BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0095.p (436 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl3050 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 365 e-100 PA5304 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) P... 363 e-100 dadA [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Eco... 361 2e-99 ZdadA [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Ec... 361 2e-99 ECs1684 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 361 2e-99 BMEII0373 [E] COG0665 Glycine/D-amino acid oxidases (deaminating... 352 1e-96 YPO2147 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 352 1e-96 STM1803 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 348 1e-95 NMA0092 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 330 3e-90 mll3992 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 329 8e-90 >AGl3050 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 418 Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust. Identities = 184/425 (43%), Positives = 252/425 (59%), Gaps = 9/425 (2%) Query: 1 MKVIVLGAGIIGTASAWFLKKQGYDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPAA 60 M V +LGAG++G SAW+L K G+ VTVIDRQP AA ETSFAN ++S ++ PWA P Sbjct: 1 MNVTILGAGVVGVTSAWYLAKAGHKVTVIDRQPAAALETSFANAGEVSPGYSSPWAAPGI 60 Query: 61 PMKVLKWLGKEDAPLLYRFRPEWLQWKWAVAFLRECTAARTDENIRNIVALCEYSRQTLQ 120 PMK +KWL + APL+ R + W+W LR CT+AR N +V + EYSR L Sbjct: 61 PMKAMKWLFMKHAPLIIRPTADPAAWRWMSQMLRNCTSARYAINKSRMVRVAEYSRDCLM 120 Query: 121 AVRAETGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALA 180 A+R ETGI YD +G L + +K+F ++ G P E + D IEP LA Sbjct: 121 ALREETGIDYDQRMQGTLEVFRTQKQFDAIGKDVDVLTAGGVPFEILDRDGCAAIEPGLA 180 Query: 181 SIRNKIVGGDFTATDESGDVFKLTTGLAKKSAEAGVEFRYSTTITRLITEGAGAAARVTG 240 + KIVGG DE+GD F TT LA+ + EAGV F Y T I R I EG R+ Sbjct: 181 PAKEKIVGGLRLPGDETGDCFMFTTELARMAEEAGVTFLYDTGIMRPIVEGG----RIKA 236 Query: 241 VEIINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTV 300 VE +++AD FV A+GS+S Q V+ LG+ L +YP KGYS T I + AP Sbjct: 237 VETT-----RGLIEADIFVAALGSYSPQFVRQLGLTLPVYPVKGYSITVPIVKEERAPVS 291 Query: 301 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTY 360 ++ D+ +K+ ++RLG R+R G E+ G++++L R E + +LF D + Sbjct: 292 TVMDETFKVAITRLGSRIRAGGMAEIAGFSKDLPAARQETLAHSVEDLFGGAGDQSQAKF 351 Query: 361 WTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVAGHVPEIDFAFT 420 W GLRP+TP P +G T+++NLYLNTGHGTLGWTM CGS R +A++++G+ PEID Sbjct: 352 WCGLRPMTPDGTPVIGATRYSNLYLNTGHGTLGWTMSCGSARVLADLISGNKPEIDTHDL 411 Query: 421 GLPRW 425 + R+ Sbjct: 412 AISRY 416 >PA5304 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Pae