BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0030.p (230 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1534 [TK] COG0745 Response regulators consisting of a CheY-li... 231 9e-61 VC0719 [TK] COG0745 Response regulators consisting of a CheY-lik... 224 1e-58 STM0397 [TK] COG0745 Response regulators consisting of a CheY-li... 223 3e-58 phoB [TK] COG0745 Response regulators consisting of a CheY-like ... 221 8e-58 ZphoB [TK] COG0745 Response regulators consisting of a CheY-like... 221 8e-58 ECs0449 [TK] COG0745 Response regulators consisting of a CheY-li... 221 8e-58 YPO3205 [TK] COG0745 Response regulators consisting of a CheY-li... 216 5e-56 PA5360 [TK] COG0745 Response regulators consisting of a CheY-lik... 214 9e-56 mll3716 [TK] COG0745 Response regulators consisting of a CheY-li... 209 6e-54 SMc02140 [TK] COG0745 Response regulators consisting of a CheY-l... 208 1e-53 >RSc1534 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 237 Score = 231 bits (589), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 115/228 (50%), Positives = 162/228 (71%), Gaps = 8/228 (3%) Query: 8 ILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHIAESLPHVVLLDWMLPDSSGLVL 67 IL+VEDEP+IAEL+ +Q AG A + QA +++ LP +VLLDWMLP SG++ Sbjct: 5 ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMF 64 Query: 68 LNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127 ELR ++RT +P+IMLTA+ E+DK+ GL+ GADDYVTKPFSPKEL+AR++A+LRR+A Sbjct: 65 AKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRRRA 124 Query: 128 PEIGSQALKYRDISIDVERRQVSV----ADKPVLLD--QAEFKLLRYLVAHPERIFSRAQ 181 P++ + + +D +V+ ++ P+ LD EF+LL +L+ HPER+ SR+Q Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTAVNSESENPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 184 Query: 182 LLDKVWGDHTFIEERTVDVHIMRLRKSL--GDLAHYVQTVRGMGYKLS 227 LLD+VWGDH F+EERTVDVHI RLR +L G + ++TVRG GY+L+ Sbjct: 185 LLDQVWGDHVFVEERTVDVHIKRLRAALAPGGYSSMIETVRGSGYRLA 232 >VC0719 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Vch Vibrio cholerae Length = 229 Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 107/224 (47%), Positives = 153/224 (68%), Gaps = 2/224 (0%) Query: 8 ILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHIAESLPHVVLLDWMLPDSSGLVL 67 IL+VEDE I E+L F ++ G+ A D A +AE P +VLLDWMLP SG+ L Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGINL 64 Query: 68 LNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127 + ++R++ T ++PV+MLTA+G EEDKV+GL GADDY+TKPFSPKELVAR++A++RR Sbjct: 65 IKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124 Query: 128 PEIGSQALKYRDISIDVERRQVSVADKPVLLDQAEFKLLRYLVAHPERIFSRAQLLDKVW 187 P + + + +D +V+ D+P+ + EFK+L + + H ER++SR QLL+ VW Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 188 GDHTFIEERTVDVHIMRLRKSLGDLAH--YVQTVRGMGYKLSAE 229 G + ++E+RTVDVHI RLRK+L D H +QTVRG GY+ S + Sbjct: 185 GTNVYVEDRTVDVHIRRLRKALEDAGHDKLIQTVRGAGYRFSTK 228 >STM0397 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sty Salmonella typhimurium LT2 Length = 229 Score = 223 bits (567), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 108/223 (48%), Positives = 150/223 (67%), Gaps = 2/223 (0%) Query: 8 ILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHIAESLPHVVLLDWMLPDSSGLVL 67 IL+VEDE I E++ F ++ GF A D A + E P ++LLDWMLP SGL Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGSGLQF 64 Query: 68 LNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127 + L+R+ T +PV+MLTA+G EED+V+GL GADDY+TKPFSPKELVAR++A++RR + Sbjct: 65 IKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 128 PEIGSQALKYRDISIDVERRQVSVADKPVLLDQAEFKLLRYLVAHPERIFSRAQLLDKVW 