWIAF LL+ LG RMI EG+ DEDE ++ S +L TA+ATS+ Sbjct: 79 ASKFVLEWNHWIAFVLLIFLGGRMIIEGIRGGSDEDE---TPLRRHSFWLLVTTAIATSL 135 Query: 120 DAMAVGVGLAFIDVNILEAALLIGLATTTMVTIGVMVGRVLGHLIGKRAEIIGGVVLIGV 179 DAMAVGVGLAF+ VNI+ AL IG AT M T+G+M+GR +G ++GKRAEI+GGVVLIG+ Sbjct: 136 DAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMIGRFIGPMLGKRAEILGGVVLIGI 195 Query: 180 GAAILYEHL 188 G IL+ H Sbjct: 196 GVQILWTHF 204 >ECs2531 [S] COG1971 Predicted membrane protein Ecs Escherichia coli O157:H7 Length = 206 Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 109/190 (57%), Positives = 140/190 (73%), Gaps = 4/190 (2%) Query: 1 MNFPALVLLALAMSTDAFAAAIGKGAAMQKPRFLQALRIGLLFGVIEAITPLIGWFAGSV 60 MN A VLLA MS DAFAA+IGKGA + KP+F +ALR GL+FG +E +TPLIGW G + Sbjct: 19 MNITATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGMGML 78 Query: 61 ATKWVSQWDHWIAFTLLLVLGVRMIREGMSD-DDEDEDASAAPQKQSVVMLALTAVATSI 119 A+++V +W+HWIAF LL+ LG RMI EG DDEDE+ ++ +L TA+ATS+ Sbjct: 79 ASRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPR---RRHGFWLLVTTAIATSL 135 Query: 120 DAMAVGVGLAFIDVNILEAALLIGLATTTMVTIGVMVGRVLGHLIGKRAEIIGGVVLIGV 179 DAMAVGVGLAF+ VNI+ AL IG AT M T+G+MVGR +G +IGK+AEI+GG+VLIG+ Sbjct: 136 DAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGI 195 Query: 180 GAAILYEHLS 189 G IL+ H Sbjct: 196 GVQILWTHFH 205 >Z2864 [S] COG1971 Predicted membrane protein EcZ Escherichia coli O157:H7 EDL933 Length = 206 Score = 209 bits (532), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 109/190 (57%), Positives = 139/190 (73%), Gaps = 4/190 (2%) Query: 1 MNFPALVLLALAMSTDAFAAAIGKGAAMQKPRFLQALRIGLLFGVIEAITPLIGWFAGSV 60 MN A VLLA MS DAFAA+IGKGA + KP+F +ALR GL+FG +E +TPLIGW G + Sbjct: 19 MNITATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGMGML 78 Query: 61 ATKWVSQWDHWIAFTLLLVLGVRMIREGMSD-DDEDEDASAAPQKQSVVMLALTAVATSI 119 A+++V +W+HWIAF LL+ LG RMI EG DDEDE+ ++ +L TA+ATS+ Sbjct: 79 ASRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPR---RRHGFWLLVTTAIATSL 135 Query: 120 DAMAVGVGLAFIDVNILEAALLIGLATTTMVTIGVMVGRVLGHLIGKRAEIIGGVVLIGV 179 DAMAVGVGLAF+ VNI+ AL IG AT M T+G+MVGR +G +IGK+AEI GG+VLIG+ Sbjct: 136 DAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEIXGGLVLIGI 195 