BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0139.p (217 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM2794 [K] COG1802 Transcriptional regulators Sty Salmonella ty... 110 3e-24 mlr4761 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 107 1e-23 ygaE [K] COG1802 Transcriptional regulators Eco Escherichia coli... 99 9e-21 ZygaE [K] COG1802 Transcriptional regulators EcZ Escherichia col... 99 9e-21 ECs3525 [K] COG1802 Transcriptional regulators Ecs Escherichia c... 99 9e-21 mlr0625 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 93 6e-19 mlr7144 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 66 7e-11 PA0797 [K] COG1802 Transcriptional regulators Pae Pseudomonas ae... 64 3e-10 SMa0065 [K] COG1802 Transcriptional regulators Sme Sinorhizobium... 62 7e-10 >STM2794 [K] COG1802 Transcriptional regulators Sty Salmonella typhimurium LT2 Length = 225 Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 106/185 (57%), Gaps = 8/185 (4%) Query: 6 LATEYSVSLSAIREALSRLAAEGLLDAEDHRGFRVAKVSKADLMDLTQTRCEIECIALRR 65 L Y++ + +REALS+L AE L+ + +G+RVA +S+A+L+D+ R +E + +R Sbjct: 36 LTARYALGVGPLREALSQLVAERLVTVVNQKGYRVASMSEAELLDIFDARANMEAMLVRL 95 Query: 66 SIESGDAAWEARVTA---AFRALQASEGKARPLDQRRYELHSDFHHALLEACGSEWLLRL 122 +IE GD AWEA + A L+AS+ LD+ + H FH A++ CGS +LL++ Sbjct: 96 AIERGDDAWEAEILARAHMLSKLEASDASEHMLDEWD-QRHQAFHSAIVAGCGSHYLLQM 154 Query: 123 RGMLFERAERYRLLSGNYPKVRREV----HAEHEQLYEAVMKRDAATATAILTQHTLETT 178 R LF+ A RYR + + E+ H +H L EA++ R+AA A+ ++ QH L Sbjct: 155 RERLFDLAARYRFIWLRETVLSVEMLEDKHIQHHTLTEAILAREAARASELMRQHLLTPI 214 Query: 179 KALLQ 183 + Q Sbjct: 215 PIIRQ 219 >mlr4761 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 247 Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 67/172 (38%), Positives = 93/172 (54%), Gaps = 4/172 (2%) Query: 6 LATEYSVSLSAIREALSRLAAEGLLDAEDHRGFRVAKVSKADLMDLTQTRCEIECIALRR 65 + ++Y S +REAL+RLA+EGLL D RGF + VS A+L +LT+TRC +E ALR Sbjct: 47 VVSKYGAGASPVREALNRLASEGLLGRHDQRGFFIMPVSAAELEELTRTRCWLEERALRE 106 Query: 66 SIESGDAAWEARVTAAF----RALQASEGKARPLDQRRYELHSDFHHALLEACGSEWLLR 121 SI A WE ++ A RA + S A LD +LH FH L+ AC S WL+ Sbjct: 107 SIAHRTAEWEEQLVLALHRLGRASRLSPQNATSLDPDWEKLHRTFHRVLISACRSHWLVG 166 Query: 122 LRGMLFERAERYRLLSGNYPKVRREVHAEHEQLYEAVMKRDAATATAILTQH 173 L + A RYR ++ + + R+ AEH Q+ E + +A A L H Sbjct: 167 FCDQLSDHAYRYRQMANDGESIPRDDFAEHRQIAEYALDGNADEAVKALIDH 218 >ygaE [K] COG1802 Transcriptional regulators Eco Escherichia coli K12 Length = 226 Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 64/191 (33%), Positives = 104/191 (54%), Gaps = 20/191 (10%) Query: 6 LATEYSVSLSAIREALSRLAAEGLLDAEDHRGFRVAKVSKADLMDLTQTRCEIECIALRR 65 L + Y++ + +REALS+L AE L+ + +G+RVA +S+ +L+D+ R +E + + Sbjct: 38 LTSRYALGVGPLREALSQLVAERLVTVVNQKGYRVASMSEQELLDIFDARANMEAMLVSL 97 Query: 66 SIESGDAAWEARVTAA---FRALQASEGKARPLDQRRYEL-HSDFHHALLEACGSEWLLR 121 +I G WEA V A L+A + + LD+ ++L H FH A++ CGS +LL+ Sbjct: 98 AIARGGDEWEADVLAKAHLLSKLEACDASEKMLDE--WDLRHQAFHTAIVAGCGSHYLLQ 155 Query: 122 LRGMLFERAERYRLLSGNYPKVRREV---------HAEHEQLYEAVMKRDAATATAILTQ 172 +R LF+ A RYR + +RR V H +H+ L AV+ RD A A+ ++ Q Sbjct: 156 MRERLFDLAARYRFI-----WLRRTVLSVEMLEDKHDQHQTLTAAVLARDTARASELMRQ 210 Query: 173 HTLETTKALLQ 183 H L + Q Sbjct: 211 HLLTPIPIIQQ 221 >ZygaE [K] COG1802 Transcriptional regulators EcZ Escherichia coli O157:H7 EDL933 Length = 226 Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 64/191 (33%), Positives = 104/191 (54%), Gaps = 20/191 (10%) Query: 6 LATEYSVSLSAIREALSRLAAEGLLDAEDHRGFRVAKVSKADLMDLTQTRCEIECIALRR 65 L + Y++ + +REALS+L AE L+ + +G+RVA +S+ +L+D+ R +E + + Sbjct: 38 LTSRYALGVGPLREALSQLVAERLVTVVNQKGYRVASMSEQELLDIFDARANMEAMLVSL 97 Query: 66 SIESGDAAWEARVTAA---FRALQASEGKARPLDQRRYEL-HSDFHHALLEACGSEWLLR 121 +I G WEA V A L+A + + LD+ ++L H FH A++ CGS +LL+ Sbjct: 98 AIARGGDEWEADVLAKAHLLSKLEACDASEKMLDE--WDLRHQAFHTAIVAGCGSHYLLQ 155 Query: 122 LRGMLFERAERYRLLSGNYPKVRREV---------HAEHEQLYEAVMKRDAATATAILTQ 172 +R LF+ A RYR + +RR V H +H+ L AV+ RD A A+ ++ Q Sbjct: 156 MRERLFDLAARYRFI-----WLRRTVLSVEMLEDKHDQHQTLTAAVLARDTARASELMRQ 210 Query: 173 HTLETTKALLQ 183 H L + Q Sbjct: 211 HLLTPIPIIQQ 221 >ECs3525 [K] COG1802 Transcriptional regulators Ecs Escherichia coli O157:H7 Length = 226 Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 64/191 (33%), Positives = 104/191 (54%), Gaps = 20/191 (10%) Query: 6 LATEYSVSLSAIREALSRLAAEGLLDAEDHRGFRVAKVSKADLMDLTQTRCEIECIALRR 65 L + Y++ + +REALS+L AE L+ + +G+RVA +S+ +L+D+ R +E + + Sbjct: 38 LTSRYALGVGPLREALSQLVAERLVTVVNQKGYRVASMSEQELLDIFDARANMEAMLVSL 97 Query: 66 SIESGDAAWEARVTAA---FRALQASEGKARPLDQRRYEL-HSDFHHALLEACGSEWLLR 121 +I G WEA V A L+A + + LD+ ++L H FH A++ CGS +LL+ Sbjct: 98 AIARGGDEWEADVLAKAHLLSKLEACDASEKMLDE--WDLRHQAFHTAIVAGCGSHYLLQ 155 Query: 122 LRGMLFERAERYRLLSGNYPKVRREV---------HAEHEQLYEAVMKRDAATATAILTQ 172 +R LF+ A RYR + +RR V H +H+ L AV+ RD A A+ ++ Q Sbjct: 156 MRERLFDLAARYRFI-----WLRRTVLSVEMLEDKHDQHQTLTAAVLARDTARASELMRQ 210 Query: 173 HTLETTKALLQ 183 H L + Q Sbjct: 211 HLLTPIPIIQQ 221 >mlr0625 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 259 Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 94/200 (47%), Gaps = 22/200 (11%) Query: 10 YSVSLSAIREALSRLAAEGLLDAEDHRGFRVAKVSKADLMDLTQTRCEIECIALRRSIES 69 Y V + +REALSRL AE L+ A +RGF VA VS+A+L DL + R +E SI + Sbjct: 43 YGVGWTPLREALSRLEAERLVTAISNRGFAVAPVSRAELEDLARARMVVEMPLFLESIAN 102 Query: 70 GDAAWE-ARVTAAFRALQASEGKARPLD---QRRYELHSDFHHALLEACGSEWLLRLRGM 