187 P + ++ + +S+D +V D P+ + EFKLL + + HPER++SR QLL+ VW Sbjct: 125 PMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 Query: 188 GDHTFIEERTVDVHIMRLRKSLGDLAH--YVQTVRGMGYKLSA 228 G + ++E+RTVDVHI RLRK+L H VQTVRG GY+ S Sbjct: 185 GTNVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRFST 227 >phoB [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 229 Score = 221 bits (564), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 106/223 (47%), Positives = 151/223 (67%), Gaps = 2/223 (0%) Query: 8 ILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHIAESLPHVVLLDWMLPDSSGLVL 67 IL+VEDE I E++ F ++ GF A D A + E P ++LLDWMLP SG+ Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 Query: 68 LNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127 + L+R+ T +PV+MLTA+G EED+V+GL GADDY+TKPFSPKELVAR++A++RR + Sbjct: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 128 PEIGSQALKYRDISIDVERRQVSVADKPVLLDQAEFKLLRYLVAHPERIFSRAQLLDKVW 187 P + ++ + +S+D +V ++P+ + EFKLL + + HPER++SR QLL+ VW Sbjct: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 Query: 188 GDHTFIEERTVDVHIMRLRKSLGDLAH--YVQTVRGMGYKLSA 228 G + ++E+RTVDVHI RLRK+L H VQTVRG GY+ S Sbjct: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 >ZphoB [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain EcZ Escherichia coli O157:H7 EDL933 Length = 229 Score = 221 bits (564), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 106/223 (47%), Positives = 151/223 (67%), Gaps = 2/223 (0%) Query: 8 ILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHIAESLPHVVLLDWMLPDSSGLVL 67 IL+VEDE I E++ F ++ GF A D A + E P ++LLDWMLP SG+ Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 Query: 68 LNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127 + L+R+ T +PV+MLTA+G EED+V+GL GADDY+TKPFSPKELVAR++A++RR + Sbjct: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 128 PEIGSQALKYRDISIDVERRQVSVADKPVLLDQAEFKLLRYLVAHPERIFSRAQLLDKVW 187 P + ++ + +S+D +V ++P+ + EFKLL + + HPER++SR QLL+ VW Sbjct: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 Query: 188 GDHTFIEERTVDVHIMRLRKSLGDLAH--YVQTVRGMGYKLSA 228 G + ++E+RTVDVHI RLRK+L H VQTVRG GY+ S Sbjct: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 >ECs0449 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ecs Escherichia coli O157:H7 Length = 229 Score = 221 bits (564), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 106/223 (47%), Positives = 151/223 (67%), Gaps = 2/223 (0%) Query: 8 ILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHIAESLPHVVLLDWMLPDSSGLVL 67 IL+VEDE I E++ F ++ GF A D A + E P ++LLDWMLP SG+ Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 Query: 68 LNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127 + L+R+ T +PV+MLTA+G EED+V+GL GADDY+TKPFSPKELVAR++A++RR + Sbjct: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 128 PEIGSQALKYRDISIDVERRQVSVADKPVLLDQAEFKLLRYLVAHPERIFSRAQLLDKVW 187 P + ++ + +S+D +V ++P+ + EFKLL + + HPER++SR QLL+ VW Sbjct: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 Query: 188 GDHTFIEERTVDVHIMRLRKSLGDLAH--YVQTVRGMGYKLSA 228 G + ++E+RTVDVHI RLRK+L H VQTVRG GY+ S Sbjct: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227 >YPO3205 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ype Yersinia pestis Length = 229 Score = 216 bits (549), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 105/223 (47%), Positives = 151/223 (67%), Gaps = 2/223 (0%) Query: 8 ILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHIAESLPHVVLLDWMLPDSSGLVL 67 IL+VEDE I E++ F ++ G+ A D A ++E P +VLLDWMLP SG+ Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGSGIQF 