BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0082.p (233 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ZyecA [R] COG3318 Predicted metal-binding protein related to the... 124 2e-28 ECs2616 [R] COG3318 Predicted metal-binding protein related to t... 124 2e-28 yecA [R] COG3318 Predicted metal-binding protein related to the ... 122 8e-28 STM1938 [R] COG3318 Predicted metal-binding protein related to t... 114 2e-25 NMB1071 [R] COG3318 Predicted metal-binding protein related to t... 92 1e-18 NMA1272 [R] COG3318 Predicted metal-binding protein related to t... 91 2e-18 XF0806 [U] COG0653 Preprotein translocase subunit SecA (ATPase, ... 60 3e-09 >ZyecA [R] COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA EcZ Escherichia coli O157:H7 EDL933 Length = 221 Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 118/221 (53%), Gaps = 7/221 (3%) Query: 6 PLSDAEFDELDDFLLSDRCADDVMTMDTLHGYLTALAIGPQEVLMAEWLPRVWGSRPEDT 65 PL+++E + LDD L ++ + L G LTA+ PQE+ A+WL VWG + Sbjct: 5 PLNESELEWLDDILTKYNTDHAILDVAELDGLLTAVLSSPQEIEPAQWLVAVWGGA-DYV 63 Query: 66 PKFKNGKEAERITSLIARSMNEIAITFEVAPKEYEPLFCEREHEGKPLLDAEAWAWGFWE 125 P++ + KE R +L + M + A P+++EPLF RE +G L E W +G+ Sbjct: 64 PRWASEKEMTRFMNLAFQHMADTAERLNEFPEQFEPLFGLREVDGSELTIVEEWCFGYMR 123 Query: 126 GIQLRAEQWDEIFHSNLAPLMRPIYLLGSDELEEEETKLIDDPIKTHKLAIEIEAAIPHI 185 G+ L W + S L P + I L G++E E K+ + + AI + A + Sbjct: 124 GVALS--DWSTLPDS-LKPALEAIALHGTEENFERVEKMSPEAFEESVDAIRLAAL--DL 178 Query: 186 HRYW-APKRKSAVEQVQRDAPKTGRNDPCPCGSGKKYKKCC 225 H YW A ++ AV+Q + K GRNDPCPCGSGKK+K+CC Sbjct: 179 HAYWMAHPQEKAVQQPIKAEEKPGRNDPCPCGSGKKFKQCC 219 >ECs2616 [R] COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA Ecs Escherichia coli O157:H7 Length = 221 Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 118/221 (53%), Gaps = 7/221 (3%) Query: 6 PLSDAEFDELDDFLLSDRCADDVMTMDTLHGYLTALAIGPQEVLMAEWLPRVWGSRPEDT 65 PL+++E + LDD L ++ + L G LTA+ PQE+ A+WL VWG + Sbjct: 5 PLNESELEWLDDILTKYNTDHAILDVAELDGLLTAVLSSPQEIEPAQWLVAVWGGA-DYV 63 Query: 66 PKFKNGKEAERITSLIARSMNEIAITFEVAPKEYEPLFCEREHEGKPLLDAEAWAWGFWE 125 P++ + KE R +L + M + A P+++EPLF RE +G L E W +G+ Sbjct: 64 PRWASEKEMTRFMNLAFQHMADTAERLNEFPEQFEPLFGLREVDGSELTIVEEWCFGYMR 123 Query: 126 GIQLRAEQWDEIFHSNLAPLMRPIYLLGSDELEEEETKLIDDPIKTHKLAIEIEAAIPHI 185 G+ L W + S L P + I L G++E E K+ + + AI + A + Sbjct: 124 GVALS--DWSTLPDS-LKPALEAIALHGTEENFERVEKMSPEAFEESVDAIRLAAL--DL 178 Query: 186 HRYW-APKRKSAVEQVQRDAPKTGRNDPCPCGSGKKYKKCC 225 H YW A ++ AV+Q + K GRNDPCPCGSGKK+K+CC Sbjct: 179 HAYWMAHPQEKAVQQPIKAEEKPGRNDPCPCGSGKKFKQCC 219 >yecA [R] COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA Eco Escherichia coli K12 Length = 221 Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 7/221 (3%) Query: 6 PLSDAEFDELDDFLLSDRCADDVMTMDTLHGYLTALAIGPQEVLMAEWLPRVWGSRPEDT 65 PL+++E + LDD L ++ + L G LTA+ PQE+ +WL VWG + Sbjct: 5 PLNESELEWLDDILTKYNTDHAILDVAELDGLLTAVLSSPQEIEPEQWLVAVWGGA-DYV 63 Query: 66 PKFKNGKEAERITSLIARSMNEIAITFEVAPKEYEPLFCEREHEGKPLLDAEAWAWGFWE 125 P++ + KE R +L + M + A P+++EPLF RE +G L E W +G+ Sbjct: 64 PRWASEKEMTRFMNLAFQHMADTAERLNEFPEQFEPLFGLREVDGSELTIVEEWCFGYMR 123 Query: 126 GIQLRAEQWDEIFHSNLAPLMRPIYLLGSDELEEEETKLIDDPIKTHKLAIEIEAAIPHI 185 G+ L W + S L P + I L G++E E K+ + + AI + A + Sbjct: 124 GVALS--DWSTLPDS-LKPALEAIALHGTEENFERVEKMSPEAFEESVDAIRLAAL--DL 178 Query: 186 HRYW-APKRKSAVEQVQRDAPKTGRNDPCPCGSGKKYKKCC 225 H YW A ++ AV+Q + K