BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0023.p (158 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1522 [K] COG0782 Transcription elongation factor Rso Ralstoni... 228 3e-60 NMA1643 [K] COG0782 Transcription elongation factor NmA Neisseri... 216 2e-56 NMB1430 [K] COG0782 Transcription elongation factor Nme Neisseri... 214 9e-56 PM0715 [K] COG0782 Transcription elongation factor Pmu Pasteurel... 182 3e-46 HI1331 [K] COG0782 Transcription elongation factor Hin Haemophil... 180 1e-45 STM3299 [K] COG0782 Transcription elongation factor Sty Salmonel... 179 3e-45 XF1108 [K] COG0782 Transcription elongation factor Xfa Xylella f... 174 6e-44 BU384 [K] COG0782 Transcription elongation factor Buc Buchnera s... 174 6e-44 PA4755 [K] COG0782 Transcription elongation factor Pae Pseudomon... 174 1e-43 greA [K] COG0782 Transcription elongation factor Eco Escherichia... 170 1e-42 >RSc1522 [K] COG0782 Transcription elongation factor Rso Ralstonia solanacearum Length = 158 Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 108/158 (68%), Positives = 136/158 (86%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 MST+P+TKRGAE+LK+EL RLKTK+RP V+NAIAEARAQGDLSENA+Y++AKERQ FIEG Sbjct: 1 MSTIPITKRGAEMLKDELQRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEG 60 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RI ++E KL AAQ++DPA L+A+GR+VF +T+DLE+LDSG+ VTYQIVG DEAD+ K+ Sbjct: 61 RILEIESKLAAAQVIDPAGLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDSGKI 120 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 S++SPIARALIGK GDV V AP G +EYE+ V+Y+ Sbjct: 121 SISSPIARALIGKYEGDVATVVAPGGEREYEVRAVKYL 158 >NMA1643 [K] COG0782 Transcription elongation factor NmA Neisseria meningitidis Z2491 Length = 158 Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 104/158 (65%), Positives = 130/158 (82%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 M +PLT RGAELLK+EL +LK+ RPEVI AIAEAR+ GDLSENAEYE+AKERQ FIEG Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RI++LE KL A I++P E++AEG++VF +TV LE+L++ E VTYQIVG DEADIK+ K+ Sbjct: 61 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 V SPIARALIGK GD V+AP G++EY+I+EVRY+ Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 158 >NMB1430 [K] COG0782 Transcription elongation factor Nme Neisseria meningitidis MC58 Length = 158 Score = 214 bits (544), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 103/158 (65%), Positives = 129/158 (81%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 M +PLT RGAELLK+EL +LK+ RPEVI AIAEAR+ GDLSENAEYE+AKERQ FIEG Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RI++LE KL A I++P E++AEG++VF +TV LE+L++ E V YQIVG DEADIK+ K+ Sbjct: 61 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVIYQIVGEDEADIKQGKI 120 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 V SPIARALIGK GD V+AP G++EY+I+EVRY+ Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 158 >PM0715 [K] COG0782 Transcription elongation factor Pmu Pasteurella multocida Length = 158 Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 89/157 (56%), Positives = 115/157 (73%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 M +P+T RGAE LK+EL LK RPE+INAIAEAR GDL ENAEY +A+E+Q F EG Sbjct: 1 MKQIPMTIRGAEQLKQELDFLKNTRRPEIINAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RI ++EGKL +QI+D ++ G+V+F +T+ L N+D+ E+V+YQIVG DEA+IK + Sbjct: 61 RIQEIEGKLANSQIIDVTKIPNNGKVIFGATILLLNIDTEEEVSYQIVGDDEANIKAGLI 120 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRY 157 SV SPIAR LIGK DVV ++ P G E+EILEV Y Sbjct: 121 SVNSPIARGLIGKEVDDVVVIQTPGGKVEFEILEVEY 157 >HI1331 [K] COG0782 Transcription elongation factor Hin Haemophilus influenzae Length = 158 Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 88/158 (55%), Positives = 115/158 (72%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 M +P+T RGAE L+EEL LK RPE+I AIAEAR GDL ENAEY +A+E+Q F EG Sbjct: 1 MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RI ++EGKLG AQI+D +++ G+V+F +TV L N ++ E+VTY+IVG DEADIK + Sbjct: 61 RIQEIEGKLGNAQIIDVSKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLI 120 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 SV SPIAR LIGK D V + P G+ E++I+EV Y+ Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158 >STM3299 [K] COG0782 Transcription elongation factor Sty Salmonella typhimurium LT2 Length = 158 Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 88/158 (55%), Positives = 115/158 (72%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 M +P+T RGAE L+EEL LK+ RPE+I AIAEAR GDL ENAEY +A+E+Q F EG Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RI D+E KL AQ++D ++ GRV+F +TV + NLD+ E+ TY+IVG DEAD K++ + Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLI 120 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 SV SPIAR LIGK DVV ++ P G EYE+L+V Y+ Sbjct: 121 SVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 158 >XF1108 [K] COG0782 Transcription elongation factor Xfa Xylella fastidiosa 9a5c Length = 154 Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 84/153 (54%), Positives = 118/153 (77%) Query: 6 LTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEGRIADL 65 +T +G L++EL LK+ RPE+INAIAEARA GDL ENAEY +A+E+Q+FIEGRI L Sbjct: 1 MTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60 Query: 66 EGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKVSVTSP 125 EG+L A+++D A+LNA ++VF +TV L +L++ E+ YQIVG EADIK+ V+++SP Sbjct: 61 EGELSHAEVIDVAKLNAGTKIVFGATVTLVDLETDEESRYQIVGDLEADIKQGLVAISSP 120 Query: 126 IARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 +ARALIGK GD + +EAP+G +EYE++ V Y+ Sbjct: 121 VARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 153 >BU384 [K] COG0782 Transcription elongation factor Buc Buchnera sp. APS Length = 159 Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 82/158 (51%), Positives = 115/158 (72%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 ++ +P+T RGAE L+ EL +LK+ +RP +I AIAEAR GDL ENAEY SA+E Q+F EG Sbjct: 2 INLIPMTVRGAEKLRRELKKLKSINRPRIIAAIAEAREHGDLKENAEYHSAREEQSFCEG 61 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RI ++E KL +QI+D +++ GRV+F STV + N+ + EK TY+IVG DE+D K++ + Sbjct: 62 RIKEIELKLSNSQIIDVTKISNNGRVIFGSTVSILNIKNNEKFTYRIVGDDESDFKKNLI 121 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 S+ SPIAR LIGK DVV + P G EY+IL++ Y+ Sbjct: 122 SINSPIARGLIGKEINDVVIICTPGGDVEYKILKINYI 159 >PA4755 [K] COG0782 Transcription elongation factor Pae Pseudomonas aeruginosa Length = 158 Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 87/158 (55%), Positives = 113/158 (71%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 MS P+T +GA L+EE+ LK RP++ AIAEAR GDL ENAEY +A+E+Q +E Sbjct: 1 MSKFPMTVQGARALEEEVKHLKGVLRPQISQAIAEARELGDLKENAEYHAAREQQGMVEA 60 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RI D+E KL AQ++D + G+V+F +TVD+ N+++ E VTYQIVG DEADIK K+ Sbjct: 61 RIRDIEAKLSNAQVIDVTAIPHSGKVIFGTTVDIANVETDETVTYQIVGDDEADIKGGKI 120 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 SV SPIARALIGK+ GD V V P G EYEI+EVR++ Sbjct: 121 SVNSPIARALIGKTEGDAVLVRTPGGDVEYEIVEVRHI 158 >greA [K] COG0782 Transcription elongation factor Eco Escherichia coli K12 Length = 153 Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 85/153 (55%), Positives = 112/153 (73%) Query: 6 LTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEGRIADL 65 +T RGAE L+EEL LK+ RPE+I AIAEAR GDL ENAEY +A+E+Q F EGRI D+ Sbjct: 1 MTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDI 60 Query: 66 EGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKVSVTSP 125 E KL AQ++D ++ GRV+F +TV + NLDS E+ TY+IVG DEAD K++ +SV SP Sbjct: 61 EAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVNSP 120 Query: 126 IARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 IAR LIGK DVV ++ P G E+E+++V Y+ Sbjct: 121 IARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 153