Query: 180 GAAILYEHLS 189 G IL+ H Sbjct: 196 GVQILWTHFH 205 >YPO1754 [S] COG1971 Predicted membrane protein Ype Yersinia pestis Length = 189 Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 110/188 (58%), Positives = 143/188 (76%), Gaps = 3/188 (1%) Query: 1 MNFPALVLLALAMSTDAFAAAIGKGAAMQKPRFLQALRIGLLFGVIEAITPLIGWFAGSV 60 MN A ++LA AMS DAFAA+IGKGA + KPRF +ALR GL+FGVIEAITPLIGW G Sbjct: 1 MNLSATIILAFAMSMDAFAASIGKGATLYKPRFREALRTGLIFGVIEAITPLIGWCIGLF 60 Query: 61 ATKWVSQWDHWIAFTLLLVLGVRMIREGMSDDDEDEDASAAPQKQSVVMLALTAVATSID 120 A++++ +WDHWIAF+LL +LG RMI EGM + + + S +L TA+ATS+D Sbjct: 61 ASQYIMEWDHWIAFSLLFILGCRMIFEGMKQRVAETEKM---RSHSFWVLVTTAIATSLD 117 Query: 121 AMAVGVGLAFIDVNILEAALLIGLATTTMVTIGVMVGRVLGHLIGKRAEIIGGVVLIGVG 180 AMA+GVGLAF+ V+I+ A+ IGLAT M T+G+++GR +G L+GKRAEIIGG+VLIG+G Sbjct: 118 AMAIGVGLAFLQVDIVHTAMAIGLATMIMATLGMLIGRYIGPLLGKRAEIIGGIVLIGIG 177 Query: 181 AAILYEHL 188 ILYEH+ Sbjct: 178 FNILYEHM 185 >NMB0215 [S] COG1971 Predicted membrane protein Nme Neisseria meningitidis MC58 Length = 188 Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 99/189 (52%), Positives = 131/189 (69%), Gaps = 6/189 (3%) Query: 1 MNFPALVLLALAMSTDAFAAAIGKGAAMQ-KPRFLQALRIGLLFGVIEAITPLIGWFAGS 59 M F AL+L+AL MS DAFA A+ KGAA++ PR + A L+FG +EA+TPL GW G Sbjct: 1 MGFYALLLIALGMSMDAFAVALAKGAAVRMPPRKIAA--TALVFGTVEALTPLAGWVGGF 58 Query: 60 VATKWVSQWDHWIAFTLLLVLGVRMIREGMSDDDEDEDASAAPQKQSVVMLALTAVATSI 119 A ++S+WDHW+AF LL LG++M+REG+S + ED S +++S+ M LTA TSI Sbjct: 59 YAKPFISEWDHWVAFVLLGGLGLKMMREGLSGEAEDVRES---KRESLWMTVLTAFGTSI 115 Query: 120 DAMAVGVGLAFIDVNILEAALLIGLATTTMVTIGVMVGRVLGHLIGKRAEIIGGVVLIGV 179 D+M VGVGLAF++VNI AA +IG+ATT MV +G+ GR LG L G+ AE GG+VLI + Sbjct: 116 DSMIVGVGLAFMEVNIAFAAAIIGMATTVMVAVGLTAGRALGVLFGRCAEFAGGLVLIAI 175 Query: 180 GAAILYEHL 188 G L HL Sbjct: 176 GTWTLLSHL 184 >NMA0052 [S] COG1971 Predicted membrane protein NmA Neisseria meningitidis Z2491 Length = 188 Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 101/193 (52%), Positives = 130/193 (67%), Gaps = 6/193 (3%) Query: 1 MNFPALVLLALAMSTDAFAAAIGKGAAMQ-KPRFLQALRIGLLFGVIEAITPLIGWFAGS 59 M F AL+L+AL MS DAFA A+ KGAA++ PR + A L+FG +EA+TPL GW G Sbjct: 1 MGFYALLLIALGMSMDAFAVALAKGAAVRMPPRKIAA--TALVFGSVEALTPLAGWVGGF 