BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0005.p (165 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM3977 [K] COG0250 Transcription antiterminator Sty Salmonella ... 105 4e-23 rfaH [K] COG0250 Transcription antiterminator Eco Escherichia co... 103 2e-22 ZrfaH [K] COG0250 Transcription antiterminator EcZ Escherichia c... 103 2e-22 ECs4770 [K] COG0250 Transcription antiterminator Ecs Escherichia... 103 2e-22 VC0990 [K] COG0250 Transcription antiterminator Vch Vibrio cholerae 98 6e-21 YPO3770 [K] COG0250 Transcription antiterminator Ype Yersinia pe... 92 3e-19 >STM3977 [K] COG0250 Transcription antiterminator Sty Salmonella typhimurium LT2 Length = 162 Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 87/162 (53%), Gaps = 3/162 (1%) Query: 3 WYLVHTKPRQEICAQQNLEQQGYECYLPLLHKEKVRRGALTLSSEALFPRYLFIRLGAGL 62 WYL++ K Q AQ++LE+Q C P++ EK+ RG T SE LFP YLF+ + Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVSCLTPMITLEKMVRGKRTSVSEPLFPNYLFVEFDPEV 63 Query: 63 TSKSWAPIRSTKGVSRLVTFGTEPAKISNDLVLALQAAQQSEAAPVERAFTPGQRVQLVE 122 + I +T+GVS V FG PA + + ++ L + E + PG V + E Sbjct: 64 IHTTT--INATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPEGVVDPETPY-PGDSVIITE 120 Query: 123 GALSGIEGIFLEADGERRVMVLIEMLSKPVSVAVAPGSLRKI 164 GA G++ IF E DGE R M+L+ +L+K V +V RKI Sbjct: 121 GAFEGLKAIFTEPDGETRSMLLLNLLNKEVKQSVKNTGFRKI 162 >rfaH [K] COG0250 Transcription antiterminator Eco Escherichia coli K12 Length = 162 Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 3/162 (1%) Query: 3 WYLVHTKPRQEICAQQNLEQQGYECYLPLLHKEKVRRGALTLSSEALFPRYLFIRLGAGL 62 WYL++ K Q AQ++LE+Q C P++ EK+ RG T SE LFP YLF+ + Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 Query: 63 TSKSWAPIRSTKGVSRLVTFGTEPAKISNDLVLALQAAQQSEAAPVERAFTPGQRVQLVE 122 + I +T+GVS V FG PA + + ++ L + + + PG +V + E Sbjct: 64 IHTTT--INATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY-PGDKVIITE 120 Query: 123 GALSGIEGIFLEADGERRVMVLIEMLSKPVSVAVAPGSLRKI 164 GA G + IF E DGE R M+L+ +++K + +V RK+ Sbjct: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 >ZrfaH [K] COG0250 Transcription antiterminator EcZ Escherichia coli O157:H7 EDL933 Length = 162 Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 3/162 (1%) Query: 3 WYLVHTKPRQEICAQQNLEQQGYECYLPLLHKEKVRRGALTLSSEALFPRYLFIRLGAGL 62 WYL++ K Q AQ++LE+Q C P++ EK+ RG T SE LFP YLF+ + Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 Query: 63 TSKSWAPIRSTKGVSRLVTFGTEPAKISNDLVLALQAAQQSEAAPVERAFTPGQRVQLVE 122 + I +T+GVS V FG PA + + ++ L + + + PG +V + E Sbjct: 64 IHTTT--INATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY-PGDKVIITE 120 Query: 123 GALSGIEGIFLEADGERRVMVLIEMLSKPVSVAVAPGSLRKI 164 GA G + IF E DGE R M+L+ +++K + +V RK+ Sbjct: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 >ECs4770 [K] COG0250 Transcription antiterminator Ecs Escherichia coli O157:H7 Length = 162 Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 3/162 (1%) Query: 3 WYLVHTKPRQEICAQQNLEQQGYECYLPLLHKEKVRRGALTLSSEALFPRYLFIRLGAGL 62 WYL++ K Q AQ++LE+Q C P++ EK+ RG T SE LFP YLF+ + Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 Query: 63 TSKSWAPIRSTKGVSRLVTFGTEPAKISNDLVLALQAAQQSEAAPVERAFTPGQRVQLVE 122 + I +T+GVS V FG PA + + ++ L + + + PG +V + E Sbjct: 64 IHTTT--INATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY-PGDKVIITE 120 Query: 123 GALSGIEGIFLEADGERRVMVLIEMLSKPVSVAVAPGSLRKI 164 GA G + IF E DGE R M+L+ +++K + +V RK+ Sbjct: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 >VC0990 [K] COG0250 Transcription antiterminator Vch Vibrio cholerae Length = 165 Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 2/156 (1%) Query: 2 QWYLVHTKPRQEICAQQNLEQQGYECYLPLLHKEKVRRGALTLSSEALFPRYLFIRLGAG 61 +WYL++ K ++ A+ +LE Q EC+ P + EK+ RG + E LFP Y+F+R Sbjct: 3 RWYLLYCKRGEQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFPSYMFVRFDFE 62 Query: 62 LTSKSWAPIRSTKGVSRLVTFGTEPAKISNDLVLALQAAQQSEAAPVERAF-TPGQRVQL 120 S+ +RST+GV V G P ++ DL+ L+ + + GQ V++ Sbjct: 63 -NGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQLKQLDCEQLKHATKQLPEKGQTVRV 121 Query: 121 VEGALSGIEGIFLEADGERRVMVLIEMLSKPVSVAV 156 G +GIE I+LE DG+ R ++L++M+S+ V +++ Sbjct: 122 ARGQFAGIEAIYLEPDGDTRSIMLVKMISQQVPMSI 157 >YPO3770 [K] COG0250 Transcription antiterminator Ype Yersinia pestis Length = 162 Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 5/151 (3%) Query: 3 WYLVHTKPRQEICAQQNLEQQGYECYLPLLHKEKVRRGALTLSSEALFPRYLFIRLGAGL 62 WYL++ K Q + A+++LE+Q C+ P++ EK+ RG EALFP YLF Sbjct: 4 WYLLYCKRGQILRAKEHLERQTVNCWTPIVAIEKIVRGKRIEVIEALFPNYLFAEFDPEN 63 Query: 63 TSKSWAPIRSTKGVSRLVTFGTEPAKISNDLVLALQA-AQQSEAAPVERAFTPGQRVQLV 121 + + +T+G S V FGT+PA I ++ +QA A AP PG V+++ Sbjct: 64 IHTT--TVSATRGGSHFVRFGTQPAVIPATVIADMQAHAVDKIIAP--EVPKPGDIVKII 119 Query: 122 EGALSGIEGIFLEADGERRVMVLIEMLSKPV 152 +G +G++ I+ E DGE R M+L+ ML+ + Sbjct: 120 DGVFAGLQAIYTEPDGEARSMLLLNMLNSQI 150