BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0053.p (202 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0394 [J] COG1825 Ribosomal protein L25 (general stress protei... 259 2e-69 XF2643 [J] COG1825 Ribosomal protein L25 (general stress protein... 187 9e-48 NMA1094 [J] COG1825 Ribosomal protein L25 (general stress protei... 186 4e-47 NMB0876 [J] COG1825 Ribosomal protein L25 (general stress protei... 186 4e-47 PA4671 [J] COG1825 Ribosomal protein L25 (general stress protein... 155 5e-38 BMEI0481 [J] COG1825 Ribosomal protein L25 (general stress prote... 140 2e-33 mlr2692 [J] COG1825 Ribosomal protein L25 (general stress protei... 132 6e-31 AGc4048 [J] COG1825 Ribosomal protein L25 (general stress protei... 123 2e-28 SMc02692 [J] COG1825 Ribosomal protein L25 (general stress prote... 119 4e-27 CC0485 [J] COG1825 Ribosomal protein L25 (general stress protein... 107 1e-23 >RSc0394 [J] COG1825 Ribosomal protein L25 (general stress protein Ctc) Rso Ralstonia solanacearum Length = 206 Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 122/190 (64%), Positives = 153/190 (80%), Gaps = 3/190 (1%) Query: 1 MKVIAFPRKEQGTGASRRLRRAGQTPGIVYGGTAAPLNIAVDHNALYHALKKETFHSSIL 60 MKV+AF R QGTGASRRLR AG+TP I+YG A P I +DHNALYHALKKE FHSSIL Sbjct: 1 MKVVAFERSVQGTGASRRLRNAGKTPAIIYGAGAEPKLIELDHNALYHALKKEAFHSSIL 60 Query: 61 DLEIEGKVEQVLLRDFQVHAYKQLVLHVDFQRVDASQKLHTKVPLHFVNAEVSPAVKLHG 120 D+E+ GKVE+ LLRDFQ+H +KQLVLHVDFQRV A++K+H KVPLHF+N E +P VKL Sbjct: 61 DIEVAGKVEKALLRDFQLHPFKQLVLHVDFQRVSATEKIHVKVPLHFLNQETAPGVKLGH 120 Query: 121 GIISHVAAELDVTCLPKNLPEFIEVDLAKLDVGQSIHLADLKLPNGVTAVTQ---ENLTI 177 GI++H+ +++V+CLP +LPEFIEVDL L++GQ++H++DLKLP GVT VT EN + Sbjct: 121 GIVNHILNDVEVSCLPADLPEFIEVDLGNLEIGQTLHISDLKLPKGVTIVTHGGDENPAV 180 Query: 178 ATATVPAGQV 187 A +VPAG+V Sbjct: 181 ANISVPAGEV 190 >XF2643 [J] COG1825 Ribosomal protein L25 (general stress protein Ctc) Xfa Xylella fastidiosa 9a5c Length = 208 Score = 187 bits (476), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 96/189 (50%), Positives = 125/189 (66%), Gaps = 1/189 (0%) Query: 8 RKEQGTGASRRLRRAGQTPGIVYGGTAAPLNIAVDHNALYHALKKETFHSSILDLEIEGK 67 RK++G GASRRLR AG P I+YGG P++I ++H ++ A + E F+SSILDL ++G Sbjct: 11 RKDEGKGASRRLRHAGMIPAIIYGGEQRPVSIQLNHEQIWLAQQNEWFYSSILDLNVDGG 70 Query: 68 V-EQVLLRDFQVHAYKQLVLHVDFQRVDASQKLHTKVPLHFVNAEVSPAVKLHGGIISHV 126 E+VLLRD