BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0001.p (127 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value umuD [KT] COG1974 SOS-response transcriptional repressors (RecA-... 92 2e-19 ZumuD [KT] COG1974 SOS-response transcriptional repressors (RecA... 92 2e-19 ECs1678 [KT] COG1974 SOS-response transcriptional repressors (Re... 92 2e-19 STM1998 [KT] COG1974 SOS-response transcriptional repressors (Re... 89 3e-18 PSLT055 [KT] COG1974 SOS-response transcriptional repressors (Re... 88 4e-18 TM1082 [KT] COG1974 SOS-response transcriptional repressors (Rec... 64 1e-10 CC1902 Non COG 60 1e-09 RSc1304 [KT] COG1974 SOS-response transcriptional repressors (Re... 60 1e-09 STM2230 [KT] COG1974 SOS-response transcriptional repressors (Re... 59 3e-09 ML1003 [KT] COG1974 SOS-response transcriptional repressors (Rec... 57 7e-09 >umuD [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) Eco Escherichia coli K12 Length = 139 Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 1/118 (0%) Query: 9 LHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRSVSPQ 68 + GFPSPAADY +DLNQ L+ + T+ +G SM I +GD ++VD +++ Sbjct: 22 VQCGFPSPAADYVEQRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITAS 81 Query: 69 PGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGVARKM 126 G IV+A V+ EFT+K+L+L +L P N + PI + L+VFGVV+ V + M Sbjct: 82 HGDIVIAAVDGEFTVKKLQL-RPTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAM 138 >ZumuD [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) EcZ Escherichia coli O157:H7 EDL933 Length = 139 Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 1/118 (0%) Query: 9 LHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRSVSPQ 68 + GFPSPAADY +DLNQ L+ + T+ +G SM I +GD ++VD +++ Sbjct: 22 VQCGFPSPAADYVEQRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITAS 81 Query: 69 PGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGVARKM 126 G IV+A V+ EFT+K+L+L +L P N + PI + L+VFGVV+ V + M Sbjct: 82 HGDIVIAAVDGEFTVKKLQL-RPTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAM 138 >ECs1678 [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) Ecs Escherichia coli O157:H7 Length = 139 Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 1/118 (0%) Query: 9 LHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRSVSPQ 68 + GFPSPAADY +DLNQ L+ + T+ +G SM I +GD ++VD +++ Sbjct: 22 VQCGFPSPAADYVEQRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITAS 81 Query: 69 PGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGVARKM 126 G IV+A V+ EFT+K+L+L +L P N + PI + L+VFGVV+ V + M Sbjct: 82 HGDIVIAAVDGEFTVKKLQL-RPTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAM 138 >STM1998 [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) Sty Salmonella typhimurium LT2 Length = 139 Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 71/119 (59%), Gaps = 1/119 (0%) Query: 6 THKLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRSV 65 ++ + GFPSPAADY +DLN+ LV + T+ +G SM A I +GD +VVD S Sbjct: 19 SYLVPCGFPSPAADYIEQRIDLNELLVSHPSSTYFVKASGDSMIEAGISDGDLLVVDSSR 78 Query: 66 SPQPGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGVAR 124 + G IV+A + EFT+KRL+L +L P N +RPI G + L++FGVV + + Sbjct: 79 NADHGDIVIAAIEGEFTVKRLQL-RPTVQLIPMNGAYRPIPVGSEDTLDIFGVVTFIIK 136 >PSLT055 [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) Sty Salmonella typhimurium LT2 Length = 140 Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 