BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0003.p (575 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 162 3e-39 STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 99 3e-20 RSp0840 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 98 6e-20 CAC0120 [NT] COG0840 Methyl-accepting chemotaxis protein Cac Clo... 80 1e-14 RSc1950 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 74 1e-12 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 105/283 (37%), Positives = 158/283 (55%), Gaps = 8/283 (2%) Query: 1 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 60 M+ISDM+I VRLGA FA ++ ++ IA VG++ L + +IV++RY +AL QI Sbjct: 1 MRISDMRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQIK- 59 Query: 61 KVNTGARS---LRNAILARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRVNTPKGSELMAA 117 N G ++ L N +L PE++ KY+ ++ +EK + T +G L Sbjct: 60 --NNGYKANGILSNLLLVTTPEQKTKYMSDYAAIRQANAQAYGRLEKLLTTDQGKALFKE 117 Query: 118 LKQTRADYSKERLKVVELIHQQKRDEATAHLFDKAIP-VQDKYFAAVKEMVSFQSSLMDK 176 R+ Y K L+ EA A L+ + +QD+Y+ V +MV Q+ M+ Sbjct: 118 QFDARSAYGASVRKFFALVDADNVQEARA-LYQGDMSRLQDRYYVLVDKMVDHQAGEMEH 176 Query: 177 SAERASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQ 236 A+A ++A M+VL+ +A LL+ ITR+ITRP+N A+ +A AVA G+LT Sbjct: 177 DVSEAAAQGANAKIQMIVLAVLATLLAIATGAFITRTITRPINHAMHLAEAVAQGNLTHL 236 Query: 237 IDATSKDETGVLLGALKSMNDNLHRIVTEVRAGTDTINTASRE 279 ++ ++DE G LL ALK M +NLH IV++VR GTDTI AS E Sbjct: 237 LEVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSE 279 >STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 521 Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 81/293 (27%), Positives = 144/293 (49%), Gaps = 32/293 (10%) Query: 1 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRY---VKVALGTQ 57 M + ++KI +L F IV+M V + + + +L + I+ + Y VK L Sbjct: 1 MFLHNIKIRSKLFMAFGLFIVLMVVSSALSLFSLDRANTGMQNIITNDYPTTVKANL--- 57 Query: 58 ITDKVNTGARSLRNAILARNPEEQKKYLDR-----------MDTYTSQVSEHLAEMEKRV 106 + D N + I+A+ Q LD +D + +++ L E+ Sbjct: 58 LIDNFN-------DFIIAQ----QLMLLDEEGRWSQSSQKELDEISQRITALLDELSSNR 106 Query: 107 NTPKGSELMAALKQTRADYSKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEM 166 + +++ +++ R Y + R ++++ I R A + + + VQ Y V+E+ Sbjct: 107 HDAASQKIITEIREARQQYLESRFRILQDIQSHNRQAAIQEMMTRTVQVQKVYKDKVQEL 166 Query: 167 VSFQSSLMDKSAERASAASSSAINIMLVLSGVAVLLSALCAM--LITRSITRPLNEAVQV 224 ++ Q + M + + + +++ L+ +++ +A C M I RSITRPL+EAV+ Sbjct: 167 IAVQDAQMHNAGVQVEGDFKTNRTLLITLALISI--AAGCVMGWYIVRSITRPLDEAVRF 224 Query: 225 ATAVAAGDLTVQIDATSKDETGVLLGALKSMNDNLHRIVTEVRAGTDTINTAS 277 A A+A GDLT I KDETGVLL AL +M L IV EV+ G+++I+TA+ Sbjct: 225 AEAIADGDLTRHITTDYKDETGVLLQALMAMKTRLLDIVQEVQNGSESISTAA 277 >RSp0840 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 