Q H Y+QLV+HVDFQRV + KL VPLHF+N SPA K G +I+H Sbjct: 71 GGEKVLLRDLQRHPYRQLVMHVDFQRVSSDAKLSVAVPLHFINQATSPAGKASGVVITHE 130 Query: 127 AAELDVTCLPKNLPEFIEVDLAKLDVGQSIHLADLKLPNGVTAVTQENLTIATATVPAGQ 186 E+ V+CLPK+LPEFIEVDL+ L VG IHL+D+ P GV T+ + A V A Sbjct: 131 LNEVHVSCLPKDLPEFIEVDLSTLSVGHVIHLSDITFPIGVELSTRLDKEHDMAVVIAKH 190 Query: 187 VSAEGEAAA 195 V E + A Sbjct: 191 VVIEDDTPA 199 >NMA1094 [J] COG1825 Ribosomal protein L25 (general stress protein Ctc) NmA Neisseria meningitidis Z2491 Length = 190 Score = 186 bits (471), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 87/177 (49%), Positives = 127/177 (71%), Gaps = 3/177 (1%) Query: 8 RKEQGTGASRRLRRAGQTPGIVYGGTAAPLNIAVDHNALYHALKKETFHSSILDLEIEGK 67 R+ QGTGASRRLRR GQ PGI+YG P+ IAVDH +++AL+KE+FH++++ L + G+ Sbjct: 10 REAQGTGASRRLRREGQIPGILYGEGQEPVAIAVDHKTVFYALEKESFHTALIKLSLNGE 69 Query: 68 VEQVLLRDFQVHAYKQLVLHVDFQRVDASQKLHTKVPLHFVNAEVSPAVKLHGGIISHVA 127 + V++RDFQ+H +++ V H+DFQ V A Q + +VPLH VNAE S AVKL GG +S + Sbjct: 70 TKDVIVRDFQMHPFRREVQHIDFQAVKADQPVRIRVPLHIVNAENSQAVKLQGGRVSLLN 129 Query: 128 AELDVTCLPKNLPEFIEVDLAKLDVGQSIHLADLKLPNGVTAVT---QENLTIATAT 181 ++V LP N+P F+++D A++ G +HL+D+KLP GV +V+ ENL +AT T Sbjct: 130 TTVEVVALPANIPAFLDLDCAEVVAGDILHLSDIKLPEGVESVSLKRNENLAVATVT 186 >NMB0876 [J] COG1825 Ribosomal protein L25 (general stress protein Ctc) Nme Neisseria meningitidis MC58 Length = 190 Score = 186 bits (471), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 87/177 (49%), Positives = 127/177 (71%), Gaps = 3/177 (1%) Query: 8 RKEQGTGASRRLRRAGQTPGIVYGGTAAPLNIAVDHNALYHALKKETFHSSILDLEIEGK 67 R+ QGTGASRRLRR GQ PGI+YG P+ IAVDH +++AL+KE+FH++++ L + G+ Sbjct: 10 REAQGTGASRRLRREGQIPGILYGEGQEPVAIAVDHKTVFYALEKESFHTALIKLSLNGE 69 Query: 68 VEQVLLRDFQVHAYKQLVLHVDFQRVDASQKLHTKVPLHFVNAEVSPAVKLHGGIISHVA 127 + V++RDFQ+H +++ V H+DFQ V A Q + +VPLH VNAE S AVKL GG +S + Sbjct: 70 TKDVIVRDFQMHPFRREVQHIDFQAVKADQLVRIRVPLHIVNAENSQAVKLQGGRVSLLN 129 Query: 128 AELDVTCLPKNLPEFIEVDLAKLDVGQSIHLADLKLPNGVTAVT---QENLTIATAT 181 ++V LP N+P F+++D A++ G +HL+D+KLP GV +V+ ENL +AT T Sbjct: 130 TSVEVVALPANIPAFLDLDCAEVVAGDILHLSDIKLPEGVESVSLKRNENLAVATVT 186 >PA4671 [J] COG1825 Ribosomal protein L25 (general stress protein Ctc) Pae Pseudomonas aeruginosa Length = 204 Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 80/164 (48%), Positives = 107/164 (65%), Gaps = 1/164 (0%) Query: 