53/120 (44%), Positives = 68/120 (56%), Gaps = 4/120 (3%) Query: 6 THKLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRSV 65 T + AGFPSPAADYT + LDLN Y + R A TF G SM + GD +VVD++ Sbjct: 20 TERCPAGFPSPAADYTEEELDLNAYCIRRPAATFFVRAIGDSMKEMGLHSGDLMVVDKAE 79 Query: 66 SPQPGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGVARK 125 P G IV+A + EFT+KRL+L L P NP + P + E L++FGVV K Sbjct: 80 KPMQGDIVIAETDGEFTVKRLQL-KPRIALLPINPAY-PTLY--PEELQIFGVVTAFIHK 135 >TM1082 [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) Tma Thermotoga maritima Length = 197 Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 8 KLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRSVSP 67 ++ AG A +Y D +++ + + FL V G SM HI +GD V+V R Sbjct: 80 EIRAGEKREAIEYLEDYIEIPESFLSSGYDHFLLKVKGESMIEEHICDGDLVLVRRQDWA 139 Query: 68 QPGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGVARKM 126 Q G IV A+V+ E T+K+ EL P N + + F E +++ G VVGV RK+ Sbjct: 140 QNGDIVAAMVDGEVTLKKFYQRGDTVELRPANREMSSM-FFRAEKVKILGKVVGVFRKL 197 >CC1902 Non COG Length = 245 Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 2/123 (1%) Query: 3 LHITHKLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVD 62 L I ++ AG P A + + L + + ++ ++ +V G SM A I++GD V++ Sbjct: 123 LPILGRIAAGTPIDAIQHERERLPVPEAMLG-AGEHYVLEVQGDSMIEAGILDGDYVIIK 181 Query: 63 RSVSPQPGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGV 122 + + G IVVA+V E T+KRLR G+ L NP + FG +V EV G +VG+ Sbjct: 182 KGDTATSGEIVVALVGEEATLKRLRKKGGSIALEAANPKYETRIFGPDQV-EVQGKLVGL 240 Query: 123 ARK 125 R+ Sbjct: 241 IRR 243 >RSc1304 [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) Rso Ralstonia solanacearum Length = 216 Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 64/129 (49%), Gaps = 10/129 (7%) Query: 1 LALHITHKLHAGFPSPAADYTADPLDLNQYLVDRVACT----FLFDVAGWSMSGAHIVEG 56 L L + ++ AG P AA++ QY VD + FL V G SM A I++G Sbjct: 89 LTLPLVGRVAAGSPILAAEHID-----RQYQVDPSLFSSRPDFLLKVRGMSMRDAGILDG 143 Query: 57 DKVVVDRSVSPQPGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFG-DGEVLEV 115 D + V R+ G IVVA + + T+KR + EL ENPDF PI D + ++ Sbjct: 144 DLLAVQRAAEAANGKIVVARLGDDVTVKRFQRKGRQVELIAENPDFEPIHVDLDRDEFQL 203 Query: 116 FGVVVGVAR 124 G+ VG+ R Sbjct: 204 EGLAVGLIR 212 >STM2230 [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) Sty Salmonella typhimurium LT2 Length = 167 Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 16/118 (13%) Query: 12 GFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRSVSPQPGH 71 GFPSPA+DY + L+Q L+ + A T+ F A S I++G +VVD S+S G Sbjct: 40 GFPSPASDYVETRISLDQQLISQPAATY-FMRASRSHFREGIIQGALLVVDASLSACDGS 98 Query: 72 IVVAIVNAEFTIKRLR---------LVNGAYELHPENPDFRPIRFGDGEVLEVFGVVV 120 +++ ++ EF IKR R L NG E PE+ D G +FGV+ Sbjct: 99 LLICAIDGEFRIKRYRTHPQPHLINLENGRKEALPEDGD------GYNSSHAIFGVIT 150 >ML1003 [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) Mle Mycobacterium leprae Length = 235 Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/122 (37%), Positives = 57/122 (46%), Gaps = 4/122 (3%) Query: 5 ITHKLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRS 64 I ++ AG P A D L + LV FL V G SM A I +GD VVV + Sbjct: 118 ILGRIAAGSPIFAEGTVEDIFPLPRELVGE-GTLFLLKVTGDSMVEAAICDGDWVVVRQQ 176 Query: 65 VSPQPGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGVAR 124 G IV A+++ E T+K + G L P NP F PI D VL G VV V R Sbjct: 177 KVADNGDIVAAMIDGEATVKTFKRAGGQVWLIPHNPAFDPIPGNDATVL---GKVVTVIR 233 Query: 125 KM 126 K+ Sbjct: 234 KI 235