BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0125.p (152 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0589 [H] COG0054 Riboflavin synthase beta-chain Bme Brucell... 172 2e-43 mll7281 [H] COG0054 Riboflavin synthase beta-chain Mlo Mesorhizo... 157 6e-39 SMc01609 [H] COG0054 Riboflavin synthase beta-chain Sme Sinorhiz... 155 3e-38 CC0888 [H] COG0054 Riboflavin synthase beta-chain Ccr Caulobacte... 76 3e-14 SP0175 [H] COG0054 Riboflavin synthase beta-chain Spn Streptococ... 70 1e-12 XF0954 [H] COG0054 Riboflavin synthase beta-chain Xfa Xylella fa... 69 4e-12 DR0156 [H] COG0054 Riboflavin synthase beta-chain Dra Deinococcu... 67 1e-11 L0166 [H] COG0054 Riboflavin synthase beta-chain Lla Lactococcus... 65 4e-11 FN1505 [H] COG0054 Riboflavin synthase beta-chain Fnu Fusobacter... 64 1e-10 SA1586 [H] COG0054 Riboflavin synthase beta-chain Sau Staphyloco... 63 3e-10 >BMEII0589 [H] COG0054 Riboflavin synthase beta-chain Bme Brucella melitensis Length = 158 Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 84/142 (59%), Positives = 104/142 (73%), Gaps = 3/142 (2%) Query: 1 VQSCWHKEIVDQCRIAFLEELAKAGISAADCDFFEVPGAFEIPLHAKLLAKSGNYAAVAC 60 +Q+ WH +IVD+ R +F+ ELA + + + F+VPGA+EIPLHAK LA++G YAA+ Sbjct: 16 IQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVG 75 Query: 61 AGLVVDGGIYRHDFVAQAVISGLMQVQLETEVVVLSAVLTPHHFHAGSEHFNFFHEHFLV 120 A V+DGGIYRHDFVA AVI+G+MQVQLETEV VLS VLTPHHFH EH +FFH HF V Sbjct: 76 AAFVIDGGIYRHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKV 135 Query: 121 KGRELAQACLGTV---GKVAAL 139 KG E A A L V ++AAL Sbjct: 136 KGVEAAHAALQIVSERSRIAAL 157 >mll7281 [H] COG0054 Riboflavin synthase beta-chain Mlo Mesorhizobium loti Length = 157 Score = 157 bits (398), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 76/130 (58%), Positives = 94/130 (72%) Query: 1 VQSCWHKEIVDQCRIAFLEELAKAGISAADCDFFEVPGAFEIPLHAKLLAKSGNYAAVAC 60 V++ WH +IVDQC AF E+A G D F+VPGA+EIPLHA+ LA++G Y AV Sbjct: 17 VRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVLG 76 Query: 61 AGLVVDGGIYRHDFVAQAVISGLMQVQLETEVVVLSAVLTPHHFHAGSEHFNFFHEHFLV 120 VV+GGIYRH+FVA AVI G+M VQL T V VLSAVLTPH++H +EH FF EHF V Sbjct: 77 TAFVVNGGIYRHEFVASAVIDGMMNVQLSTGVPVLSAVLTPHNYHDSAEHHRFFFEHFTV 136 Query: 121 KGRELAQACL 130 KG+E A+AC+ Sbjct: 137 KGKEAARACV 146 >SMc01609 [H] COG0054 Riboflavin synthase beta-chain Sme Sinorhizobium meliloti Length = 175 Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 72/129 (55%), Positives = 94/129 (72%) Query: 1 VQSCWHKEIVDQCRIAFLEELAKAGISAADCDFFEVPGAFEIPLHAKLLAKSGNYAAVAC 60 V++ WH +IVD+C AF+ + K G SAAD + F+VPGA EIPLHA+ LA++G YAA+ Sbjct: 32 VRARWHADIVDRCVDAFVAQWTKLGGSAADVEIFDVPGALEIPLHAQALARTGRYAAILG 91 Query: 61 AGLVVDGGIYRHDFVAQAVISGLMQVQLETEVVVLSAVLTPHHFHAGSEHFNFFHEHFLV 120 VV+GGIYRHDFV+ V+ G+M+VQL+T+V VLSAVLTPH+F FF +HF+V Sbjct: 92 TAFVVNGGIYRHDFVSGTVLDGMMRVQLDTDVPVLSAVLTPHNFQESEPLIAFFRDHFVV 151 Query: 121 KGRELAQAC 129 KG E A AC Sbjct: 152 KGEEAANAC 160 >CC0888 [H] COG0054 Riboflavin synthase beta-chain Ccr Caulobacter vibrioides Length = 153 Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 65/133 (48%), Gaps = 3/133 (2%) Query: 1 VQSCWHKEIVDQCRIAFLEELAKAGISAADCDFFEVPGAFEIPLHAKLLAKSGNYAAVAC 60 V S ++ E+ D L+ LA G A D PGA+E+PL A+ LA++G YA V C Sbjct: 12 VVSQFNPEVTDGLLKGALDHLAAQGAPVAAPDIIAAPGAYELPLIAQTLARTGRYAGVVC 71 Query: 61 AGLVVDGGIYRHDFVAQAVISGLMQVQLETEVVVLSAVLTPHHFHAGSEHFNFFHEHFLV 