BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0002.p (162 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ECs1679 [L] COG0389 Nucleotidyltransferase/DNA polymerase involv... 162 4e-40 ZumuC [L] COG0389 Nucleotidyltransferase/DNA polymerase involved... 162 4e-40 umuC [L] COG0389 Nucleotidyltransferase/DNA polymerase involved ... 161 6e-40 PSLT054 [L] COG0389 Nucleotidyltransferase/DNA polymerase involv... 154 1e-37 STM1997 [L] COG0389 Nucleotidyltransferase/DNA polymerase involv... 151 5e-37 mlr1877 [L] COG0389 Nucleotidyltransferase/DNA polymerase involv... 90 2e-18 slr0790 [L] COG0389 Nucleotidyltransferase/DNA polymerase involv... 75 5e-14 SSO2448 [L] COG0389 Nucleotidyltransferase/DNA polymerase involv... 74 1e-13 BS_yqjW [L] COG0389 Nucleotidyltransferase/DNA polymerase involv... 72 7e-13 Cgl2094 [L] COG0389 Nucleotidyltransferase/DNA polymerase involv... 67 2e-11 >ECs1679 [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair Ecs Escherichia coli O157:H7 Length = 422 Score = 162 bits (409), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 79/145 (54%), Positives = 99/145 (68%), Gaps = 1/145 (0%) Query: 14 FALVDVNNFYVSCERVFDPKLRARPVVVLSNNDGCAVAHSNEAKALGIKMAAPWFMMQEL 73 FAL DVN FY SCE VF P+L +PVVVLSNNDGC +A + EAKALG+KM PWF ++L Sbjct: 2 FALCDVNAFYASCETVFRPELWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 Query: 74 ARQHGIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESFLALDGLAGLWPSMSDMG 133 R+ G+V SSNY LYADMSNRV L + SPR+E+YSIDE+F L G+ ++D G Sbjct: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDFG 120 Query: 134 QAIRHQVLTWVGVPVCVGMGATKKV 158 + IR VL + V VG+ TK + Sbjct: 121 REIRATVLQRTHLTVGVGIAQTKTL 145 >ZumuC [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair EcZ Escherichia coli O157:H7 EDL933 Length = 422 Score = 162 bits (409), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 79/145 (54%), Positives = 99/145 (68%), Gaps = 1/145 (0%) Query: 14 FALVDVNNFYVSCERVFDPKLRARPVVVLSNNDGCAVAHSNEAKALGIKMAAPWFMMQEL 73 FAL DVN FY SCE VF P+L +PVVVLSNNDGC +A + EAKALG+KM PWF ++L Sbjct: 2 FALCDVNAFYASCETVFRPELWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 Query: 74 ARQHGIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESFLALDGLAGLWPSMSDMG 133 R+ G+V SSNY LYADMSNRV L + SPR+E+YSIDE+F L G+ ++D G Sbjct: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDFG 120 Query: 134 QAIRHQVLTWVGVPVCVGMGATKKV 158 + IR VL + V VG+ TK + Sbjct: 121 REIRATVLQRTHLTVGVGIAQTKTL 145 >umuC [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair Eco Escherichia coli K12 Length = 422 Score = 161 bits (407), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 79/145 (54%), Positives = 98/145 (67%), Gaps = 1/145 (0%) Query: 14 FALVDVNNFYVSCERVFDPKLRARPVVVLSNNDGCAVAHSNEAKALGIKMAAPWFMMQEL 73 FAL DVN FY SCE VF P L +PVVVLSNNDGC +A + EAKALG+KM PWF ++L Sbjct: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 Query: 74 ARQHGIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESFLALDGLAGLWPSMSDMG 133 R+ G+V SSNY LYADMSNRV L + SPR+E+YSIDE+F L G+ ++D G Sbjct: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDFG 120 Query: 134 QAIRHQVLTWVGVPVCVGMGATKKV 158 + IR VL + V VG+ TK + Sbjct: 121 REIRATVLQRTHLTVGVGIAQTKTL 145 >PSLT054 [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair Sty Salmonella typhimurium LT2 Length = 424 Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 76/145 (52%), Positives = 94/145 (64%), Gaps = 1/145 (0%) Query: 14 FALVDVNNFYVSCERVFDPKLRARPVVVLSNNDGCAVAHSNEAKALGIKMAAPWFMMQEL 73 FAL DVN+FY SCE+VF P LR R VVVLSNNDGC +A S EAK LGIKM PWF ++ Sbjct: 2 FALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIARSAEAKKLGIKMGVPWFQLRSA 61 Query: 74 ARQHGIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESFLALDGLAGLWPSMSDMG 133 ++A SSNY LYA MSNRV L + +PR+E YSIDE FL + G+ D G Sbjct: 62 KFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSC-IDFEDFG 120 Query: 134 QAIRHQVLTWVGVPVCVGMGATKKV 158 + +R V + G+ + VGMG TK + Sbjct: 121 RQLREHVRSGTGLTIGVGMGPTKTL 