BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0035.p (260 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3702 [T] COG3706 Response regulator containing a CheY-like rec... 133 4e-31 RSp0400_2 [T] COG2199 FOG Rso Ralstonia solanacearum 133 5e-31 slr0829_3 [T] COG2199 FOG Syn Synechocystis 131 1e-30 RSp0398_2 [T] COG2199 FOG Rso Ralstonia solanacearum 130 3e-30 slr1657 [T] COG2199 FOG Syn Synechocystis 127 3e-29 sll1673_3 [T] COG2199 FOG Syn Synechocystis 126 5e-29 sll0821_7 [T] COG2199 FOG Syn Synechocystis 125 7e-29 RSp1524_2 [T] COG2199 FOG Rso Ralstonia solanacearum 125 8e-29 slr1047_3 [T] COG2199 FOG Syn Synechocystis 125 1e-28 VC2370_2 [T] COG2199 FOG Vch Vibrio cholerae 123 5e-28 >PA3702 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Pae Pseudomonas aeruginosa Length = 347 Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 71/196 (36%), Positives = 119/196 (60%), Gaps = 8/196 (4%) Query: 64 VEERDDARVHLEEMEKTLARVGL-------EDALTGLANRRQFERGLLEEFNRAARTSLS 116 +++RD+A L E ++ L L D LTGL+NRR F+ L E+ R+ R Sbjct: 143 LQQRDEAYRALRESQQQLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQ 202 Query: 117 LAVIMIDIDLFDEYNESYGRMAGDKVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGS 176 L+++MID+D F YN+++G +AGD+ LR+V AIR+ R DL +R+G +E A++LPG+ Sbjct: 203 LSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGT 262 Query: 177 RLEGALIVAERIRKSIELLDIPHSAS-PTGRVTISIGISSVAPQRQVDEPETVLREAEES 235 GA ++AE++R+++E L I H P +T+SIG+S++ P ++ A+++ Sbjct: 263 SPGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVSTLVPGGGGQTFRVLIEMADQA 322 Query: 236 LALAKSAGRDCIRTVE 251 L AK+ GR+ + +E Sbjct: 323 LYQAKNNGRNQVGLME 338 >RSp0400_2 [T] COG2199 FOG Rso Ralstonia solanacearum Length = 206 Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 106/177 (59%), Gaps = 6/177 (3%) Query: 75 EEMEKTLA------RVGLEDALTGLANRRQFERGLLEEFNRAARTSLSLAVIMIDIDLFD 128 +++EK LA + + DALTGL NRR + L +E+ RA R ++V+MID+D F Sbjct: 2 KQLEKRLAAGRRHAELAITDALTGLPNRRALDAFLDKEWKRALRERWPVSVLMIDVDAFK 61 Query: 129 EYNESYGRMAGDKVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAERI 188 YN+ YG + GD L+ V I+ R DL +R+G +E ++LP + LEGA+ VAE I Sbjct: 62 PYNDHYGHLGGDTALKAVARCIQAHASRSGDLAARYGGEEFCIVLPHTDLEGAIAVAEHI 121 Query: 189 RKSIELLDIPHSASPTGRVTISIGISSVAPQRQVDEPETVLREAEESLALAKSAGRD 245 R+++ L IPH+ P G +++SIG ++ P D ET+ + A+ L AK+ GR+ Sbjct: 122 RQAVLALHIPHAQGPAGILSVSIGAATDTPALSGDRAETLTQAADTQLYRAKTQGRN 178 >slr0829_3 [T] COG2199 FOG Syn Synechocystis Length = 188 Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 72/173 (41%), Positives = 110/173 (63%), Gaps = 2/173 (1%) Query: 74 LEEMEKTLARVGLEDALTGLANRRQFERGLLEEFNRAARTSLSLAVIMIDIDLFDEYNES 133 LE K L+++ D LT +ANRR F + +E+ R +R + +++IM DID F YN+ Sbjct: 1 LERFNKKLSQLIDIDGLTKIANRRCFNVRIKQEWRRLSRAQVPISLIMFDIDCFKNYNDR 60 Query: 134 YGRMAGDKVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAERIRKSIE 193 YG GD L RV A R RP DL++RFG +E AVLLP + +GA++VAE+I ++I Sbjct: 61 YGHPEGDLCLIRVAQAARKAASRPADLVARFGGEEFAVLLPETDTKGAIMVAEKIIQAIS 120 Query: 194 LLDIPHSASP-TGRVTISIGISSVAPQRQVDEPETVLREAEESLALAKSAGRD 245 L I H ASP +G++TIS+GI + P +++ T++++A+ +L AK GR+ Sbjct: 121 QLAIAHEASPISGQITISLGIGTQFPSKELIS-RTLIKQADMALYEAKRRGRN 172 >RSp0398_2 [T] COG2199 FOG Rso Ralstonia solanacearum Length = 177 Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 74/172 (43%), Positives = 106/172 (61%), Gaps = 3/172 (1%) Query: 76 EMEKTLARVGLEDALTGLANRRQFERGLLEEFNRAARTSLSLAVIMIDIDLFDEYNESYG 135 E ++ A + DALTGLANRR + L E+ RAAR L+V+MID+D F YN+ YG Sbjct: 3 EEQRRHAELAATDALTGLANRRALDERLDAEWRRAARERQPLSVLMIDVDHFKAYNDHYG 62 Query: 136 RMAGDKVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAERIRKSIELL 195 GD L+ V I+ RP DL +R+G +E V+LPGS L+ A +VAE IR++I +L Sbjct: 63 HPDGDAALQAVARCIQANLRRPGDLAARYGGEEFCVVLPGSDLDSANVVAETIRRAILVL 122 Query: 196 DIPHSASPTGRVTISIGISSVAPQRQVDEPE--TVLREAEESLALAKSAGRD 245 +IPH+ S + +T+SIG +S P EP T+ + A+ L AK++GR+ Sbjct: 123 NIPHARSASTALTVSIGAASGTPA-SSGEPRAATLTKAADAQLYRAKTSGRN 173 >slr1657 [T] COG2199 FOG Syn Synechocystis Length = 275 Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 64/162 (39%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query: 88 DALTGLANRRQFERGLLEEFNRAARTSLSLAVIMIDIDLFDEYNESYGRMAGDKVLRRVG 147 D+LT ++NRR F+ L +++ RA + ++A+I+ DID F ++N+ YG ++GD LRR+ Sbjct: 113 DSLTQVSNRRHFDLHLAQQWERAMDSQEAIALILCDIDHFKQFNDFYGHLSGDDCLRRIA 172 Query: 148 SAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAERIRKSIELLDIPHSASPTGR- 206 + T P DL +R+G +E V+LP E A +A+R++ S+ +L+IPH SPT Sbjct: 173 KTLSATLRNPFDLFARYGGEEFGVILPQVTSEAAQQIAKRMQASLTMLEIPHHHSPTSEF 232 Query: 207 VTISIGISSVAPQR-QVDEPETVLREAEESLALAKSAGRDCI 247 VT+S GI + PQ Q+ P ++ +A+E+L AK GR+CI Sbjct: 233 VTMSFGIGRLYPQPGQL--PLDLIAQADENLYKAKRQGRNCI 272 >sll1673_3 [T] COG2199 FOG Syn Synechocystis Length = 176 Score = 126 bits (317), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 64/159 (40%), Positives = 100/159 (62%), Gaps = 2/159 (1%) Query: 88 DALTGLANRRQFERGLLEEFNRAARTSLSLAVIMIDIDLFDEYNESYGRMAGDKVLRRVG 147 D LT +ANRR+F+ L +E+ R R L++I++DID F YN+ YG GD L++V Sbjct: 15 DGLTHIANRRRFDEYLAQEWQRHCREQKPLSLILVDIDYFKAYNDLYGHQKGDDCLQKVA 74 Query: 148 SAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAERIRKSIELLDIPHSASPTGR- 206 + + D R DL++R+G +E ++LP + + AL +AE + ++I L IPH S + Sbjct: 75 NTLVDIAKRITDLVARYGGEEFVIVLPNTNRQDALAMAENMLQAIAALAIPHEGSSVSKY 134 Query: 207 VTISIGISSVAPQRQVDEPETVLREAEESLALAKSAGRD 245 VTISIG+SS+ P + D E ++ EA+++L AKS GR+ Sbjct: 135 VTISIGVSSIIPMPE-DTIERIISEADQALYSAKSQGRN 172 >sll0821_7 [T] COG2199 FOG Syn Synechocystis Length = 182 Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 61/158 (38%), Positives = 100/158 (63%), Gaps = 1/158 (0%) Query: 88 DALTGLANRRQFERGLLEEFNRAARTSLSLAVIMIDIDLFDEYNESYGRMAGDKVLRRVG 147 DALT + NR F+ L E+ R R LA+++ D+D F +N++YG AGD+ L+++ Sbjct: 9 DALTQVGNRYLFDSTLEREWQRLQRIREPLALLLCDVDFFKGFNDNYGHPAGDRCLKKIA 68 Query: 148 SAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAERIRKSIELLDIPHSASPTGRV 207 A+ RP DL++R+G +E A++L + LEGA+ V E ++ + L IPH+ S TG V Sbjct: 69 DAMAKVAKRPTDLVARYGGEEFAIILSETSLEGAINVTEALQVEVANLAIPHTVSGTGHV 128 Query: 208 TISIGISSVAPQRQVDEPETVLREAEESLALAKSAGRD 245 T+SIGI+ P+R ++ P +++ A+ +L AK+ GR+ Sbjct: 129 TLSIGIAVYTPERHIN-PNALVKAADLALYEAKAKGRN 165 >RSp1524_2 [T] COG2199 FOG Rso Ralstonia solanacearum Length = 190 Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 71/173 (41%), Positives = 97/173 (56%), Gaps = 1/173 (0%) Query: 76 EMEKTLARVGLEDALTGLANRRQFERGLLEEFNRAARTSLSLAVIMIDIDLFDEYNESYG 135 E E+ LA + D LTGL RR + L E+ RA R LAV+MID+D F YN+ YG Sbjct: 6 EAEQKLAWLANTDGLTGLGTRRALDAALEAEWQRANRQGRPLAVLMIDVDEFKHYNDRYG 65 Query: 136 RMAGDKVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAERIRKSIELL 195 AGD VLR V + D+ RP D R+G +E VLLP + L GA VAE IR ++ Sbjct: 66 HAAGDTVLRTVARCVNDSIRRPGDFAGRYGGEEFCVLLPDTDLAGAQRVAEIIRATVLAA 125 Query: 196 DIPHSASPTGRVTISIGISSVAPQRQVD-EPETVLREAEESLALAKSAGRDCI 247 P++ S GR+T+SIG+++ + P +L A+ L AKS GR+ + Sbjct: 126 GEPNAGSAHGRLTVSIGVAAHDGRGDTGTTPARLLHHADLQLYEAKSGGRNAV 178 >slr1047_3 [T] COG2199 FOG Syn Synechocystis Length = 184 Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 100/173 (57%), Gaps = 2/173 (1%) Query: 74 LEEMEKTLARVGLEDALTGLANRRQFERGLLEEFNRAARTSLSLAVIMIDIDLFDEYNES 133 LE++ + L + + D LT + NRR F L +E+ + R +++I+ D+D F YN+ Sbjct: 1 LEQVNQRLKHLAIYDELTQIPNRRYFTSYLEQEWRQCLRQKSPISLILCDVDYFKNYNDL 60 Query: 134 YGRMAGDKVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAERIRKSIE 193 YG GDK L+ V I++ RP D+L+R+G +E V+LP + GA V +RI + Sbjct: 61 YGHQMGDKCLQSVAKVIQNALKRPSDVLARYGGEEFIVILPYTDQSGAYTVGQRIHHCLA 120 Query: 194 LLDIPHSASPTGR-VTISIGISSVAPQRQVDEPETVLREAEESLALAKSAGRD 245 I H+ SPT R +TIS+GI + P P +++ A+++L AK+AGR+ Sbjct: 121 EAQISHADSPTSRYLTISLGIGTTVPLLHY-HPSDLIKIADQALYAAKAAGRN 172 >VC2370_2 [T] COG2199 FOG Vch Vibrio cholerae Length = 188 Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 104/173 (60%), Gaps = 2/173 (1%) Query: 74 LEEMEKTLARVGLEDALTGLANRRQFERGLLEEFNRAARTSLSLAVIMIDIDLFDEYNES 133 LE + L R+ D+LT +ANRR+F+ L ++ R L++I+ D+D F +YN++ Sbjct: 8 LEAANQELERLSFLDSLTHVANRRRFDEQLHTLWHLHVREGKPLSIILCDVDYFKDYNDA 67 Query: 134 YGRMAGDKVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAERIRKSIE 193 YG + GD+ L+++ A R D ++R+G +E +LLP + GA++VAERI + + Sbjct: 68 YGHLMGDETLKQIAIAFTQVANRHSDCVARYGGEEFGILLPNTPQSGAILVAERIHEKVR 127 Query: 194 LLDIPHSASPTG-RVTISIGISSVAPQRQVDEPETVLREAEESLALAKSAGRD 245 L IPH S R+T+S+GI ++ P R D PE ++ A+ +L AK+ GR+ Sbjct: 128 GLAIPHDHSKVADRITVSLGIVTLIP-RPEDVPEQMVELADRALYQAKANGRN 179