BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0113.p (205 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VC1408 [K] COG1309 Transcriptional regulator Vch Vibrio cholerae 119 4e-27 RSp0815 [K] COG1309 Transcriptional regulator Rso Ralstonia sola... 115 9e-26 mll4816 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ... 103 3e-22 PA3678 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer... 95 9e-20 mlr4833 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ... 93 3e-19 BMEII1117 [K] COG1309 Transcriptional regulator Bme Brucella mel... 92 1e-18 AGl784 [K] COG1309 Transcriptional regulator Atu Agrobacterium t... 85 1e-16 CC0919 [K] COG1309 Transcriptional regulator Ccr Caulobacter vib... 84 2e-16 RSp0443 [K] COG1309 Transcriptional regulator Rso Ralstonia sola... 83 5e-16 SMc03169 [K] COG1309 Transcriptional regulator Sme Sinorhizobium... 77 2e-14 >VC1408 [K] COG1309 Transcriptional regulator Vch Vibrio cholerae Length = 200 Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 107/201 (53%), Gaps = 7/201 (3%) Query: 1 MRVKTVEQRHEFINAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVV 60 MRVK+ E+R + A F +QG+ +M IA G SK TLYNYFSSKEE+F A + Sbjct: 1 MRVKSEEKRQAILEIAKDSFTKQGFEQTSMSHIAKMLGGSKATLYNYFSSKEEIFTAVM- 59 Query: 61 QAGAGAVEELTKVYVEADSARDI---LQRLGLALLRLVSRPDVIALDRLIIGEARRYPEL 117 + A E++ ++ D R++ L G L V D +++ R+ I EA R + Sbjct: 60 --ESSATEQIALSFLSLDHNRELKPALLEFGYNFLNSVLTQDAMSIYRMAIHEADR-SAI 116 Query: 118 ARIFFENGPKRTVAALAEVIARCMDSGKIDARNAELAALHFKAICAGDLIENLMWGTIAQ 177 R F+ENGPKR A L+ I ++ G + + +AA+HFKA+ + E G I + Sbjct: 117 GRHFYENGPKRGWARLSRYITCQIECGSLKECDPWIAAMHFKALLSAQYFEPFSLGAIEK 176 Query: 178 PTKEKLKKISDNAVKVFLDGY 198 PT +LK + AV+ FL Y Sbjct: 177 PTSSELKATTQRAVEAFLCLY 197 >RSp0815 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum Length = 207 Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 70/198 (35%), Positives = 102/198 (51%), Gaps = 1/198 (0%) Query: 1 MRVKTVEQRHEFINAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVV 60 MR KT E+R I+AA H+F + G+ +M IAA +G SK TLYNYFSSKEE+F + Sbjct: 1 MRKKTEEKRQSIIDAAFHVFREVGFDQASMSDIAARSGASKATLYNYFSSKEEMFAEIMS 60 Query: 61 QAGAGAVEELTKVYVEADSARDILQRLGLALLRLVSRPDVIALDRLIIGEARRYPELARI 120 A + E + D L G L + RP +A+ RL I E R L R Sbjct: 61 GTAADEIREAFAQLKSSGPVADTLVVFGEHYLNAILRPSTLAIRRLAICEGDR-SNLGRA 119 Query: 121 FFENGPKRTVAALAEVIARCMDSGKIDARNAELAALHFKAICAGDLIENLMWGTIAQPTK 180 F+E+GPK A LAE + M++G + R+ ++AA H A+ + +E + G + Sbjct: 120 FYEHGPKLGWAMLAEFLREAMEAGALKQRDTDIAAAHLHALYEAECVELCLLGVPLDISP 179 Query: 181 EKLKKISDNAVKVFLDGY 198 ++ + AV VF+ Y Sbjct: 180 GRIAEGVARAVDVFMAAY 197 >mll4816 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti Length = 244 Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 100/192 (52%), Gaps = 1/192 (0%) Query: 8 QRHEFINAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVVQAGAGAV 67 +R + I+ A +FI++G+ A +M I EAG SK T+Y YF++KEELFEA + + Sbjct: 33 KRSQIIDGARRVFIEKGFEAASMNDITREAGVSKGTIYVYFANKEELFEALIEEERGTIF 92 Query: 68 EELTKVYVEADSARDILQRLGLALLRLVSRPDVIALDRLIIGEARRYPELARIFFENGPK 127 + + + AD R L + G L ++ VI R +IG + R P++ F+E GPK Sbjct: 93 KNMYDMLDRADDLRQTLVKFGKVLSMKITSARVIQAQRTVIGASDRIPDMGARFYERGPK 152 Query: 128 RTVAALAEVIARCMDSGKIDARNAELAALHFKAICAGDLIENLMWGTIAQ-PTKEKLKKI 186 R + + + ++ G + + +LAA F +C L ++ + P++E++ I Sbjct: 153 RGHDKVVKFLNAAIERGLLKIDDVDLAAYQFTELCLAGLFRQCIFAYRTKAPSQEEIDHI 212 Query: 187 SDNAVKVFLDGY 198 + V +FL Y Sbjct: 213 VRSGVDMFLKNY 224 >PA3678 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 212 Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 97/183 (53%), Gaps = 7/183 (3%) Query: 2 RVKTVEQRHEFINAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVVQ 61 R K +R + AA LF+ GY +MEAIA+EAG SK+T+Y++F+ KE LF V Sbjct: 12 RPKDPAKREAILEAAKRLFLCNGYDGSSMEAIASEAGVSKLTVYSHFTDKETLFSEAV-- 69 Query: 62 AGAGAVEELTKVY---VEADSARDILQRLGLALLRLVSRPDVIALDRLIIGEARRYPELA 118 A E+L +Y E +L + RL++ + IAL RL+ +A + P+L+ Sbjct: 70 -KAKCAEQLPALYFQLAEGAPLEKVLLNIARGFHRLINSHEAIALTRLMAAQAGQNPKLS 128 Query: 119 RIFFENGPKRTVAALAEVIARCMDSGKIDARNAELAALHFKAICAGDLIENLMWGTIAQP 178 +FFE GPK+ + + ++ + SGK+ +A AA HF + G L+ G A+P Sbjct: 129 ELFFEAGPKQVIDEMERLLEQARRSGKLAFPDARHAAEHFFMLVKGCANYRLLIGC-AEP 187 Query: 179 TKE 181 E Sbjct: 188 LDE 190 >mlr4833 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti Length = 210 Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 104/202 (51%), Gaps = 3/202 (1%) Query: 3 VKTVEQRHEFINAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVVQA 62 ++ + E I AA FI +GY +ME IA +AG SK T+Y +F+ KE LF V+ Sbjct: 7 TRSARKDREIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKHFTDKETLFGEVVLST 66 Query: 63 GAGA---VEELTKVYVEADSARDILQRLGLALLRLVSRPDVIALDRLIIGEARRYPELAR 119 + +E +T + EA LQ+L L+ ++ +++ L RLII A R P+L R Sbjct: 67 ASQVNDIIESVTTLLSEAIFMEGGLQQLARRLIAVLMDEELLKLRRLIIANADRMPQLGR 126 Query: 120 IFFENGPKRTVAALAEVIARCMDSGKIDARNAELAALHFKAICAGDLIENLMWGTIAQPT 179 ++E G +R +A+ A + + G I + LAA H + + M+ + + Sbjct: 127 AWYEKGFERMLASTASCFQKLTNRGLIQTGDPYLAASHLFGMLLWIPMNEAMFTGSNRRS 186 Query: 180 KEKLKKISDNAVKVFLDGYRIR 201 K +L++ +D +V+ FL Y ++ Sbjct: 187 KAELERHADASVEAFLAVYGVQ 208 >BMEII1117 [K] COG1309 Transcriptional regulator Bme Brucella melitensis Length = 247 Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 1/192 (0%) Query: 8 QRHEFINAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVVQAGAGAV 67 +R + + A +F++ G+ A +M I EAG SK T+Y YF+SKE+LF A Sbjct: 53 KRSQILEGAQSVFLRMGFDAASMNDITREAGVSKGTIYVYFNSKEDLFVALCEHYRQTLF 112 Query: 68 EELTKVYVEADSARDILQRLGLALLRLVSRPDVIALDRLIIGEARRYPELARIFFENGPK 127 + S R L G+AL L++ I R+++G + R PELA F+E GPK Sbjct: 113 SSFIGQLEKGFSNRQELIDFGVALTTLITSSIAIRAQRIVVGVSERKPELAARFYERGPK 172 Query: 128 RTVAALAEVIARCMDSGKIDARNAELAALHFKAICAGDLIENLMWGTIAQ-PTKEKLKKI 186 R+ A +A+ + +D+G ++ + A + L ++G +A+ P+++ ++ Sbjct: 173 RSHAIMAQSLQAMIDAGVLEQHDVTRTAYQLSDLFFAGLYRPRLFGALAEAPSEQAIRDN 232 Query: 187 SDNAVKVFLDGY 198 ++AV F Y Sbjct: 233 VESAVDFFFRAY 244 >AGl784 [K] COG1309 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 228 Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 1/192 (0%) Query: 8 QRHEFINAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVVQAGAGAV 67 +R + + A +F +G+ A +M I EAG SK T+Y YFS+KE+LF A V Sbjct: 32 KRDQILAGAWRVFKLKGFDAASMNDITREAGVSKGTIYVYFSNKEDLFAALVDHHRQEFA 91 Query: 68 EELTKVYVEADSARDILQRLGLALLRLVSRPDVIALDRLIIGEARRYPELARIFFENGPK 127 + + + R L++ G A + D+I R +IG R P+LA+ FF P Sbjct: 92 TSMRNILAGTEEVRKGLEQFGKAFANKMICSDMIPAMRSVIGVIDRMPKLAQRFFIAAPN 151 Query: 128 RTVAALAEVIARCMDSGKIDARNAELAALHFKAICAGDLIENLMWGTIAQPT-KEKLKKI 186 L + I + G + + ELAA + + G + ++G I P +E+L ++ Sbjct: 152 NVRTVLQDFIEHHIALGHLKVDDVELAARQYIELSTGTFFKLRLFGEIDGPVPEEELDRV 211 Query: 187 SDNAVKVFLDGY 198 +A+KVF+ Y Sbjct: 212 IASAIKVFMAAY 223 >CC0919 [K] COG1309 Transcriptional regulator Ccr Caulobacter vibrioides Length = 206 Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 94/199 (47%), Gaps = 2/199 (1%) Query: 4 KTVEQRHEFINAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVVQAG 63 ++ +R E + +A F+++GYA MEAIA AG S TLY YF SK LF V++ Sbjct: 9 RSGHKREEILGSARAHFLREGYADTGMEAIARAAGISTATLYAYFPSKAHLFRTIVMETV 68 Query: 64 AGAVEELTKVYVEADSARDILQRLGLALLRLVSRPDVIALDRLIIGEARRYPELARIFFE 123 +G + + AR L L A SRPD A+ R+ E RR+PE+A F + Sbjct: 69 SGIAAPVREAVRVKGHARARLIALSTAYATFFSRPDTRAMFRMATTERRRFPEVADYFLQ 128 Query: 124 NGPKRTVAALAEVIARCMDSGKIDARNAELAALHFKAICAG-DLIENLMWGTIAQPTKEK 182 + A VI + +G++ AA + L+ L G Q ++ Sbjct: 129 SARDELGGAAIAVINDLVKTGELKVDKPSWAAGQLLGMLDHVTLVLGLAAGDDVQ-SRRS 187 Query: 183 LKKISDNAVKVFLDGYRIR 201 ++ I+D+AV+ FL Y R Sbjct: 188 VRSIADDAVETFLARYGAR 206 >RSp0443 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum Length = 209 Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 96/203 (47%), Gaps = 2/203 (0%) Query: 2 RVKTVEQRHEFINAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVVQ 61 R + ++ + AA +F+ G++A T + I A SK T+Y F +KE +F A + + Sbjct: 6 RTEQNDKETSVLKAATAVFLAHGFSAATTDMIQRRASVSKATMYACFPNKEAMFAAVIER 65 Query: 62 AGAGAVEELTKVYVEADSARDILQRLGLALLRLVSRPDVIALDRLIIGEARRYPELARIF 121 A E + + L +GL+ LR V P +AL R+++ EA R+P+LAR F Sbjct: 66 ECAVMAETIRAIQTAPGDIARTLTDIGLSYLRFVVAPTALALYRVVVAEAPRFPDLARRF 125 Query: 122 FENGPKRTVAALAEVIARCMDSGKID--ARNAELAALHFKAICAGDLIENLMWGTIAQPT 179 + GPK + +A + G+I+ A E AA F ++ + + AQP+ Sbjct: 126 YLAGPKVVTSMVAARLKEAAQDGEINIQAVGVEAAATLFISLVRTEGQLESLTHPDAQPS 185 Query: 180 KEKLKKISDNAVKVFLDGYRIRR 202 +L AV F+ + + R Sbjct: 186 AAQLDHWVQLAVTTFMAAFGVPR 208 >SMc03169 [K] COG1309 Transcriptional regulator Sme Sinorhizobium meliloti Length = 236 Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 91/191 (47%) Query: 8 QRHEFINAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVVQAGAGAV 67 +R ++ A +F++ + A +M I EAG SK TLY YF +KE+LF A + + V Sbjct: 39 KRERILDGAKRVFMRSSFDAASMNDITREAGVSKGTLYVYFENKEDLFTALIARERNIIV 98 Query: 68 EELTKVYVEADSARDILQRLGLALLRLVSRPDVIALDRLIIGEARRYPELARIFFENGPK 127 + + + + L G+ L+ ++ I R ++G R P LA+ FF P+ Sbjct: 99 NSVKQSLNGNEPIEEALHAFGVKLVTSITSDYTIRAMRTVLGVIDRMPRLAQRFFTATPE 158 Query: 128 RTVAALAEVIARCMDSGKIDARNAELAALHFKAICAGDLIENLMWGTIAQPTKEKLKKIS 187 L + + + +G + + E+AA F + + + ++G + E ++K Sbjct: 159 NGYTVLKAYLDQQVSAGMLSIEDTEIAAKQFIDLAMAGMFKGRLFGMCDAVSAESIEKNV 218 Query: 188 DNAVKVFLDGY 198 +A++VFL Y Sbjct: 219 RSAIRVFLAAY 229