145 >STM1997 [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair Sty Salmonella typhimurium LT2 Length = 422 Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 77/145 (53%), Positives = 94/145 (64%), Gaps = 1/145 (0%) Query: 14 FALVDVNNFYVSCERVFDPKLRARPVVVLSNNDGCAVAHSNEAKALGIKMAAPWFMMQEL 73 FAL DVN+FY SCE VF P L RPVVVLSNNDGC +A S EAK LGI P+F +E Sbjct: 2 FALCDVNSFYASCETVFRPDLCGRPVVVLSNNDGCVIACSAEAKQLGIAPGEPYFKQKER 61 Query: 74 ARQHGIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESFLALDGLAGLWPSMSDMG 133 R+ G+V SSNY LYADMSNRV L + PR+E+YSIDE+F L G+ ++D G Sbjct: 62 FRRSGVVCFSSNYELYADMSNRVMTTLEEMVPRVEIYSIDEAFCDLTGVRNC-RDLTDFG 120 Query: 134 QAIRHQVLTWVGVPVCVGMGATKKV 158 + IR VL + V VG+ TK + Sbjct: 121 REIRATVLKRTHLTVGVGIAQTKTL 145 >mlr1877 [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair Mlo Mesorhizobium loti Length = 415 Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 79/141 (56%), Gaps = 5/141 (3%) Query: 18 DVNNFYVSCERVFDPKLRARPVVVLSNNDGCAVAHSNEAKALGIKMAAPWFMMQELARQH 77 D++ FY S E++ DP LR +P+ V G +A S EA+A G++ P +EL Q Sbjct: 11 DLDAFYASVEQLLDPSLRGKPIAV---GGGVVLAASYEARAFGVRGGMPGRKARELCPQ- 66 Query: 78 GIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESFLALDGLAGLWPSMSDMGQAIR 137 ++ + N++ Y + + +VL ++P +E SIDE+F + G L+ D+ AIR Sbjct: 67 -LIFVGGNFSHYQRLGDAAIKVLDDFTPVVERISIDEAFADVAGCTHLFGQPRDIATAIR 125 Query: 138 HQVLTWVGVPVCVGMGATKKV 158 H+V +G+P+ +G+ TK + Sbjct: 126 HRVRAELGLPISIGVARTKHL 146 >slr0790 [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair Syn Synechocystis Length = 116 Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 32/63 (50%), Positives = 46/63 (73%) Query: 57 KALGIKMAAPWFMMQELARQHGIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESF 116 KALG+KM P+F + +L ++H I SSNY LY D+S+R+ L+ +SP +E+YSIDE+F Sbjct: 33 KALGVKMGVPFFKIPDLVKRHNIQVFSSNYCLYGDLSHRIMTSLQLFSPVVEIYSIDEAF 92 Query: 117 LAL 119 L L Sbjct: 93 LEL 95 >SSO2448 [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair Sso Sulfolobus solfataricus Length = 352 Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 7/146 (4%) Query: 16 LVDVNNFYVSCERVFDPKLRARPVVVL----SNNDGCAVAHSN-EAKALGIKMAAPWFMM 70 VD + FY E V +P L+ +PVVV D AVA +N EA+ G+K P Sbjct: 5 FVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEA 64 Query: 71 QELARQHGIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESFLALDGLAGLWPSMS 130 +++ V L +Y +S+R+ +LR+YS ++E+ SIDE++L + + Sbjct: 65 KKIL--PNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAY 122 Query: 131 DMGQAIRHQVLTWVGVPVCVGMGATK 156 ++G I++++L + V VG+ K Sbjct: 123 NLGLEIKNKILEKEKITVTVGISKNK 148 >BS_yqjW [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair Bsu Bacillus subtilis Length = 412 Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 5/144 (3%) Query: 16 LVDVNNFYVSCERVFDPKLRARPVVVLSNND---GCAVAHSNEAKALGIKMAAPWFMMQE 72 LVD+ +FY S E+ +P L+ RPV+V + + G +A AK G+ A+ + QE Sbjct: 9 LVDMQSFYASVEKAENPHLKNRPVIVSGDPEKRGGVVLAACPLAKQKGVVNASRLWEAQE 68 Query: 73 LARQHGIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESFLALDGLAGLWPSMSDM 132 + V L Y D+S ++T +L +Y+ +E YSIDE F+ + G L+ + ++ Sbjct: 69 KCPE--AVVLRPRMQRYIDVSLQITAILEEYTDLVEPYSIDEQFMDITGSQKLFGTPMEI 126 Query: 133 GQAIRHQVLTWVGVPVCVGMGATK 156 ++I+ +++ +GV VG+G K Sbjct: 127 AKSIQGRIMREIGVYARVGIGPNK 150 >Cgl2094 [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair Cgl Corynebacterium glutamicum Length = 467 Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 78/145 (53%), Gaps = 5/145 (3%) Query: 17 VDVNNFYVSCERVFDPKLRARPVVVLSNNDGCAVAH-SNEAKALGIKMAAPWFMMQELAR 75 +D++ F+ SCE++ P LR RPV+V + VA S EA+ G + A P M Q AR Sbjct: 8 IDMDAFFASCEQLTRPTLRGRPVLVGGVSGRGVVAGASYEARKFGARSAMP--MHQAKAR 65 Query: 76 -QHGIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESFLALDGLAGLWP-SMSDMG 133 G V ++ + +Y+ S RV Q++ + + +E SIDE F+ + L G P + Sbjct: 66 VGFGAVVVTPRHIVYSAASRRVFQIVEKRAGIVERLSIDEGFMEPEALVGATPEEVKQWA 125 Query: 134 QAIRHQVLTWVGVPVCVGMGATKKV 158 + +R ++ G+P VG G+ K++ Sbjct: 126 EELRAEIKEVTGLPSSVGAGSGKQI 150