8 RKEQGTGASRRLRR-AGQTPGIVYGGTAAPLNIAVDHNALYHALKKETFHSSILDLEIEG 66 R + G GASRRLRR AG P +VYGG P ++ ++ + L+ E S ++ L + G Sbjct: 11 RSDLGKGASRRLRRNAGLVPAVVYGGDKEPQSVTLELREIAKLLENEAAFSHVIALNVGG 70 Query: 67 KVEQVLLRDFQVHAYKQLVLHVDFQRVDASQKLHTKVPLHFVNAEVSPAVKLHGGIISHV 126 E VL++ Q H K V+H DF RV A KL VPLHF+N EV+ VK GG ISH Sbjct: 71 AKETVLIKALQRHPAKGFVMHADFLRVVADHKLTAHVPLHFINEEVAVGVKQAGGEISHT 130 Query: 127 AAELDVTCLPKNLPEFIEVDLAKLDVGQSIHLADLKLPNGVTAV 170 +E++V+CLPK+LPEFIEVD+AK+++GQ +HL+DLK P GV V Sbjct: 131 ISEVEVSCLPKDLPEFIEVDMAKVELGQIVHLSDLKAPKGVELV 174 >BMEI0481 [J] COG1825 Ribosomal protein L25 (general stress protein Ctc) Bme Brucella melitensis Length = 233 Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 109/179 (60%), Gaps = 2/179 (1%) Query: 8 RKEQGTGASRRLRRAGQTPGIVYGGTAAPLNIAVDHNALYHALKKETFHSSILDLEIEGK 67 R G G+SR LRR GQ P ++YG PL IAV + +++ + F +++ +E++GK Sbjct: 38 RTRVGKGSSRELRRNGQIPAVIYGDKQEPLAIAVSYKEIFYKIHGGGFKTTVATIEVDGK 97 Query: 68 VEQVLLRDFQVHAYKQLVLHVDFQRVDASQKLHTKVPLHFVNAEVSPAVKLHGGIISHVA 127 QVL +D+Q+ + HVDF RV A +H VP+HF N E +P +K GG+++ V Sbjct: 98 KIQVLPKDYQLDPVRDFPQHVDFLRVSAKSVVHVNVPVHFKNEEAAPGIK-RGGVLNVVR 156 Query: 128 AELDVTCLPKNLPEFIEVDLAKLDVGQSIHLADLKLPNGVT-AVTQENLTIATATVPAG 185 ++++ +PE +E+DL+ L++G S+H++ +KLP G T A+ + TIAT PAG Sbjct: 157 HDVELIVPANAIPEALEIDLSGLEIGDSVHISAVKLPKGATPAIQDRDFTIATIAAPAG 215 >mlr2692 [J] COG1825 Ribosomal protein L25 (general stress protein Ctc) Mlo Mesorhizobium loti Length = 213 Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 67/187 (35%), Positives = 114/187 (60%), Gaps = 5/187 (2%) Query: 8 RKEQGTGASRRLRRAGQTPGIVYGGTAAPLNIAVDHNALYHALKKETFHSSILDLEIEGK 67 R++ G G++R +RR G+ P ++YG PL IA+ + +Y+ + F ++I ++++GK Sbjct: 13 REQVGKGSARAVRRNGKVPAVIYGDKQPPLAIALTYKDIYYKIHGGGFLTTIATIDVDGK 72 Query: 68 VEQVLLRDFQVHAYKQLVLHVDFQRVDASQKLHTKVPLHFVNAEVSPAVKLHGGIISHVA 127 QVL +DFQ+ K +HVDF R+ +++ VP+HF+N + SP +K GG+++ V Sbjct: 73 KIQVLPKDFQLDPVKDFPVHVDFLRIGKDTEVNVDVPVHFINEDKSPGIK-RGGVLNIVR 131 Query: 128 AELDVTCLPKNLPEFIEVDLAKLDVGQSIHLADLKLPNGVTAV-TQENLTIATATVPAGQ 186 E++ C +PEFI +DL ++G SIH++ ++LP GV V + + TIAT AG Sbjct: 132 HEVEFHCPANAIPEFITIDLTGTNIGDSIHISAVQLPAGVKPVISDRDFTIATI---AGS 188 Query: 187 VSAEGEA 193 + + EA Sbjct: 189 SAMKPEA 195 >AGc4048 [J] COG1825 Ribosomal protein L25 (general stress protein Ctc) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 