518 Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/188 (39%), Positives = 112/188 (59%), Gaps = 1/188 (0%) Query: 101 EMEKRVNTPKGSELMAALKQTRADYSKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYF 160 +++KR+ T G +L L+ T+ Y R +V+ I+ ++ A L + VQ YF Sbjct: 99 DLQKRIRTQSGQDLFKRLQDTQERYGALRARVIAAINAGDKEAARDLLLTEMPAVQSTYF 158 Query: 161 AAVKEMVSFQSSLMDKSAERASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNE 220 A+ +V++Q+ LM + RA AS A ++LV++ A +L+ + ITRSI RPL++ Sbjct: 159 DALDALVAYQTQLMVDTTGRALTASERAAILLLVMAAAAAVLAVFAGVWITRSIVRPLDQ 218 Query: 221 AVQVATAVAAGDLTVQIDATSKDETGVLLGALKSMNDNLHRIVTEVRAGTDTINTASRES 280 A+ +A VA GDL+ +ID+ + DETG L+ AL+SM NL IV EV TDTI TAS + Sbjct: 219 ALHLADNVAQGDLSTRIDSRAADETGQLVRALESMRANLATIVQEVHESTDTIATASGQ- 277 Query: 281 LPATSTCL 288 + A ST L Sbjct: 278 VAAGSTDL 285 >CAC0120 [NT] COG0840 Methyl-accepting chemotaxis protein Cac Clostridium acetobutylicum Length = 555 Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 142/298 (47%), Gaps = 19/298 (6%) Query: 5 DMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKVNT 64 DMKIS ++ F +I + V G+ NL V+++ E V I++ T Sbjct: 6 DMKISSKILVGFVVIIFISAVSGVFGILNLNKVNNSNTETYEKMLVPTGELVSISNDFGT 65 Query: 65 GARSLRNAILARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRVN-------TPKGSELMAA 117 +R+ ++ E Q +D+MD ++S + ++ +K + T G +++ Sbjct: 66 MRARVRDVVI----ETQ---MDKMDKFSSDFNAASSDFDKVLESFSQTILTADGKTILSE 118 Query: 118 LKQTRADYSKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDKS 177 +K + +Y + + +EL Q K EA A + ++ DK ++K + + L +S Sbjct: 119 IKDAKKEYVQYAQQAMELSKQNKNVEAMAIVRNQLTVAHDKLATSIKNVTDMKKELAKES 178 Query: 178 AERASAASSSAI--NIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTV 235 ++ SA + ++I I+LV+ G L A+L +RSI P+ + +V+ +A G+L V Sbjct: 179 TDQNSATAKTSIIETIILVILGAG--LGVAMAVLTSRSIGNPMKKITEVSEKIADGELDV 236 Query: 236 QIDATSKDETGVLLGALKSMNDNLHRIVTEVRAGTDTINTASRESLPATSTCLHAPSS 293 ++ KDE GVL+ M NL+ +++ + D + S++ + +S L SS Sbjct: 237 ELKTDRKDEIGVLMNTFNKMVSNLNLVMSSMNTAADQVAIGSKQ-VSDSSIMLSQGSS 293 >RSc1950 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 329 Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 82/162 (50%) Query: 117 ALKQTRADYSKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDK 176 A+ + A Y +V+L KRDEA + D+ P+ + A + ++ Sbjct: 7 AIDRVEARYGPVATGIVQLALDGKRDEAIQKMDDECRPLLVELIQATTAYARYTRERQEQ 66 Query: 177 SAERASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQ 236 A ++++ LS AVL++ +LITRSITRP+ +AV VA VA GDL + Sbjct: 67 LVAADEAQYGQQRSLLIALSIAAVLVAIGAGVLITRSITRPIGKAVNVAETVARGDLGSR 126 Query: 237 IDATSKDETGVLLGALKSMNDNLHRIVTEVRAGTDTINTASR 278 IDA DET L AL MN L +IV +VR + +I A+R Sbjct: 127 IDAEGTDETSHRLAALADMNTRLTQIVDKVRDSSGSIAGAAR 168