BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0010.p (109 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl3051 [M] COG0787 Alanine racemase Atu Agrobacterium tumefacie... 103 9e-23 mll3997 [M] COG0787 Alanine racemase Mlo Mesorhizobium loti 102 3e-22 BMEII0374 [M] COG0787 Alanine racemase Bme Brucella melitensis 92 2e-19 CC1661 [M] COG0787 Alanine racemase Ccr Caulobacter vibrioides 84 7e-17 RP095 [M] COG0787 Alanine racemase Rpr Rickettsia prowazekii 82 2e-16 RC0128 [M] COG0787 Alanine racemase Rco Rickettsia conorii 82 3e-16 XF0852 [M] COG0787 Alanine racemase Xfa Xylella fastidiosa 9a5c 79 2e-15 PA4930 [M] COG0787 Alanine racemase Pae Pseudomonas aeruginosa 77 1e-14 YPO0321 [M] COG0787 Alanine racemase Ype Yersinia pestis 75 4e-14 VC0372 [M] COG0787 Alanine racemase Vch Vibrio cholerae 72 4e-13 >AGl3051 [M] COG0787 Alanine racemase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 388 Score = 103 bits (257), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 56/109 (51%), Positives = 69/109 (63%) Query: 1 VGYNHTWQASRPTRVGTIALGYADGYLRSASNRGVLRLEGVEAPLIGRVSMDSITVDLSA 60 VGY ++ AS PTR+ TIA GYADG RS SNRG GV P+ GRVSMDSI +D+SA Sbjct: 265 VGYGGSFTASVPTRLATIAAGYADGLPRSLSNRGAAWYNGVRLPIAGRVSMDSIILDISA 324 Query: 61 IDPARLRPGLLFDVLDAQQDINALAVQAGTNAYEILTSLRHRYRRHYLE 109 + L G L ++ Q + +A AGT AYEILT L RYRR Y++ Sbjct: 325 LPEGTLTQGSLVQMIGPDQTLEDIAEDAGTIAYEILTGLGRRYRRSYIQ 373 >mll3997 [M] COG0787 Alanine racemase Mlo Mesorhizobium loti Length = 381 Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 51/108 (47%), Positives = 70/108 (64%), Gaps = 2/108 (1%) Query: 1 VGYNHTWQASRPTRVGTIALGYADGYLRSASNRGVLRLEGVEAPLIGRVSMDSITVDLSA 60 +GY H++ A P + TI+ GYADG+LR +++ EGV P +GRVSMDSI +D+SA Sbjct: 274 IGYGHSYHADGPLSLATISFGYADGWLRRSAS--AAWFEGVRLPFLGRVSMDSIILDISA 331 Query: 61 IDPARLRPGLLFDVLDAQQDINALAVQAGTNAYEILTSLRHRYRRHYL 108 + P RLR G L ++L Q ++ A AGT YEIL SL R+ RHY+ Sbjct: 332 LPPGRLREGDLVELLGPSQSVDDAAGHAGTIGYEILASLGPRFHRHYV 379 >BMEII0374 [M] COG0787 Alanine racemase Bme Brucella melitensis Length = 399 Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 48/108 (44%), Positives = 68/108 (62%) Query: 1 VGYNHTWQASRPTRVGTIALGYADGYLRSASNRGVLRLEGVEAPLIGRVSMDSITVDLSA 60 VGY T+ A+ P R+ TIA+GYADG RS SN+G P+IGRVSMDSIT+D+++ Sbjct: 281 VGYGGTYVANGPMRIATIAVGYADGLFRSLSNKGAAFFGDTRLPIIGRVSMDSITLDVTS 340 Query: 61 IDPARLRPGLLFDVLDAQQDINALAVQAGTNAYEILTSLRHRYRRHYL 108 + L+ G L +++ Q + +A T YEILT+L +RY R Y+ Sbjct: 341 LPEGTLKLGSLVELIGPHQRLEDVARDCDTIPYEILTALGNRYARVYV 388 >CC1661 [M] COG0787 Alanine racemase Ccr Caulobacter vibrioides Length = 364 Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 48/108 (44%), Positives = 64/108 (59%), Gaps = 2/108 (1%) Query: 1 VGYNHTWQASRPTRVGTIALGYADGYLRSASNRGVLRLEGVEAPLIGRVSMDSITVDLSA 60 +GY W AS TRV +A GYADG R+A RG + +G P++GRVSMD I VD++ Sbjct: 255 IGYGAGWTASDNTRVAIVAAGYADGVPRAAFPRGEVWFDGARRPMLGRVSMDLIAVDVTD 314 Query: 61 IDPARLRPGLLFDVLDAQQDINALAVQAGTNAYEILTSLRHRYRRHYL 108 D A RPG + ++ A ++ A AGT+AYE LT L R R Y+ Sbjct: 315 CDAA--RPGAMVELFGANLPVDDAADAAGTSAYERLTRLTLRGVRRYV 360 >RP095 [M] COG0787 Alanine racemase Rpr Rickettsia prowazekii Length = 404 