202 Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 110/181 (60%), Gaps = 3/181 (1%) Query: 8 RKEQGTGASRRLRRAGQTPGIVYGGTAAPLNIAVDHNALYHALKKETFHSSILDLEIEGK 67 R+ G G+SR LRR G P ++YG AP++IA+ N + + F +++ ++++GK Sbjct: 13 RERVGKGSSRELRRNGLIPAVIYGDKQAPISIALSTNEVTKRIHAGGFMTTVGTIDVDGK 72 Query: 68 VEQVLLRDFQVHAYKQLVLHVDFQRVDASQKLHTKVPLHFVNAEVSPAVKLHGGIISHVA 127 +VL +D+Q+ + +HVDF RV + ++ ++P+HF N E S +K+ GG+++ V Sbjct: 73 KIKVLPKDYQLDPVRDFTMHVDFLRVSGNTLVNVEIPVHFENEEKS-DIKI-GGVLNIVR 130 Query: 128 AELDVTCLPKNLPEFIEVDLAKLDVGQSIHLADLKLPNGVTAVTQE-NLTIATATVPAGQ 186 ++ C ++PE I VDL+ L +G S+H++++KLP +T V + + TIAT PA Sbjct: 131 HTVEFHCPANDIPEAITVDLSGLKIGDSVHISNVKLPKNITPVIADRDFTIATIVAPAAG 190 Query: 187 V 187 V Sbjct: 191 V 191 >SMc02692 [J] COG1825 Ribosomal protein L25 (general stress protein Ctc) Sme Sinorhizobium meliloti Length = 204 Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 102/175 (58%), Gaps = 2/175 (1%) Query: 8 RKEQGTGASRRLRRAGQTPGIVYGGTAAPLNIAVDHNALYHALKKETFHSSILDLEIEGK 67 R G G+SR LRR G P ++YG PL+IA+ + + F +++ +++ G+ Sbjct: 12 RDRVGKGSSRELRRNGLIPAVIYGDKQPPLSIALSTKDVTMKIHAGGFMTTVATIDVNGE 71 Query: 68 VEQVLLRDFQVHAYKQLVLHVDFQRVDASQKLHTKVPLHFVNAEVSPAVKLHGGIISHVA 127 +VL +D+Q+ + +HVDF RV ++ +VP+HF N E SP +K GG ++ V Sbjct: 72 KIRVLPKDYQLDPVRDFTMHVDFLRVSKGSQVSVQVPVHFENEEKSPGLK-QGGALNIVR 130 Query: 128 AELDVTCLPKNLPEFIEVDLAKLDVGQSIHLADLKLPNGVTAVTQE-NLTIATAT 181 E+++ N+PE + VDL L +G ++H++++KLP G T V + + T+AT T Sbjct: 131 HEVELNVSADNIPESLTVDLTGLKIGDTVHISNVKLPAGATPVIADRDFTVATIT 185 >CC0485 [J] COG1825 Ribosomal protein L25 (general stress protein Ctc) Ccr Caulobacter vibrioides Length = 197 Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 1/188 (0%) Query: 8 RKEQGTGASRRLRRAGQTPGIVYGGTAAPLNIAVDHNALYHALKKETFHSSILDLEIEGK 67 R GTG +R RRAG+ PG++YGG AP+NIAV N +L ++ L+ + Sbjct: 11 RDGAGTGNARATRRAGKVPGVLYGGGKAPVNIAVKANEFRKSLYTGKLLGHLVTLQYGEE 70 Query: 68 VEQVLLRDFQVHAYKQLVLHVDFQRVDASQKLHTKVPLHFVNAEVSPAVKLHGGIISHVA 127 + V+ + Q H +H D RVD Q + +VP+HF N E S +K GG + + Sbjct: 71 KQSVIAKAVQFHPVTDEPVHFDLYRVDEHQLIKIEVPVHFKNHETSVGLK-KGGTLEVIR 129 Query: 128 AELDVTCLPKNLPEFIEVDLAKLDVGQSIHLADLKLPNGVTAVTQENLTIATATVPAGQV 187 +++ C +PE + +DLA D+G I ++++KLP GV + IA + Sbjct: 130 HTVELACPADKIPEELVIDLAGHDIGDVIRISEVKLPEGVKPAMDRDFVIANVKASSAAQ 189 Query: 188 SAEGEAAA 195 S G+ A Sbjct: 190 SDAGDTTA 197