BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0010.p (184 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4776 [TK] COG0745 Response regulators consisting of a CheY-lik... 64 2e-10 XF0389 [TK] COG0745 Response regulators consisting of a CheY-lik... 64 2e-10 BMEII0791 [TK] COG0745 Response regulators consisting of a CheY-... 63 5e-10 mlr2666 [TK] COG0745 Response regulators consisting of a CheY-li... 62 7e-10 PA4101 [TK] COG0745 Response regulators consisting of a CheY-lik... 61 1e-09 RSp1196 [TK] COG0745 Response regulators consisting of a CheY-li... 61 2e-09 RSc1648 [TK] COG0745 Response regulators consisting of a CheY-li... 60 4e-09 >PA4776 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 221 Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 15/181 (8%) Query: 8 DIAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADFCEPMPVR 67 D+ ++D+G +++R LR +LL+ A D+ +A R+ GL+SGAD P Sbjct: 46 DLLVLDIGLPRRSGLDILRNLRHQGLLTPVLLLTARDK-VADRVAGLDSGADDYLTKPFD 104 Query: 68 LDILMTYINVILRR--------LVPGVWQLDLKARTLRTPSNDALKVNEKEMALLRLLAA 119 LD L + + RR LV G +LD + T S A+++ +E ALLRLL Sbjct: 105 LDELQARVRALTRRTTGRALPQLVHGELRLDPATHQV-TLSGQAVELAPREYALLRLLLE 163 Query: 120 NSHHLASRSDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTLHGEGYYFSE 179 NS + SR+ + D + +E V LRR KL + ++T+ G GY + Sbjct: 164 NSGKVLSRNQLEQSLYGWSGDVESNAIEVHVHHLRR-----KLGNQLIRTVRGIGYGIDQ 218 Query: 180 P 180 P Sbjct: 219 P 219 >XF0389 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Xfa Xylella fastidiosa 9a5c Length = 227 Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 11/179 (6%) Query: 8 DIAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADFCEPMPVR 67 D+ I+D+G ++V+ LR + +L++ A S++ GL GAD P Sbjct: 46 DVGIIDLGLPKMSGMDLVKALRDEGKKFPVLILTARSSW-QSKVEGLKQGADDYLVKPFH 104 Query: 68 LDILMTYINVILRR--------LVPGVWQLDLKARTLRTPSNDALKVNEKEMALLRLLAA 119 ++ L+ +N +LRR L G LDL A+T+ + + + E +L L Sbjct: 105 VEELLARVNALLRRAAGWSKPTLECGSVALDLAAQTVSVNGTN-VDLTSYEYKVLEYLMV 163 Query: 120 NSHHLASRSDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTLHGEGYYFS 178 ++ L S++D+ + D D +LE + RLR+K ++ P++T+ G GY F+ Sbjct: 164 HAGELVSKADLTEHIYQQDFDRDSNVLEVFIGRLRKKL-DADGDLKPIETVRGRGYRFA 221 >BMEII0791 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Bme Brucella melitensis Length = 238 Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 22/192 (11%) Query: 8 DIAIVDM---GRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADFCEPM 64 D+ I+D+ G++ C+ VRR +R+ I+++ A + A +ILGL GAD Sbjct: 50 DLVILDVMLPGKSGIEICQDVRR----TSRVPIIMLTAIADA-ADKILGLEIGADDYIAK 104 Query: 65 PVRLDILMTYINVILRRLVP--------------GVWQLDLKARTLRTPSNDALKVNEKE 110 P L+ I +LRR W LD R L +P + +++ E Sbjct: 105 PFDPRELLARIRAVLRRFEGNRSPQRALTQIYRFAGWTLDCARRRLTSPHDVRVELTTAE 164 Query: 111 MALLRLLAANSHHLASRSDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTL 170 LL +S H+ SR + + G V +R ++ ++SRLR+K + + + T+ Sbjct: 165 FNLLEAFVKSSQHILSRDQLMEMAGHQAVYGYDRSVDILISRLRKKLEDDPCAPKLILTI 224 Query: 171 HGEGYYFSEPIQ 182 G GY F ++ Sbjct: 225 RGGGYQFGHEVE 236 >mlr2666 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Mlo Mesorhizobium loti