Pseudomonas aeruginosa Length = 432 Score = 363 bits (933), Expect = e-100, Method: Compositional matrix adjust. Identities = 186/428 (43%), Positives = 263/428 (61%), Gaps = 9/428 (2%) Query: 1 MKVIVLGAGIIGTASAWFLKKQGYDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPAA 60 M+V+VLG+G+IGTASA++L + G++V V+DRQ G A ETSFAN Q+S +A PWA P Sbjct: 1 MRVLVLGSGVIGTASAYYLARAGFEVVVVDRQDGPALETSFANAGQVSPGYASPWAAPGI 60 Query: 61 PMKVLKWLGKEDAPLLYRFRPEWLQWKWAVAFLRECTAARTDENIRNIVALCEYSRQTLQ 120 P+K +KWL ++ APL + + Q+ W + LR CTA R N +V L EYSR L Sbjct: 61 PLKAMKWLLEKHAPLAIKLTSDPSQYAWMLQMLRNCTAERYAVNKERMVRLSEYSRDCLD 120 Query: 121 AVRAETGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALA 180 +RAETGI Y+ T G + + + + ++ G P E + D + R+EPALA Sbjct: 121 ELRAETGIAYEGRTLGTTQLFRTQAQLDAAGKDIAVLERSGVPYEVLDRDGIARVEPALA 180 Query: 181 SIRNKIVGGDFTATDESGDVFKLTTGLAKKSAEAGVEFRYSTTITRLITEGAGAAARVTG 240 + +K+VG D++GD TT LA+ + GVEFR+ I RL G R+ G Sbjct: 181 KVADKLVGALRLPNDQTGDCQLFTTRLAEMAKGLGVEFRFGQNIERLDFAG----DRING 236 Query: 241 VEIINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTV 300 V ++N E+L AD +V+A+GS+S QL+KPLGI +YP KGYS T ITNP+ APT Sbjct: 237 V-LVN----GELLTADHYVLALGSYSPQLLKPLGIKAPVYPLKGYSLTVPITNPEMAPTS 291 Query: 301 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTY 360 ++ D+ YK+ ++R R+RV G E+ G+ LN R E + T +L+P+G D T+ Sbjct: 292 TILDETYKVAITRFDQRIRVGGMAEIAGFDLSLNPRRRETLEMITTDLYPEGGDISQATF 351 Query: 361 WTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVAGHVPEIDFAFT 420 WTGLRP TP P VG T++ NL+LNTGHGTLGWTM CGSGR +A+++A P+I Sbjct: 352 WTGLRPATPDGTPIVGATRYRNLFLNTGHGTLGWTMACGSGRYLADLMAKKRPQISTEGL 411 Query: 421 GLPRWNRA 428 + R++ + Sbjct: 412 DISRYSNS 419 >dadA [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Eco Escherichia coli K12 Length = 432 Score = 361 bits (926), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 176/427 (41%), Positives = 268/427 (62%), Gaps = 10/427 (2%) Query: 1 MKVIVLGAGIIGTASAWFLKKQGYDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPAA 60 M+V++LG+G++G ASAW+L + G++VTVIDR+PGAA ETS AN QIS +A PWA P Sbjct: 1 MRVVILGSGVVGVASAWYLNQAGHEVTVIDREPGAALETSAANAGQISPGYAAPWAAPGV 60 Query: 61 PMKVLKWLGKEDAPLLYRFRPEWLQWKWAVAFLRECTAARTDENIRNIVALCEYSRQTLQ 120 P+K +KW+ + APL R Q KW LR C + EN +V L EYSR L+ Sbjct: 61 PLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYMENKGRMVRLAEYSRDCLK 120 Query: 121 AVRAETGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALA 180 A+RAET IQY+ G L + E++++++ ++ D G P + + + + +EPALA Sbjct: 121 ALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIAVLEDAGVPYQLLESSRLAEVEPALA 180 Query: 181 