Score = 82.4 bits (202), Expect = 2e-16, Method: Composition-based stats. Identities = 39/108 (36%), Positives = 66/108 (61%) Query: 1 VGYNHTWQASRPTRVGTIALGYADGYLRSASNRGVLRLEGVEAPLIGRVSMDSITVDLSA 60 +GYN T+ R + + T+ LGYADG+ R+ S++G + + P++GRVSMD I +D++ Sbjct: 296 IGYNMTFTTKRDSVIATLPLGYADGFSRNFSSQGEVFINSCSVPIVGRVSMDLINIDVTD 355 Query: 61 IDPARLRPGLLFDVLDAQQDINALAVQAGTNAYEILTSLRHRYRRHYL 108 + P+ + G +++ + +A GT YE+LTSL RY+R Y+ Sbjct: 356 LPPSEVFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTSLGSRYKRKYI 403 >RC0128 [M] COG0787 Alanine racemase Rco Rickettsia conorii Length = 355 Score = 82.0 bits (201), Expect = 3e-16, Method: Composition-based stats. Identities = 39/108 (36%), Positives = 66/108 (61%) Query: 1 VGYNHTWQASRPTRVGTIALGYADGYLRSASNRGVLRLEGVEAPLIGRVSMDSITVDLSA 60 +GYN T+ R + + T+ LGYADG+ R+ SN+G + + P++GRVSMD I +D++ Sbjct: 247 IGYNMTFTTKRDSVIATLPLGYADGFSRNFSNQGEVFINSRSVPIVGRVSMDLINIDVTD 306 Query: 61 IDPARLRPGLLFDVLDAQQDINALAVQAGTNAYEILTSLRHRYRRHYL 108 + P+ + G +++ + +A GT YE+LT+L RY+R Y+ Sbjct: 307 LPPSEIFLGQEAEIIGNYCTPDKIASIIGTIGYEVLTNLGSRYKRKYI 354 >XF0852 [M] COG0787 Alanine racemase Xfa Xylella fastidiosa 9a5c Length = 365 Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/108 (43%), Positives = 62/108 (57%), Gaps = 3/108 (2%) Query: 1 VGYNHTWQASRPTRVGTIALGYADGYLRSASNRGVLRLEGVEAPLIGRVSMDSITVDLSA 60 VGY + RPTRVG +A+GYADGY A N L ++G PLIGRVSMD +TVDL+ Sbjct: 255 VGYGACFVTERPTRVGVVAMGYADGYPYFAVNGTPLLVDGRVCPLIGRVSMDMLTVDLT- 313 Query: 61 IDPARLRPGLLFDVLDAQQDINALAVQAGTNAYEILTSLRHRYRRHYL 108 D + G + Q + LA +AY++L L+ R RR+YL Sbjct: 314 -DHPQADVGSQVQLWGVQPGVAELAAHCNLSAYQLLCGLK-RVRRYYL 359 >PA4930 [M] COG0787 Alanine racemase Pae Pseudomonas aeruginosa Length = 358 Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 2/107 (1%) Query: 1 VGYNHTWQASRPTRVGTIALGYADGYLRSASNRGVLRLEGVEAPLIGRVSMDSITVDLSA 60 VGY TW A RP R+GT++ GYADGY R+A + + G A L GRVSMD + VDLS Sbjct: 252 VGYGATWIAERPARIGTVSCGYADGYPRTAPAGTPVLVGGRRAILAGRVSMDMLAVDLSD 311 Query: 61 IDPARLRPGLLFDVLDAQQDINALAVQAGTNAYEILTSLRHRYRRHY 107 + AR+ G ++ A ++ +A GT YE+L+ + R R Y Sbjct: 312 LPEARV--GDPVELWGAGLSVDEVARACGTLGYELLSKVTARVPRRY 356 >YPO0321 [M] COG0787 Alanine racemase Ype Yersinia pestis Length = 359 Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 2/108 (1%) Query: 1 VGYNHTWQASRPTRVGTIALGYADGYLRSASNRGVLRLEGVEAPLIGRVSMDSITVDLSA 60 VGY TW + R TR+G IA+GY DGY RSA + + L G E ++GRVSMD I++DL Sbjct: 252 VGYGGTWVSERDTRLGVIAIGYGDGYPRSAPSGTPVWLNGREVSIVGRVSMDMISIDLGP 311 Query: 61 IDPARLRPGLLFDVLDAQQDINALAVQAGTNAYEILTSLRHRYRRHYL 108 ++ L + A+ + +A G +AYE++T+L R YL Sbjct: 312 ESTDKVGDEAL--MWGAELPVERVAACTGISAYELITNLTSRVAMEYL 357 >VC0372 [M] COG0787 Alanine racemase Vch Vibrio cholerae Length = 375 Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 6/109 (5%) Query: 1 VGYNHTWQASRPTRVGTIALGYADGYLRSASNRGVLRLEGVEAPLIGRVSMDSITVDLS- 59 VGY TW + R T++G IA+GY DGY R+A N + + G P+ GRVSMD +TVDL Sbjct: 266 VGYGGTWTSQRDTKIGVIAIGYGDGYPRTAPNGTPVVVNGRRVPIAGRVSMDMLTVDLGP 325 Query: 60 -AIDPARLRPGLLFDVLDAQQDINALAVQAGTNAYEILTSLRHRYRRHY 107 A D R G + + + +A GT YE++T L R Y Sbjct: 326 DACD----RVGDEAMLWGNELPVEEVAAHIGTIGYELVTKLTSRVEMSY 370