BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0052.p (234 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_ydhC [K] COG1802 Transcriptional regulators Bsu Bacillus subt... 82 1e-15 PA0797 [K] COG1802 Transcriptional regulators Pae Pseudomonas ae... 77 2e-14 Ta1394 [K] COG1802 Transcriptional regulators Tac Thermoplasma a... 75 9e-14 mll6782 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 75 1e-13 SSO1255 [K] COG1802 Transcriptional regulators Sso Sulfolobus so... 75 1e-13 SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium... 74 2e-13 mlr8380 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 74 2e-13 SMa0062 [K] COG1802 Transcriptional regulators Sme Sinorhizobium... 73 4e-13 RSp0436 [K] COG1802 Transcriptional regulators Rso Ralstonia sol... 71 2e-12 BMEII1007 [K] COG1802 Transcriptional regulators Bme Brucella me... 70 3e-12 >BS_ydhC [K] COG1802 Transcriptional regulators Bsu Bacillus subtilis Length = 224 Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 5/198 (2%) Query: 12 QVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRGWKV 71 Q Y++LK IF+ PG+ ET++A+ GVSR+P+R+A+ L+++G L+ R G+ + Sbjct: 15 QFYNQLKKMIFNGTFKPGERINETQLAKSFGVSRSPIREAMRLLEKDGLLKADDRNGFSI 74 Query: 72 CPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDA---RQTDAVKV 128 + +D +Y +RI LE A++ + + + ELT L L E + T+ ++ Sbjct: 75 TSLTAKDVDEIYKIRIPLEQLAVELVIDEAD-EEELTILEK-QLEETEKAIHNGTEDTEI 132 Query: 129 AQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHGKILQLIA 188 +L++ FH LV + N + + V + I R L++ R + EH +I + + Sbjct: 133 IRLNQKFHELLVDFSHNRHLKNLLEHVNDLIHFCRILNYTGDHRAETILREHRRIFEEVK 192 Query: 189 KRKATEAQILLRAHITQS 206 K+ A+ + AH Sbjct: 193 KKNKEAAKQHVLAHFNHD 210 >PA0797 [K] COG1802 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 240 Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 13/215 (6%) Query: 6 ANALAEQVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGF 65 L+E V+ +++ I S + PG +E E+A+ G+SR PLR+A+ RL+ L Sbjct: 15 GETLSEHVFRKIQSAIVSGEIAPGSKISEPELARTYGISRGPLREAIHRLEGLRLLVRVP 74 Query: 66 RRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDARQTDA 125 G +V + L LY++R LE A +L ++ + AE+ +L + D + D Sbjct: 75 HVGARVVSLSHAELIELYEIRESLEGMAC-RLAAERMSQAEIDELRRVL----DTHERDE 129 Query: 126 VKVA-------QLDEAFHTNLVAAAGNEEMTRV-HTEVTEKIRIVRRLDFLKKKRIDATY 177 A + D FH ++ +GN +TR+ E+ + +R+ R R + Sbjct: 130 AFQAGRGYYQQEGDYDFHYRIIQGSGNATLTRMLCGELYQLVRMYRIQYSTTPNRPRQAF 189 Query: 178 EEHGKILQLIAKRKATEAQILLRAHITQSKLEVRK 212 EH +IL IA R A++L+R HI+ S+ + + Sbjct: 190 AEHHRILDAIADRDGELAELLMRRHISASRRNIER 224 >Ta1394 [K] COG1802 Transcriptional regulators Tac Thermoplasma acidophilum Length = 217 Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 105/200 (52%), Gaps = 9/200 (4%) Query: 9 LAEQVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRG 68 L++++Y + D+I S RL G E ++ VS+TP+R+A+ L+ E EV + G Sbjct: 7 LSKKIYSYIIDEIVSGRLRMGQIIDENKIKDVFNVSKTPIREAIISLENE---EVVKKNG 63 Query: 69 --WKVCPIDFDRLDNLYDLRIVLE-MAALDKLCSQPEASAELTQLNAIWLAEPDAR-QTD 124 + V I+ + +D +++ R LE +AA L +Q EL Q+ I D +TD Sbjct: 64 KSYFVSFIEPEEIDQIFEARRELESIAAF--LAAQRMQRQELKQMENIITKLKDVNGETD 121 Query: 