125 G WE A VTA +R + P D + E H FH ALL A S WLLR R Sbjct: 103 GGREWEDAVVTAHYRLSRCKTAVEDPSDAAVDKWDESHEAFHAALLSAATSNWLLRFRST 162 Query: 126 LFERAERYRLLSGNYPKVR----------------REVHA--EHEQLYEAVMKRDAATAT 167 + ++ R+ G P +R RE A H ++ EA + RD A Sbjct: 163 IADQLRRHHRFLGLAPTLRAAAGLKDGYGEAMDALREAIAIEHHTEIMEAALDRDVERAK 222 Query: 168 AILTQHTLETTKALLQIEDQ 187 A++T H T + ED Sbjct: 223 ALMTAHIGYTLHVYVHSEDN 242 >mlr7144 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 253 Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 91/186 (48%), Gaps = 8/186 (4%) Query: 6 LATEYSVSLSAIREALSRLAAEGLLDAEDHRGFRVAKVSKADLMDLTQTRCEIECIALRR 65 LA ++ S IR+AL +L AEG++ +G VA++ A++ ++ R +EC ALR Sbjct: 70 LAEQFGFSRMPIRDALRQLEAEGIVSIHPTKGAHVARMDGAEISEIYAVRELLECEALRL 129 Query: 66 SIESGDAAWEARVTAAFRALQASEGKARPLDQRRYELHSDFHHALLEACGSEWLLRLRGM 125 SI A + ++ A + L + + R L+ FH +L ACG++ LL L Sbjct: 130 SIP---ALLDGKLDEAEQVLDQIDAERNV--GRWGALNRTFHLSLYAACGNQRLLGLIEA 184 Query: 126 LFERAERY-RLLSGNYPKVRREVHAEHEQLYEAVMKRDAATATAILTQHTLETTKALLQ- 183 A+RY R+L N R AEH L A +RD A ++L QH E + L+ Sbjct: 185 HHNAADRYVRILLSNL-DYRTRSQAEHRDLLAACRQRDGKKAVSVLRQHLREGSGTLVNA 243 Query: 184 IEDQAL 189 IE L Sbjct: 244 IEGGGL 249 >PA0797 [K] COG1802 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 240 Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 7/177 (3%) Query: 1 LSAARLATEYSVSLSAIREALSRLAAEGLLDAEDHRGFRVAKVSKADLMDLTQTRCEIEC 60 +S LA Y +S +REA+ RL LL H G RV +S A+L++L + R +E Sbjct: 41 ISEPELARTYGISRGPLREAIHRLEGLRLLVRVPHVGARVVSLSHAELIELYEIRESLEG 100 Query: 61 IALRRSIESGDAAWEARVTAAFRALQASEGKARPLDQRRY---ELHSDFHHALLEACGSE 117 +A R + E +A + R L E R Y E DFH+ +++ G+ Sbjct: 101 MACRLAAER---MSQAEIDELRRVLDTHERDEAFQAGRGYYQQEGDYDFHYRIIQGSGNA 157 Query: 118 WLLR-LRGMLFERAERYRLLSGNYPKVRREVHAEHEQLYEAVMKRDAATATAILTQH 173 L R L G L++ YR+ P R+ AEH ++ +A+ RD A ++ +H Sbjct: 158 TLTRMLCGELYQLVRMYRIQYSTTPNRPRQAFAEHHRILDAIADRDGELAELLMRRH 214 >SMa0065 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 230 Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 8/186 (4%) Query: 1 LSAARLATEYSVSLSAIREALSRLAAEGLLDAEDHRGFRVAKVSKADLMDLTQTRCEIEC 60 +S A +A S+S +REA +LA EGL+ RG V ++S A +MD+ R IE Sbjct: 39 ISEAEIARSLSISRQPVREAFIKLAEEGLVQVLPQRGTYVTRISTASVMDVRFVREAIEA 98 Query: 61 IALRRSIESGDAAWEARVTAAFRALQASEGKARPLDQRRYELHSD--FHHALLEACGSEW 118 +R+ AA + R Q + K P D R L D FHH L A G Sbjct: 99 DIVRQVAGEHPAA----IVDELRE-QIARQKQVPHDDRAAFLRLDELFHHTLATAAGRAH 153 Query: 119 LLRLRGMLFERAERYRLLSGNYPKVRREVHAEHEQLYEAVMKRDAATATAILTQHTLETT 178 + + + +R R LS + ++ R + +HE++ +A+ RD A L H E Sbjct: 154 AWSVIESVKAQMDRVRFLSVDDLQIGRLIE-QHERIVDAIAARDVGGAEQALRMHLREIL 212 Query: 179 KALLQI 184 K+L +I Sbjct: 213 KSLPEI 218