120 G V+ G +F++ GLM L+TE V VLT + E+ Sbjct: 72 LGCVIKGETAHFEFISLGASLGLMAAGLQTETPVSFGVLTTYTDEQAVARSRDDAEN--- 128 Query: 121 KGRELAQACLGTV 133 KGRE A ACL TV Sbjct: 129 KGREAANACLSTV 141 >SP0175 [H] COG0054 Riboflavin synthase beta-chain Spn Streptococcus pneumoniae TIGR4 Length = 155 Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 13/127 (10%) Query: 18 LEELAKAGISAADCDFFEVPGAFEIPLHAKLLAKSGNYAAVACAGLVVDGGIYRHDFVAQ 77 L+ L + ++ D + VPGAFEIPL A +AKS Y A+ C G V+ G +D+V Sbjct: 35 LDNLKRENVNEKDIEVAWVPGAFEIPLIASKMAKSKKYDAIICLGAVIRGNTSHYDYVCS 94 Query: 78 AVISGLMQVQLETEVVVLSAVLTPHHF-----HAGSEHFNFFHEHFLVKGRELAQACLGT 132 V G+ Q+ L +E+ V+ VLT AG++ N KG E AQ + Sbjct: 95 EVSKGIAQISLNSEIPVMFGVLTTDTIEQAIERAGTKAGN--------KGSECAQGAIEM 146 Query: 133 VGKVAAL 139 V + L Sbjct: 147 VNLIRTL 153 >XF0954 [H] COG0054 Riboflavin synthase beta-chain Xfa Xylella fastidiosa 9a5c Length = 154 Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 63/138 (45%), Gaps = 13/138 (9%) Query: 1 VQSCWHKEIVDQCRIAFLEELAKAGISAADCDFFEVPGAFEIPLHAKLLAKSGNYAAVAC 60 V S W+ I D L G+S D VPGA+EIP+ A LLA+ G +AA+ Sbjct: 18 VCSRWNARITDALVAGACRTLVDNGVSDDAVDVVRVPGAWEIPIVANLLAQVGQHAAIIA 77 Query: 61 AGLVVDGGIYRHDFVAQAVISGLMQVQLETEVVVLSAVLTPH-----HFHAGSEHFNFFH 115 G VV G ++ VA G+M VQ++T V VL+ VL AG H N Sbjct: 78 LGCVVRGDTRHYEHVADLCAEGMMSVQMQTGVPVLNGVLAVECIKDAEMRAGGSHGN--- 134 Query: 116 EHFLVKGRELAQACLGTV 133 KG E A A L V Sbjct: 135 -----KGAETALAALEMV 147 >DR0156 [H] COG0054 Riboflavin synthase beta-chain Dra Deinococcus radiodurans Length = 155 Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 8/104 (7%) Query: 1 VQSCWHKEIVDQ----CRIAFLEELAKAGISAADCDFFEVPGAFEIPLHAKLLAKSGNYA 56 V + W+ IVD+ +AF++ G + D F VPG++E+PL A+ LA++G Y Sbjct: 18 VSTRWNHLIVDRLVEGAELAFVQH----GGKTENLDHFLVPGSYEVPLVARRLAETGRYD 73 Query: 57 AVACAGLVVDGGIYRHDFVAQAVISGLMQVQLETEVVVLSAVLT 100 AV C G V+ G +DFVA +G++ L T V V VLT Sbjct: 74 AVVCLGAVIKGDTDHYDFVAGGAANGILNTSLHTGVPVAFGVLT 117 >L0166 [H] COG0054 Riboflavin synthase beta-chain Lla Lactococcus lactis Length = 154 Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 48/93 (51%) Query: 18 LEELAKAGISAADCDFFEVPGAFEIPLHAKLLAKSGNYAAVACAGLVVDGGIYRHDFVAQ 77 L+ L + G+ + D VPGAFEIP+ A+ +A S Y A+ C G V+ G +DFV Sbjct: 35 LDALKRHGVQEEEIDIAWVPGAFEIPIIAQKMATSNKYEAIICLGTVIRGSTSHYDFVCN 94 Query: 78 AVISGLMQVQLETEVVVLSAVLTPHHFHAGSEH 110 V G+ V L + + V+ VLT + E Sbjct: 95 EVSKGIAHVSLNSNIPVMFGVLTTENIEQAIER 127 >FN1505 [H] COG0054 Riboflavin synthase beta-chain Fnu Fusobacterium nucleatum Length = 157 Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/81 (44%), Positives = 44/81 (54%) Query: 30 DCDFFEVPGAFEIPLHAKLLAKSGNYAAVACAGLVVDGGIYRHDFVAQAVISGLMQVQLE 89 D + F VPGAFEIPL AK LA+S Y AV G V+ G D+V V G+ V LE Sbjct: 51 DINLFWVPGAFEIPLIAKKLAQSKKYDAVITLGAVIKGSTPHFDYVCAEVSKGVAHVSLE 110 Query: 90 TEVVVLSAVLTPHHFHAGSEH 110 +EV V+ VLT + E Sbjct: 111 SEVPVIFGVLTTNSIEEAIER 131 >SA1586 [H] COG0054 Riboflavin synthase beta-chain Sau Staphylococcus aureus N315 Length = 154 Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 48/92 (52%) Query: 19 EELAKAGISAADCDFFEVPGAFEIPLHAKLLAKSGNYAAVACAGLVVDGGIYRHDFVAQA 78 + L + ++ + D VPGAFEIPL AK LA SGNY A+ G V+ G +D+V Sbjct: 35 DTLIRHDVNEDNIDVAFVPGAFEIPLVAKKLASSGNYDAIITLGCVIRGATSHYDYVCNE 94 Query: 79 VISGLMQVQLETEVVVLSAVLTPHHFHAGSEH 110 V G+ +V +T V V+ +LT E Sbjct: 95 VAKGVSKVNDQTNVPVIFGILTTESIEQAVER 126