125 AVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHGKIL 184 +++A L+ FH+ + A+GN+ + + K+RIVR F +R + Y+EH I Sbjct: 122 PIELANLNGKFHSLIAKASGNKYIESCVNSMRLKLRIVRVTLFTSIERREDEYKEHFGIF 181 Query: 185 QLIAKRKATEAQILLRAHIT 204 + I + A +A+ L+ H T Sbjct: 182 EAIKNKDADKARSLMFNHET 201 >mll6782 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 224 Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 101/208 (48%), Gaps = 6/208 (2%) Query: 2 TVTLANALAEQVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYL 61 T+ A L +Q+YH++++ I +L PG+ E +A+ GVSRTP+R+A+ R+ EG + Sbjct: 7 TLNRALPLRDQIYHKIRNLIVVGQLKPGEVINEVAIAEALGVSRTPVREAVKRISDEGLV 66 Query: 62 EVGFRRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQ-PEASAELTQLN--AIWLAEP 118 ++ + G V PI L+ Y +R LEM + + ++ ASAEL + N A LA Sbjct: 67 KILAQTGTYVAPISRADLEEAYVIRRALEMESARRAAAKLTPASAELLEDNMAAHKLAIS 126 Query: 119 DARQTDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYE 178 R A+ QLD+ FH + G + R ++ R L K + T E Sbjct: 127 RGRYATAI---QLDDVFHRTIAEICGLPMIWRAVDISKAQMDRGRYLAIPKPGYGEQTIE 183 Query: 179 EHGKILQLIAKRKATEAQILLRAHITQS 206 +H IL + + A A + H+ S Sbjct: 184 QHEAILDALKRHDAEGAAQAMENHLETS 211 >SSO1255 [K] COG1802 Transcriptional regulators Sso Sulfolobus solfataricus Length = 212 Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 100/200 (50%), Gaps = 12/200 (6%) Query: 8 ALAEQVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRR 67 +L++ Y ++ + I + + PG+ E E+A +SRTP+R+AL RL++EG + V + Sbjct: 2 SLSQIAYEKILEYIITGKYKPGNTLKEEELASLLKISRTPIREALARLEKEGVI-VKNGK 60 Query: 68 GWKVCPIDFDRLDNLYDLRIVLE-----MAALDKLCSQPEASAELTQLNAIWLAEPDARQ 122 + V P+ + LY++RI LE +AA+ SQ E + + LN I + Sbjct: 61 SFTVIPLTESDILQLYEVRINLESLSAKLAAIR--ASQDEINKIINVLNEIR----GSAN 114 Query: 123 TDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHGK 182 D + +A L+ H + A+ N+ + + + K++IVR F +R D + EH Sbjct: 115 ADPLTLANLNGNLHRAIAEASHNKYIVDILDSIRLKLKIVRITLFTSFQRRDEEFREHES 174 Query: 183 ILQLIAKRKATEAQILLRAH 202 I+ I R A ++R H Sbjct: 175 IVIAIKNRSPDLAYDMMRMH 194 >SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 224 Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 18/206 (8%) Query: 9 LAEQVYHRLKDDI----FSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYLEVG 64 ++E ++++L+DDI + PG+ ET++A R GVSRTP+R+AL +L G +E+ Sbjct: 1 MSENIFYKLRDDIENGIVTGEFEPGERLDETQLAMRFGVSRTPIREALMQLSAIGLVEIR 60 Query: 65 FRRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPD----- 119 RRG V R+ ++++ MA L+ + A + +A LA + Sbjct: 61 PRRGAVVVDPAPQRVYEMFEV-----MAELEGMAGALAARRHTEEDSAALLAAHEKCREA 115 Query: 120 --ARQTDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATY 177 + +TD + +E FH + A+ + + T + ++R RRL + R+ ++ Sbjct: 116 VLSEETD--RYYYENEIFHRAIYTASHSGFLEEQCTTLHRRLRPYRRLQLRVRNRMKVSF 173 Query: 178 EEHGKILQLIAKRKATEAQILLRAHI 203 EHG+I++ I A+ LR+H+ Sbjct: 174 REHGEIVEAILSGNTDGAREGLRSHV 199 >mlr8380 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 372 Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 8/205 (3%) Query: 6 ANALAE--QVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYLEV 63 NA+++ V +L++ I + PG+ TE + R G SRTP+R AL RL+ EG V Sbjct: 149 