Length = 218 Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 87/182 (47%), Gaps = 18/182 (9%) Query: 8 DIAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADFCEPMPVR 67 D+ ++D+ ++ + LRA + IL++ A E SRILGL +GAD P P Sbjct: 42 DLLVLDVMMPGESGVDLTKSLRA-EKNVPILMLTALSET-DSRILGLEAGADDYLPKPFD 99 Query: 68 LDILMTYINVILRR-----------LVPGVWQLDLKARTLRTPSNDALKVNEKEMALLRL 116 L+ IN ILRR LV G + + R L+ +ALK+ ++E +L + Sbjct: 100 PRELILRINNILRRGGPATTPKVEQLVFGPYTFQIARRELKR-GGEALKLTDREQEILAI 158 Query: 117 LAANSHHLASRSDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTLHGEGYY 176 AA + R ++ G + ER ++ ++RLRRK + + LQT+ G GY Sbjct: 159 FAARAGETIPRHELVG----DDSEVGERTIDVQINRLRRKIERDPSNPVWLQTVRGIGYR 214 Query: 177 FS 178 S Sbjct: 215 LS 216 >PA4101 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 246 Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 20/200 (10%) Query: 1 MMPARAGDIAIVDMGRAAGPACEVVRRLRAVNARIG--ILLIAAPDECIASRILGLNSGA 58 + A D+ ++D+ + R LR + ++L A DE RI+GL GA Sbjct: 43 FLEANTVDLIVLDIMMPGDDGLLLCRELRVGKHKATPVLMLTARNDET--DRIIGLEMGA 100 Query: 59 DFCEPMPVRLDILMTYINVILRR--LVP--------------GVWQLDLKARTLRTPSND 102 D P L+ IN +LRR ++P G WQLD AR L + Sbjct: 101 DDYLTKPFSARELLARINAVLRRTRMLPPNLTVSESSRLIGFGQWQLDTSARHLLDDAGT 160 Query: 103 ALKVNEKEMALLRLLAANSHHLASRSDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKL 162 + ++ E LLR+ + + SR + + D +R ++ +VSRLR++ + Sbjct: 161 VVALSGAEYRLLRVFLDHPQRVLSRDQLLNLTQGREADIFDRSIDLLVSRLRQRLGDDAR 220 Query: 163 SSLPLQTLHGEGYYFSEPIQ 182 ++T+ EGY FS P++ Sbjct: 221 EPEYIKTVRSEGYVFSLPVR 240 >RSp1196 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 245 Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 16/183 (8%) Query: 9 IAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADFCEPMPVRL 68 + ++D+ +R LRA N + ++L+ A + I RI+GL GAD P Sbjct: 50 LVVLDLMMPKVDGLSALRDLRARNDDVPVILLTARSDEI-DRIIGLEIGADDYLGKPFSP 108 Query: 69 DILMTYINVILRR---LVP-----------GVWQLDLKARTLRTPSNDALKVNEKEMALL 114 L+ IN +LRR + P G ++L+ + RTL + AL +++ E ALL Sbjct: 109 RELLARINAVLRRRQAVAPAAPEDRDSFSFGPFRLNFRMRTLFRGEH-ALSISDTEFALL 167 Query: 115 RLLAANSHHLASRSDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTLHGEG 174 +LL ++ + +R I + P +R ++ V RLRR E +QT+ G G Sbjct: 168 KLLVTHAMQVLTREHIVELMYGPGSSVSDRGIDVQVWRLRRVLDEDAQRPRYIQTVRGRG 227 Query: 175 YYF 177 Y F Sbjct: 228 YTF 230 >RSc1648 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 240 Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 20/187 (10%) Query: 8 DIAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADFCEPMPVR 67 D+ ++D+ + RRLR N + I+++ A E + RI+GL GAD P P Sbjct: 51 DLLVLDLMMPGEDGLSICRRLRGANDQTPIIMLTAKGEDV-DRIVGLEMGADDYLPKPFN 109 Query: 68 LDILMTYINVILRRLVP----------------GVWQLDLKARTLRTPSNDALKVNEKEM 111 L+ I+ +LRR P G + L+L RTL+ +++ + + E Sbjct: 110 PRELIARIHAVLRRRGPAEIPGAPSETPETFAFGDFVLNLATRTLKK-NDEEITLTTGEF 168 Query: 112 ALLRLLAANSHHLASRSDIAGVF-GKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTL 170 ++L++ A + SR + + G+ Y FD R L+ +SRLR+ + +QT+ Sbjct: 169 SVLKVFARHPRQPLSREKLMEMARGREYEVFD-RSLDVQISRLRKLIEPDASNPRFIQTV 227 Query: 171 HGEGYYF 177 G GY F Sbjct: 228 WGLGYVF 234