SIRNKIVGGDFTATDESGDVFKLTTGLAKKSAEAGVEFRYSTTITRLITEGAGAAARVTG 240 + +K+ GG DE+GD T LA+ + +AGV+FR++T + +L+ +G ++ G Sbjct: 181 EVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKFRFNTPVDQLLCDG----EQIYG 236 Query: 241 VEIINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTV 300 V+ + EV+KAD +V+A GS+S ++K + +D+ +YP KGYS T I D AP Sbjct: 237 VKCGD-----EVIKADAYVMAFGSYSTAMLKGI-VDIPVYPLKGYSLTIPIAQEDGAPVS 290 Query: 301 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTY 360 ++ D+ YK+ ++R +R+RV G E+ G+ EL R E + R+L+P G E T+ Sbjct: 291 TILDETYKIAITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMVVRDLYPRGGHVEQATF 350 Query: 361 WTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVAGHVPEIDFAFT 420 WTGLRP+TP P VG+T+F NL+LNTGHGTLGWTM CGSG+ ++++++G P I + Sbjct: 351 WTGLRPMTPDGTPVVGRTRFKNLWLNTGHGTLGWTMACGSGQLLSDLLSGRTPAIPYEDL 410 Query: 421 GLPRWNR 427 + R++R Sbjct: 411 SVARYSR 417 >ZdadA [E] COG0665 Glycine/D-amino acid oxidases (deaminating) EcZ Escherichia coli O157:H7 EDL933 Length = 432 Score = 361 bits (926), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 176/427 (41%), Positives = 268/427 (62%), Gaps = 10/427 (2%) Query: 1 MKVIVLGAGIIGTASAWFLKKQGYDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPAA 60 M+V++LG+G++G ASAW+L + G++VTVIDR+PGAA ETS AN QIS +A PWA P Sbjct: 1 MRVVILGSGVVGVASAWYLNQAGHEVTVIDREPGAALETSAANAGQISPGYAAPWAAPGV 60 Query: 61 PMKVLKWLGKEDAPLLYRFRPEWLQWKWAVAFLRECTAARTDENIRNIVALCEYSRQTLQ 120 P+K +KW+ + APL R Q KW LR C + EN +V L EYSR L+ Sbjct: 61 PLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYMENKGRMVRLAEYSRDCLK 120 Query: 121 AVRAETGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALA 180 A+RAET IQY+ G L + E++++++ ++ D G P + + + + +EPALA Sbjct: 121 ALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIAVLEDAGVPYQLLESSRLAEVEPALA 180 Query: 181 SIRNKIVGGDFTATDESGDVFKLTTGLAKKSAEAGVEFRYSTTITRLITEGAGAAARVTG 240 + +K+ GG DE+GD T LA+ + +AGV+FR++T + +L+ +G ++ G Sbjct: 181 EVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKFRFNTPVDQLLCDG----EQIYG 236 Query: 241 VEIINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTV 300 V+ + EV+KAD +V+A GS+S ++K + +D+ +YP KGYS T I D AP Sbjct: 237 VKCGD-----EVIKADAYVMAFGSYSTAMLKGI-VDIPVYPLKGYSLTIPIAQEDGAPVS 290 Query: 301 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTY 360 ++ D+ YK+ ++R +R+RV G E+ G+ EL R E + R+L+P G E T+ Sbjct: 291 TILDETYKIAITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMVVRDLYPRGGHVEQATF 350 Query: 361 WTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVAGHVPEIDFAFT 420 WTGLRP+TP P VG+T+F NL+LNTGHGTLGWTM CGSG+ ++++++G P I + Sbjct: 351 