BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0023.p         (184 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM2436 [KE] COG1167 Transcriptional regulators containing a DNA...   173   1e-43

>STM2436 [KE] COG1167 Transcriptional regulators containing a DNA-binding
           HTH domain and an aminotransferase domain (MocR family)
           and their eukaryotic orthologs Sty Salmonella
           typhimurium LT2
          Length = 430

 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/184 (49%), Positives = 122/184 (66%), Gaps = 1/184 (0%)

Query: 1   VLVIVDDHFSLVSTARYHSVIPAAAPRWALVRSFSKALGPDLRVAAVASDAATSQLLRTR 60
           V+VI+DDHF+L+S++ +  VI      WA++RS SK LGPDLR+A VASD+ATS  LR R
Sbjct: 247 VVVIIDDHFALLSSSPWQPVIAQTTQHWAVIRSVSKTLGPDLRLAIVASDSATSAKLRLR 306

Query: 61  LSPGGSWVSHFLQDSIESALGRPDTAWLMQQARADYAARRERLERALHKQGIACATGGDG 120
           L+ G  WVSH LQD + + L  P+    + Q R  YAAR+++L RAL + GIA +  GDG
Sbjct: 307 LNAGSQWVSHLLQDLVYACLTDPEYQHRLTQTRLFYAARQQKLARALQQYGIAISP-GDG 365

Query: 121 LNLWIALSGDDQAAALSMARLGWLLRHGEAFSVQQRVHGLRITLSALEADAAAKLAADLR 180
           +N W+ L    QA A ++A+ GWL+R GEAF V    HGLRITLS L       LAAD+ 
Sbjct: 366 VNAWLPLDTHSQATAFTLAKSGWLVREGEAFGVSAPSHGLRITLSTLNDSEINTLAADIH 425

Query: 181 RSLS 184
           ++L+
Sbjct: 426 QALN 429