GRNDPCPCGSGKK+K+CC Sbjct: 179 HAYWMAHPQEKAVQQPIKAEEKPGRNDPCPCGSGKKFKQCC 219 >STM1938 [R] COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA Sty Salmonella typhimurium LT2 Length = 221 Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 112/224 (50%), Gaps = 11/224 (4%) Query: 5 QPLSDAEFDELDDFLLSDRCADDVMTMDTLHGYLTALAIGPQEVLMAEWLPRVWGSRPED 64 +PL++ E + LDD L ++ + L G +TA+ P+ + +WL +WG P Sbjct: 4 EPLNENELEWLDDVLTKYNTDQAILDVAELDGLITAVLSSPRPIDPEQWLVAIWGG-PAY 62 Query: 65 TPKFKNGKEAERITSLIARSMNEIAITFEVAPKEYEPLFCEREHEGKPLLDAEAWAWGFW 124 P++ + KE R L+ + M + A E P+++EPLF RE +G L E W +G+ Sbjct: 63 VPRWTSEKEMTRFMDLVFQHMADTAARLEDYPEQFEPLFGLREVDGHELTIVEEWCFGYM 122 Query: 125 EGIQLRAEQWDEIFHSNLAPLMRPIYLLGSDELEEEETKLID--DPIKTHKLAIEIEAAI 182 G+ L W ++ L P + I L G+ EE L+D P K I A Sbjct: 123 RGVSL--SDWSDL-PDTLKPALEAIALHGT----EENFALLDKMSPEAFDKSVDAIRIAA 175 Query: 183 PHIHRYW-APKRKSAVEQVQRDAPKTGRNDPCPCGSGKKYKKCC 225 +H +W A + ++ + K GRNDPCPCGSGKK+K+CC Sbjct: 176 LELHAWWMAHPHTTPLQMPIKAEVKVGRNDPCPCGSGKKFKQCC 219 >NMB1071 [R] COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA Nme Neisseria meningitidis MC58 Length = 220 Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 101/211 (47%), Gaps = 25/211 (11%) Query: 27 DVMTMDTLHGYLTALAIGPQEVLMAEWLPRVWGSRPEDTPKFKNGKEAERITSLIARSMN 86 + M D + G++TAL GP ++ +WLP V G D +F + +E ++A +M Sbjct: 26 NTMRCDEVQGFMTALLSGPDKLTPLDWLPEVLG----DESQFTAAERSEIERLVLAMAME 81 Query: 87 EIAITFEVAPKEYEPLFCEREHEGKPLLDAEAWAWGFWEGIQLRAEQW-----DEIFHSN 141 A ++ K+ L+ +G D W + G+ + W DE F Sbjct: 82 TTAA---MSDKKLPDLWLYENEDGGS--DFYTWCNAYLYGLDIVPTDWFEAVDDEAFEE- 135 Query: 142 LAPLMRPIYLLGSDELEEEETKLIDDPIKTHKLAIEIEAAIPH----IHRYWAPKRKSAV 197 L PI LG +EEE I +LA E+E+ +P+ I+RYW Sbjct: 136 ---LFYPIMALGGI-YDEEENGAIRLQFTEGELA-ELESELPYALADIYRYWQAVINKP- 189 Query: 198 EQVQRDAPKTGRNDPCPCGSGKKYKKCCGAD 228 + V+R+ KTGRNDPCPCGSG+KYK CCG + Sbjct: 190 QTVRREGEKTGRNDPCPCGSGRKYKACCGKN 220 >NMA1272 [R] COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA NmA Neisseria meningitidis Z2491 Length = 220 Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 25/211 (11%) Query: 27 DVMTMDTLHGYLTALAIGPQEVLMAEWLPRVWGSRPEDTPKFKNGKEAERITSLIARSMN 86 + M D + G++TAL GP ++ +WLP V G D +F + +E ++A +M Sbjct: 26 NTMRCDEVQGFMTALLSGPDKLTPLDWLPEVLG----DESQFTAAERSEIERLVLAMAME 81 Query: 87 EIAITFEVAPKEYEPLFCEREHEGKPLLDAEAWAWGFWEGIQLRAEQW-----DEIFHSN 141 A ++ K+ L+ +G D W + G+ + W DE F Sbjct: 82 TTAA---MSDKKLPDLWLYENEDGGS--DFYTWCNAYLYGLDIVPTDWFEAVDDEAFEE- 135 Query: 142 LAPLMRPIYLLGSDELEEEETKLIDDPIKTHKLAIEIEAAIPH----IHRYWAPKRKSAV 197 L PI LG +EE+ I +LA E+E+ +P+ I+RYW Sbjct: 136 ---LFYPIMALGGI-YDEEDNGTIRLQFTEGELA-ELESELPYALADIYRYWQAVINKP- 189 Query: 198 EQVQRDAPKTGRNDPCPCGSGKKYKKCCGAD 228 + V+R+ KTGRNDPCPCGSG+KYK CCG + Sbjct: 190 QTVRREGEKTGRNDPCPCGSGRKYKACCGKN 220 >XF0806 [U] COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) Xfa Xylella fastidiosa 9a5c Length = 914 Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats. Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 9/110 (8%) Query: 125 EGIQLRAEQWDEIFHSNLAPLMRPIYLLGSDE---LEEEETKLIDDPIKTHKLAIEIEAA 181 E +L +E + + +A L R + + +E LEE+E + +D ++ + + Sbjct: 803 EAFELFSEMLEHVKREVIASLAR-VRIRSEEEMAALEEQERRQVDTLLRQSQFQHQEAGG 861 Query: 182 IPHIHRYWAPKRK-----SAVEQVQRDAPKTGRNDPCPCGSGKKYKKCCG 226 + +R+ +A+ QV RD PK GRNDPCPCGSGKKYK C G Sbjct: 862 YGTGDEAVSLQRQLAGQGAAIAQVIRDTPKVGRNDPCPCGSGKKYKHCHG 911