64 Query: 68 LNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127 + ++R+ T +PV+MLTA+G EED+V+GL GADDY+TKPFSPKELVAR++A++RR + Sbjct: 65 IKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 128 PEIGSQALKYRDISIDVERRQVSVADKPVLLDQAEFKLLRYLVAHPERIFSRAQLLDKVW 187 P + ++ + +S+D +V D+ + + EFKLL + + HPER++SR QLL+ VW Sbjct: 125 PMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNYVW 184 Query: 188 GDHTFIEERTVDVHIMRLRKSLGDLAH--YVQTVRGMGYKLSA 228 G + ++E+RTVDVHI RLRK+L H VQTVRG GY+ S Sbjct: 185 GTNVYVEDRTVDVHIRRLRKALETDGHDKMVQTVRGTGYRFST 227 >PA5360 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 229 Score = 214 bits (546), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 103/223 (46%), Positives = 154/223 (69%), Gaps = 1/223 (0%) Query: 8 ILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHIAESLPHVVLLDWMLPDSSGLVL 67 IL+V+DE I E++ ++ AG+ A + QA I + P ++LLDWMLP +SG+ L Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGIEL 65 Query: 68 LNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127 L+RD+ T +P+IMLTAKG E++K++GL GADDY+TKPFSP+ELVAR++A+LRR Sbjct: 66 ARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTG 125 Query: 128 PEIGSQALKYRDISIDVERRQVSVADKPVLLDQAEFKLLRYLVAHPERIFSRAQLLDKVW 187 P ++ + +D +V++ KP + E++LL++ + H ER ++R QLLD+VW Sbjct: 126 PGDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185 Query: 188 GDHTFIEERTVDVHIMRLRKSLGDL-AHYVQTVRGMGYKLSAE 229 G + ++EERTVDVHI RLRK+LG++ + VQTVRG GY+ S + Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGEVYENLVQTVRGTGYRFSTK 228 >mll3716 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Mlo Mesorhizobium loti Length = 229 Score = 209 bits (531), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 102/223 (45%), Positives = 148/223 (66%), Gaps = 2/223 (0%) Query: 6 PHILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHIAESLPHVVLLDWMLPDSSGL 65 P I++VEDE + LLR+ ++ G+ + T +A + E++P +++LDWM+P SG+ Sbjct: 4 PRIMVVEDEEPLGVLLRYNLESEGYQVEVVTRGDEAEIRLQENVPDLLVLDWMVPAVSGI 63 Query: 66 VLLNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRR 125 L LR T LP+IMLTA+G E D+V+GL+ GADDY+ KPFS E +ARV+ALLRR Sbjct: 64 ELCRRLRMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFMARVKALLRR 123 Query: 126 KAPEIGSQALKYRDISIDVERRQVSVADKPVLLDQAEFKLLRYLVAHPERIFSRAQLLDK 185 PE+ S LK DI +D E +V + L EF+LL +++ HP R+FSR+QLLD Sbjct: 124 AKPEVLSSVLKVGDIVLDRESHRVYRKKSEIRLGPTEFRLLEFMMRHPGRVFSRSQLLDN 183 Query: 186 VWGDHTFIEERTVDVHIMRLRKSL--GDLAHYVQTVRGMGYKL 226 VWG+ +I+ERTVDVH+ RLRK++ G + ++T+RG GY + Sbjct: 184 VWGETIYIDERTVDVHVGRLRKAVNNGRMPDVIRTIRGAGYAI 226 >SMc02140 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sme Sinorhizobium meliloti Length = 227 Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 106/226 (46%), Positives = 149/226 (65%), Gaps = 2/226 (0%) Query: 5 LPHILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHIAESLPHVVLLDWMLPDSSG 64 LP I +VEDE +++ LLR+ ++ GF +A + E LP +++LDWMLP SG Sbjct: 2 LPKIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSG 61 Query: 65 LVLLNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLR 124 + L LR+ T LP+IMLTA+G E ++V+GL GADDYV KPFS EL+ARV+A+LR Sbjct: 62 IELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLR 121 Query: 125 RKAPEIGSQALKYRDISIDVERRQVSVADKPVLLDQAEFKLLRYLVAHPERIFSRAQLLD 184 R PE+ S L+ DI +D E +V + V L EF+LL +L++ P R+FSR+QLLD Sbjct: 122 RAKPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLD 181 Query: 185 KVWGDHTFIEERTVDVHIMRLRKSLG--DLAHYVQTVRGMGYKLSA 228 VWG +++ERTVDVH+ RLRK+L ++ ++TVRG GY L + Sbjct: 182 GVWGHDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLES 227