WTGLRPMTPDGTPVVGRTRFKNLWLNTGHGTLGWTMACGSGQLLSDLLSGRTPAIPYEDL 410 Query: 421 GLPRWNR 427 + R++R Sbjct: 411 SVARYSR 417 >ECs1684 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Ecs Escherichia coli O157:H7 Length = 432 Score = 361 bits (926), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 176/427 (41%), Positives = 268/427 (62%), Gaps = 10/427 (2%) Query: 1 MKVIVLGAGIIGTASAWFLKKQGYDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPAA 60 M+V++LG+G++G ASAW+L + G++VTVIDR+PGAA ETS AN QIS +A PWA P Sbjct: 1 MRVVILGSGVVGVASAWYLNQAGHEVTVIDREPGAALETSAANAGQISPGYAAPWAAPGV 60 Query: 61 PMKVLKWLGKEDAPLLYRFRPEWLQWKWAVAFLRECTAARTDENIRNIVALCEYSRQTLQ 120 P+K +KW+ + APL R Q KW LR C + EN +V L EYSR L+ Sbjct: 61 PLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYMENKGRMVRLAEYSRDCLK 120 Query: 121 AVRAETGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALA 180 A+RAET IQY+ G L + E++++++ ++ D G P + + + + +EPALA Sbjct: 121 ALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIAVLEDAGVPYQLLESSRLAEVEPALA 180 Query: 181 SIRNKIVGGDFTATDESGDVFKLTTGLAKKSAEAGVEFRYSTTITRLITEGAGAAARVTG 240 + +K+ GG DE+GD T LA+ + +AGV+FR++T + +L+ +G ++ G Sbjct: 181 EVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKFRFNTPVDQLLCDG----EQIYG 236 Query: 241 VEIINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTV 300 V+ + EV+KAD +V+A GS+S ++K + +D+ +YP KGYS T I D AP Sbjct: 237 VKCGD-----EVIKADAYVMAFGSYSTAMLKGI-VDIPVYPLKGYSLTIPIAQEDGAPVS 290 Query: 301 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTY 360 ++ D+ YK+ ++R +R+RV G E+ G+ EL R E + R+L+P G E T+ Sbjct: 291 TILDETYKIAITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMVVRDLYPRGGHVEQATF 350 Query: 361 WTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVAGHVPEIDFAFT 420 WTGLRP+TP P VG+T+F NL+LNTGHGTLGWTM CGSG+ ++++++G P I + Sbjct: 351 WTGLRPMTPDGTPVVGRTRFKNLWLNTGHGTLGWTMACGSGQLLSDLLSGRTPAIPYEDL 410 Query: 421 GLPRWNR 427 + R++R Sbjct: 411 SVARYSR 417 >BMEII0373 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Bme Brucella melitensis Length = 416 Score = 352 bits (902), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 172/426 (40%), Positives = 264/426 (61%), Gaps = 10/426 (2%) Query: 1 MKVIVLGAGIIGTASAWFLKKQGYDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPAA 60 M++ +LG+G+IG +A++L K G++VTVIDR+ G A ETSFAN Q+S +A PWA P Sbjct: 1 MQITILGSGVIGVTTAYYLAKLGHEVTVIDREEGPALETSFANAGQVSPGYASPWAAPGI 60 Query: 61 PMKVLKWLGKEDAPLLYRFRPEWLQWKWAVAFLRECTAARTDENIRNIVALCEYSRQTLQ 120 P+K KWL ++ APL+ R + +Q++W + L CT +R N +V + EYSR L Sbjct: 61 PLKAAKWLFQKHAPLILRLTTDPVQYRWLLQMLANCTDSRYKINKTRMVRVAEYSRDCLI 120 Query: 