58 Query: 60 VATKWVSQWDHWIAFTLLLVLGVRMIREGMSDDDEDEDASAAPQKQSVVMLALTAVATSI 119 A ++S+WDHW AF LL LG++M+REG+S ED S +++S+ M LTA TSI Sbjct: 59 YAKPFISEWDHWAAFVLLGGLGLKMMREGLSGKAEDVRES---KRESLWMTVLTAFGTSI 115 Query: 120 DAMAVGVGLAFIDVNILEAALLIGLATTTMVTIGVMVGRVLGHLIGKRAEIIGGVVLIGV 179 D+M VGVGLAF++VNI AA +IG+ATT MV +G+ G LG L GKRAE GG+VLI + Sbjct: 116 DSMIVGVGLAFMEVNIAFAAAIIGMATTVMVAVGLAAGGALGGLFGKRAEFAGGLVLIAI 175 Query: 180 GAAILYEHLSRAG 192 G L HL G Sbjct: 176 GTWTLLSHLGLIG 188 >XF2257 [S] COG1971 Predicted membrane protein Xfa Xylella fastidiosa 9a5c Length = 230 Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/189 (52%), Positives = 135/189 (71%), Gaps = 2/189 (1%) Query: 6 LVLLALAMSTDAFAAAIGKGAAMQKPRFLQALRIGLLFGVIEAITPLIGWFAGSVATKWV 65 ++L+ +AMSTDAFAAAIGKGAA+ KPR AL + ++FGVIE TP+ GW G +A+ ++ Sbjct: 42 ILLIGIAMSTDAFAAAIGKGAAIGKPRLRDALYVAVIFGVIETATPIAGWLLGQIASHYI 101 Query: 66 SQWDHWIAFTLLLVLGVRMIREGMSDDDE--DEDASAAPQKQSVVMLALTAVATSIDAMA 123 + +DHWIAF LL LG+ MI G+ ++ ++A + + LA TA+ATSIDA A Sbjct: 102 ATFDHWIAFGLLSGLGIHMIVNGLKNNGNTCKDNADTHNRNSRWLPLAATALATSIDAAA 161 Query: 124 VGVGLAFIDVNILEAALLIGLATTTMVTIGVMVGRVLGHLIGKRAEIIGGVVLIGVGAAI 183 +G+ LAF+D++I A +IGL T TMV GVM+GRVLG +G RAEI+GG++LI VG+ I Sbjct: 162 IGISLAFLDIHISIVAAVIGLCTFTMVIFGVMLGRVLGTFVGNRAEIVGGIILIIVGSTI 221 Query: 184 LYEHLSRAG 192 LYEHLS G Sbjct: 222 LYEHLSNNG 230 >Cj0167c Non COG Length = 187 Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 78/188 (41%), Positives = 122/188 (64%), Gaps = 4/188 (2%) Query: 1 MNFPALVLLALAMSTDAFAAAIGKGAAMQKPRFLQALRIGLLFGVIEAITPLIGWFAGSV 60 M+F +L+ L+ A+ DAFA ++ KG +++K L +G+ FG +A+ P IG+F G Sbjct: 1 MDFYSLIFLSCALGMDAFAVSLCKGFSVKKLHLKHYLIVGIYFGGFQALMPTIGYFIGIT 60 Query: 61 ATKWVSQWDHWIAFTLLLVLGVRMIREGMSDDDEDEDASAAPQKQSVVMLALTAVATSID 120 +++ DHWIAF LL ++G++MI+E + +++ D +A+ K MLAL A+ATSID Sbjct: 61 FASFIASIDHWIAFILLSLIGLKMIKESLENENCDSNANQFGFKT---MLAL-AIATSID 116 Query: 121 AMAVGVGLAFIDVNILEAALLIGLATTTMVTIGVMVGRVLGHLIGKRAEIIGGVVLIGVG 180 A+AVGV AF++VN+L A LIG+ T + I + +G G + +AE++GG+VLI +G Sbjct: 117 ALAVGVSFAFLNVNLLLAIFLIGIITFILCIIALKIGNKFGIYLKNKAELLGGLVLIILG 176 Query: 181 AAILYEHL 188 IL EHL Sbjct: 177 VKILIEHL 184