GNAMSQMQNVERQLREMILGLEIGPGEKLTERWIEGRFGASRTPVRAALLRLETEGL--V 206 Query: 64 GF-RRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDARQ 122 G RGW V PI+ L+ + R +E+AA+ C E+SA + + A+ L D + Sbjct: 207 GRDGRGWTVSPINLAELEQIAVYREAVEVAAVRLTCMHAESSA-IDVIEAM-LDSCD-QN 263 Query: 123 TDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHGK 182 T + ++ FH L +GNE + R + ++ R L+ + + + EH Sbjct: 264 TPREEWHRVGMDFHIELARLSGNEFLFRAVRDAMTRLSRARWLEVRDEAALGRAWAEHRA 323 Query: 183 ILQLIAKRKATEAQILLRAHITQSK 207 IL A EA LL AHI S+ Sbjct: 324 ILAAARLGDADEAARLLCAHIVGSR 348 >SMa0062 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 229 Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 1/214 (0%) Query: 1 MTVTLANALAEQVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGY 60 MT + + AE Y L I L P + E +A GVSRTP+R+AL RL EG Sbjct: 1 MTRDIKISAAEHCYRTLSRKIIGLELKPNEPIGEHALAGLLGVSRTPVREALSRLSAEGL 60 Query: 61 LEVGFRRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDA 120 +++ R G V PI D + +R LE+A + + Q L AI E Sbjct: 61 VDLRSRAGVVVAPIRMDAVRTAQFVREQLELAIVAEAAQQSNRRVLLGIRQAIEEQELAI 120 Query: 121 RQTDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEH 180 + + + DE H + AG + + ++ + + VRRL ++ ++D E+H Sbjct: 121 LEDNPDLFFECDERMHALYCSLAGRDGVWAFISDAKKHMDRVRRLS-IQAGQLDQLVEDH 179 Query: 181 GKILQLIAKRKATEAQILLRAHITQSKLEVRKIT 214 ++L+ + + AT+AQ ++R H+ ++ +++ +++ Sbjct: 180 RRVLKAVGEGDATKAQEIMRLHLRRAVVDLGELS 213 >RSp0436 [K] COG1802 Transcriptional regulators Rso Ralstonia solanacearum Length = 205 Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 7/193 (3%) Query: 21 IFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRGWKVCPIDFDRLD 80 I + + PG+ TE + G SRTP+R AL RL+ +G + RGW V P+D ++ Sbjct: 2 ILNMEIGPGERLTERWAEAQLGASRTPVRAALLRLETDGLI-CREGRGWMVTPLDIQEIE 60 Query: 81 NLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDARQTDAVKVAQLDEAFHTNLV 140 L+ R VLE+AA+ +L ++ L +L A E T + QL FH L Sbjct: 61 QLFVYREVLEVAAI-QLAAKHANIEALDRLEAA--LEACRPGTSTREAHQLGTEFHVQLA 117 Query: 141 AAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHGKILQLIAKRKATEAQILLR 200 A A N+ + R + ++ R LD + + ++EH +L + + A +A L+ Sbjct: 118 ALAANDFIARGVADAMTRLSRARWLDTTPEHQ---GWDEHRAVLAALREGDAAKASALVS 174 Query: 201 AHITQSKLEVRKI 213 H+ S+ + KI Sbjct: 175 QHLRDSRDRLMKI 187 >BMEII1007 [K] COG1802 Transcriptional regulators Bme Brucella melitensis Length = 233 Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 104/210 (49%), Gaps = 16/210 (7%) Query: 13 VYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRGWKVC 72 VY L+D+I +L PG E ++A+R G+SRTP+R+AL RL EG +E R V Sbjct: 20 VYDLLRDEILDLKLAPGSPIDEVQLAERFGMSRTPIREALVRLSSEGLVETLPNRSTMVS 79 Query: 73 PIDFDRLDNLYDLRIVLEMAALDKLCSQ---PEASAELTQLNAIWLAEPDARQTDAVKVA 129 IDF + +D +VL +L +Q PE + +L A + A DA+ +A+ + Sbjct: 80 NIDFLNMHTFFDA-LVLMYRVTTRLAAQYHRPEDLRIIHELQAQFTAAVDAQ--NALGMI 136 Query: 130 QLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRL------DFLKKKRIDATYEEHGKI 183 + AFH + A N T + + ++ R + RL D L ++ + EEH +I Sbjct: 137 ATNAAFHAAIADAGRNAYFTGLFNRLLDEGRRIMRLYYQSYDDRLPRRFV----EEHEEI 192 Query: 184 LQLIAKRKATEAQILLRAHITQSKLEVRKI 213 + I R +A L + H Q +VRK+ Sbjct: 193 IAAIEARDVAQADRLGKIHAEQIVEQVRKL 222