121 AVRAETGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALA 180 +R +TGI+YD ++G L + E+ + +++R G P E + D V +EPALA Sbjct: 121 ELRKDTGIEYDQRSQGTLQLFREQYQLDGIGKDIEVLRQDGVPFEVLDRDGCVNVEPALA 180 Query: 181 SIRNKIVGGDFTATDESGDVFKLTTGLAKKSAEAGVEFRYSTTITRLITEGAGAAARVTG 240 ++K VGG DE+GD FK T LAK + GV+FR+ I L+ G +++G Sbjct: 181 HAKDKFVGGLRLPNDETGDCFKFTNALAKIAEGLGVKFRFGVNIKSLLMSG----GKISG 236 Query: 241 VEIINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTV 300 VE ++ A+ +VVA+GS++ L+K LG++ +YP KGYS T I + AP Sbjct: 237 VET-----SEGIVTAERYVVALGSYTPALIKALGLNAPIYPVKGYSITAPIVDESRAPVS 291 Query: 301 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTY 360 ++ D+ YK+ ++RLGDR+RV G E++G+T +L R + +LFP G D + T+ Sbjct: 292 TVLDESYKIAITRLGDRIRVGGMAEVSGFTDDLPAARRATLDLSVTDLFPGG-DLKAATF 350 Query: 361 WTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVAGHVPEIDFAFT 420 W+GLRP+TP + P +G T++ NL++N GHGTLGWTM CGSGR +A++++G+ +I Sbjct: 351 WSGLRPMTPDSTPIIGGTRYDNLFINAGHGTLGWTMACGSGRLLADLISGNKADIRADDL 410 Query: 421 GLPRWN 426 G+ R+N Sbjct: 411 GIARYN 416 >YPO2147 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Ype Yersinia pestis Length = 434 Score = 352 bits (902), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 175/415 (42%), Positives = 252/415 (60%), Gaps = 10/415 (2%) Query: 1 MKVIVLGAGIIGTASAWFLKKQGYDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPAA 60 M+V++LG+G++G SAW+L K+G+DVTVIDRQ G AQETS N QIS +A PWA P Sbjct: 1 MRVVILGSGVVGVTSAWYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGV 60 Query: 61 PMKVLKWLGKEDAPLLYRFRPEWLQWKWAVAFLRECTAARTDENIRNIVALCEYSRQTLQ 120 P+K +KW+ + APL R LQ +W LR C + N +V L EYSR L+ Sbjct: 61 PLKAIKWMFQRHAPLAIRLDGSSLQLRWMWQMLRNCDTSHYMVNKSRMVRLAEYSRDCLK 120 Query: 121 AVRAETGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALA 180 +RA TGIQY+ G L + E++F ++ ++ D G P + A+++ +EPALA Sbjct: 121 DLRAATGIQYEGRQGGTLQLFRTEQQFDNAAKDIAVLDDAGVPYSLLTAEQLATVEPALA 180 Query: 181 SIRNKIVGGDFTATDESGDVFKLTTGLAKKSAEAGVEFRYSTTITRLITEGAGAAARVTG 240 + +K+ GG DE+GD T LAK + +AGV+F ++ ++ +L+ EG A + G Sbjct: 181 KVAHKLTGGLRLPNDETGDCKLFTERLAKMAEQAGVKFIFNRSVDKLLVEGDQIAGVLCG 240 Query: 241 VEIINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTV 300 +II KAD +VVA G++S L+ L + + +YP KGYS T IT+P +AP Sbjct: 241 DDII---------KADAYVVAFGAYSTALLAGL-VSIPVYPLKGYSLTIPITDPASAPFS 290 Query: 301 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTY 360 ++ D+ YK+ ++R DR+RV G E+ G+ +L R E + R+L+P G D + Sbjct: 291 TVLDETYKIAITRFDDRIRVGGMAEIVGFNTQLAPARRETLEMVVRDLYPHGGDISQAVF 350 Query: 361 WTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVAGHVPEI 415 