BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0033.p         (105 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3079 [R] COG1033 Predicted exporters of the RND superfamily Pa...    91   7e-19

>PA3079 [R] COG1033 Predicted exporters of the RND superfamily Pae
           Pseudomonas aeruginosa
          Length = 793

 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 2/105 (1%)

Query: 1   VDYAFYIYNRLQLHLAAGLAIEEALHNAIQEVGIATIFTAITLAIGVATWSFSHLKFQAD 60
           VDY  YIY RL+  L  GL ++EA +  ++  G A +FT + LAIGVATW FS +KFQAD
Sbjct: 691 VDYGIYIYTRLESFLRMGLPLQEAYYETLRSTGKAVLFTGLCLAIGVATWIFSAIKFQAD 750

Query: 61  MGKLLAFMFLVNLIMAMTALPAFAVVLDKMFPRKSPIKLNSALAH 105
           MG +L FM L N+  A+  LPA A  L  + P K   +  S  AH
Sbjct: 751 MGLMLTFMLLWNMFGALWLLPALARFL--INPAKLQARKASLFAH 793