W+GLRP+TP P VG+T NLYLNTGHGTLGWTM CGSG+ +A+I+ G P I Sbjct: 351 WSGLRPMTPDGTPIVGRTPLKNLYLNTGHGTLGWTMACGSGQLLADIIQGRRPAI 405 >STM1803 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Sty Salmonella typhimurium LT2 Length = 432 Score = 348 bits (893), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 171/425 (40%), Positives = 259/425 (60%), Gaps = 10/425 (2%) Query: 1 MKVIVLGAGIIGTASAWFLKKQGYDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPAA 60 M+V++LG+G++G SAW+L + G+DVTVIDR+ G AQETS AN QIS +A PWA P Sbjct: 1 MRVVILGSGVVGVTSAWYLSQAGHDVTVIDRESGPAQETSAANAGQISPGYAAPWAAPGV 60 Query: 61 PMKVLKWLGKEDAPLLYRFRPEWLQWKWAVAFLRECTAARTDENIRNIVALCEYSRQTLQ 120 P+K +KW+ + APL R Q KW LR C EN +V L EYSR L+ Sbjct: 61 PLKAIKWMFQRHAPLAVRLDGTPFQLKWMWQMLRNCDTRHYMENKGRMVRLAEYSRDCLK 120 Query: 121 AVRAETGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALA 180 +RA TGI+Y+ G L + ++++++ ++ D G P + + + + +EPALA Sbjct: 121 TLRAATGIEYEGRQGGTLQLFRTAQQYENATRDIAVLEDAGVPYQLLESSRLAEVEPALA 180 Query: 181 SIRNKIVGGDFTATDESGDVFKLTTGLAKKSAEAGVEFRYSTTITRLITEGAGAAARVTG 240 + +K+ GG DE+GD T LA+ + +AGV FR++T + +L+ E ++ G Sbjct: 181 EVAHKLTGGLRLPNDETGDCQLFTQRLARMAEQAGVTFRFNTPVEKLLYEN----DQIYG 236 Query: 241 VEIINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTV 300 V+ + E++KAD +V+A GS+S ++K + +D+ +YP KGYS T I PD AP Sbjct: 237 VKCAD-----EIIKADAYVMAFGSYSTAMLKGI-VDIPVYPLKGYSLTIPIVEPDGAPVS 290 Query: 301 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTY 360 ++ D+ YK+ ++R R+RV G E+ G+ +L R E + R+LFP G E T+ Sbjct: 291 TILDETYKIAITRFDKRIRVGGMAEIVGFNTDLLQPRRETLEMVVRDLFPRGGHIEQATF 350 Query: 361 WTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVAGHVPEIDFAFT 420 WTGLRP+TP P VG+T++ NL+LNTGHGTLGWTM CGSG+ +++I++G P I + Sbjct: 351 WTGLRPMTPDGTPVVGRTRYKNLWLNTGHGTLGWTMACGSGQLLSDILSGRTPAIPYDDL 410 Query: 421 GLPRW 425 + R+ Sbjct: 411 SVARY 415 >NMA0092 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) NmA Neisseria meningitidis Z2491 Length = 418 Score = 330 bits (846), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 173/426 (40%), Positives = 243/426 (57%), Gaps = 9/426 (2%) Query: 1 MKVIVLGAGIIGTASAWFLKKQGYDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPAA 60 MKV+VLGAG+ G +SAW+L + G++VTVIDR G A ETSFAN Q+S + PWA P Sbjct: 1 MKVLVLGAGVAGVSSAWYLAEAGHEVTVIDRAEGVAMETSFANAGQLSYGYTTPWAAPGI 60 Query: 61 PMKVLKWLGKEDAPLLYRFRPEWLQWKWAVAFLRECTAARTDENIRNIVALCEYSRQTLQ 120 P K LKWL K PLL+R Q +W L+ CTAAR N +V + EYSR+ + Sbjct: 61 PTKALKWLFKSHPPLLFRPDGSLYQIEWLWQMLQHCTAARYQINKERMVRMSEYSREMFR 120 Query: 121 AVRAETGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPALA 180 A+TG+ ++ +G L + + KE + + ++ G P + +E EPALA Sbjct: 121 RFEAQTGMNFEGRKKGTLQIFRQTKEVEAAKQDIAVLERYGVPYRRLKPEECAEFEPALA 180 Query: 181 SIRNKIVGGDFTATDESGDVFKLTTGLAKKSAEAGVEFRYSTTITRLITEGAGAAARVTG 240 + KI GG D +GD T L K E GV F ++ TI+R+ G R+ Sbjct: 181 RVTAKIAGGLHLPADATGDCRLFTENLYKLCQEKGVRFHFNQTISRIDHNG----LRIKT 236 Query: 241 VEIINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAPTV 300 VE GR E AD V A+G FS+ ++ + ++L +YP KGYS T +TN D AP Sbjct: 237 VE--TETGRFE---ADAVVCALGCFSRTVLAQVDLNLPIYPVKGYSLTLPVTNSDGAPVS 291 Query: 301 SLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENPTY 360 ++ D+ YK+ ++R +R+RV G EL+GY +L R E + +LFP+G D + Sbjct: 292 TVLDESYKVAITRFNNRIRVGGMAELSGYAIKLPEKRRETLALVVNDLFPEGGDLNQTLF 351 Query: 361 WTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVAGHVPEIDFAFT 420 W+GLRP+TP + P +G+T+F NL+LNTGHGTLGWTM GS + A+IV+G EI Sbjct: 352 WSGLRPMTPDSTPLIGRTRFDNLFLNTGHGTLGWTMSLGSAKLTADIVSGKDTEIRSDDL 411 Query: 421 GLPRWN 426 L R+ Sbjct: 412 SLSRYQ 417 >mll3992 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Mlo Mesorhizobium loti Length = 418 Score = 329 bits (843), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 167/418 (39%), Positives = 244/418 (58%), Gaps = 13/418 (3%) Query: 1 MKVIVLGAGIIGTASAWFLKKQGYDVTVIDRQPGAAQETSFANGCQISVSHAEPWANPAA 60 M+++VLG G+IG +A++L + G++VTV+DRQ G A ETSFAN +IS +A PWA P Sbjct: 1 MQIMVLGGGVIGVTTAYYLAEAGHEVTVLDRQKGPALETSFANAGEISPGYASPWAGPGI 60 Query: 61 PMKVLKWLGKEDAPLLYR--FRPEWLQWKWAVAFLRECTAARTDENIRNIVALCEYSRQT 118 P+K +KWL + PL+ R F P W W V LR CT R N +V L EYSR T Sbjct: 61 PLKAIKWLLMKHGPLVVRPAFDPH--MWTWLVKMLRNCTTERYAINKSRMVPLAEYSRDT 118 Query: 119 LQAVRAETGIQYDHLTRGILHFYTEEKEFQDSLPAAKLMRDLGCPRESIGADEVVRIEPA 178 L+A+R TGI YD T+G L + +K+ + ++++ G E + D + EPA Sbjct: 119 LKALREATGITYDERTQGTLQLFRTQKQLDGTGGDVEVLKKYGVSYEILDQDGCIAAEPA 178 Query: 179 LASIRNKIVGGDFTATDESGDVFKLTTGLAKKSAEAGVEFRYSTTITRLITEGAGAAARV 238 L +R K VGG DE+GD T LA+ GV+F Y TTI R++ Sbjct: 179 LGGVREKFVGGLRLPHDETGDCKMFTEKLAELCVARGVKFEYDTTIWRVLR--------- 229 Query: 239 TGVEIINPDGRHEVLKADTFVVAMGSFSQQLVKPLGIDLLLYPGKGYSATYQITNPDAAP 298 + + N ++ +V+A+GS+S ++ + + +YP KGYS T I + D AP Sbjct: 230 SRNRVANLSTSKGFKASEAYVMALGSYSAGFMRRMKRSIPVYPVKGYSITVPIKDADVAP 289 Query: 299 TVSLTDDGYKLVVSRLGDRLRVAGTCELNGYTRELNTTRCEAITRRTRELFPDGCDYENP 358 ++ D+ YK+ ++RLGDR+RV GT E++G+ L+ +R + +LFP Sbjct: 290 VSTVMDETYKVAITRLGDRIRVGGTAEISGFDLRLHESRRRTLEHSVGDLFPGAGAMREA 349 Query: 359 TYWTGLRPLTPSNVPYVGKTKFANLYLNTGHGTLGWTMGCGSGRAIAEIVAGHVPEID 416 T+W GLRP+TP P +G+T+ +NL+LNTGHGTLGWTM CGS + +A+I++ VPEID Sbjct: 350 TFWCGLRPMTPDGPPLIGRTELSNLFLNTGHGTLGWTMACGSAKVLADIMSNKVPEID 407