BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0047.p (492 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0290 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 364 e-100 PA4144 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 186 9e-47 YPO0617 [MU] COG1538 Outer membrane protein Ype Yersinia pestis 71 5e-12 VC1621 [MU] COG1538 Outer membrane protein Vch Vibrio cholerae 68 6e-11 RSc1854 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 61 6e-09 PA2837 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 61 6e-09 >RSp0290 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 488 Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust. Identities = 203/461 (44%), Positives = 294/461 (63%), Gaps = 10/461 (2%) Query: 28 WRDLLAAPLADPLLARPPELDHGKPLPADSEVHPCDQSLPLSDKTLTLSDAIDIALCHHP 87 W L + DPL ARPP LD G LP+D++ PC S L+ L+LS+A+D+ LC++P Sbjct: 31 WGHSLGDLVDDPLFARPPVLDTGAVLPSDAQPIPCPASGDLA-HPLSLSEAVDLGLCNNP 89 Query: 88 QVNAAWARIKIQAAQVGQARSSYLPTINAGVRYQQEKTRQPDSTLFRDSERSGRSEYYTL 147 QV AAWA IKIQA VG+AR++YLPT+ + + PD +S +G + Y L Sbjct: 90 QVKAAWAAIKIQAGAVGEARAAYLPTLTGSLSAMHTRNEFPDRP-EANSTSNGHTVYLGL 148 Query: 148 TWRLLDFGARGANRRLSDALLEGALASHDAALQKTMGTAITAYFEAQTSAARRDARESNE 207 +WRL DFGAR ANR ++ LL A++ HDAALQK + + + AYF+A T A AR Sbjct: 149 SWRLFDFGARSANREAANLLLAAAISGHDAALQKVLASVVGAYFDALTQQAAMQARTEAT 208 Query: 208 TLARQIVEATMKRAARGAAAQTDILQVQTALAKAELEHVRAIGQHERSLVALSIALGMQ- 266 LAR VEAT +R RGAA Q+D LQ +TA AKA+L RA+ ++L AL+ ALG+Q Sbjct: 209 RLARDTVEATERRERRGAAGQSDTLQARTAFAKAQLAEQRAVADFRKALSALAYALGLQP 268 Query: 267 GRAMRFQVLPADPASSPDTASAGMARDLTEWLQAAQQQHPALTAARAQLAASRQKLIAVR 326 G A FQ+ + A+ D+ S G +L WL A +HP + +ARAQ A+ ++ R Sbjct: 269 GTA--FQLAELNDAT--DSQSVG---ELARWLDEAAARHPGIASARAQWDAANARVAKTR 321 Query: 327 SEGLPTLEFNQSYFVNGRPNQGSTGGRTREAVTGLSLNIPVFDGFSSTYKVRDAQAQIDV 386 +EGLPT++ +++ NG PNQG R + GL+L IP+F+GF+ TYK+R A+AQ + Sbjct: 322 AEGLPTIDLTANFYQNGYPNQGLQSTRNNVSTVGLTLTIPLFEGFARTYKIRGAEAQAEQ 381 Query: 387 REAELMETQDQVLGEIARAHADTAAALRNLASSRRLQESAIQALENVQRKYERGLIDTLE 446 EA+ +T++Q+L ++ + HAD AA+ NL +S L SA ++ + +++Y +G D LE Sbjct: 382 SEAQYEDTKNQILSDVIKVHADAVAAVDNLRASDVLIRSAQASMVSSEKRYAKGAADVLE 441 Query: 447 VLNVQAALVDAREERIRTLVEWRSARLRLLASAGEISRTRI 487 +L+ Q+AL+DA +ER+R L EWR+ARLRL+A+AG + R R+ Sbjct: 442 LLSTQSALMDAMQERVRCLSEWRAARLRLMATAGVLGRERL 482 >PA4144 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 471 Score = 186 bits (473), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 166/438 (37%), Positives = 233/438 (53%), Gaps = 34/438 (7%) Query: 61 PCDQSLPLSDKTLTLSDAIDIALCHHPQVNAAWARIKIQAAQVGQARSSYLPTINAGV-- 118 PC P ++ L+L +AI+ LCH PQ AWA K QAAQVG +S+YLP ++ + Sbjct: 46 PCRGGPPPTE--LSLEEAIERILCHDPQTRLAWANAKAQAAQVGIGKSAYLPRLDGRLDA 103 Query: 119 -RYQQEKTRQPDSTLFRDSERSGRSEYYTLTWRLLDFGARGANRRLSDALLEGALASHDA 177 R + + L D R R L+W L DFG R A R + LL A AS DA Sbjct: 104 SRGYSDMDYRDAPYLSGDGHRHRRGASLQLSWVLFDFGRRSAALRNAQQLLLAANASQDA 163 Query: 178 ALQKTMGTAITAYFEAQTSAARRDARESNET--LARQIVEATMKRAARGAAAQTDILQVQ 235 LQ T A AY++A AA+R S + LA Q +EA + GAAA +D LQ Q Sbjct: 164 TLQNTFALAAQAYYDAL--AAQRSLAASRQVAELAAQNLEAADAKYRAGAAALSDRLQAQ 221 Query: 236 TALAKAELEHVRAIGQHERSLVALSIALGMQGRAMRFQVLPADP-------ASSPDTASA 288 TAL++A L VR G ALS ALG+ A+R + P P + PDT Sbjct: 222 TALSQASLAQVRDEG-------ALSNALGVI--ALRMGLAPDTPLRLSGELEAQPDT--- 269 Query: 289 GMARDLTEWLQAAQQQHPALTAARAQLAASRQKLIAVRSEGLPTLEFN----QSYFVNGR 344 G + + E L A+++HPAL AA+A+L A+ + R+ G P+L + +S+ Sbjct: 270 GFVKAIDEMLAEARREHPALLAAQARLKAAAASVEESRAAGRPSLALSANLARSHSDQAM 329 Query: 345 PNQGSTGGRTREAVTGLSLNIPVFDGFSSTYKVRDAQAQIDVREAELMETQDQVLGEIAR 404 G T R R+ GL LNIP+F+GF TY+VR+A A+ + EAEL +T+ QV E+ Sbjct: 330 AFNGDT--RERDRSIGLQLNIPLFEGFERTYQVRNALARREASEAELADTEQQVSLEVWN 387 Query: 405 AHADTAAALRNLASSRRLQESAIQALENVQRKYERGLIDTLEVLNVQAALVDAREERIRT 464 + + R+LA +R L E + Q+LE VQ +Y G+ +E+LN A A ++ IR Sbjct: 388 NYQSLSVETRSLARTRELVEQSRQSLEVVQGRYRSGVGSMIELLNALTAYASAEDQHIRA 447 Query: 465 LVEWRSARLRLLASAGEI 482 L W+++RLRL AS G + Sbjct: 448 LGNWQTSRLRLAASLGRL 465 >YPO0617 [MU] COG1538 Outer membrane protein Ype Yersinia pestis Length = 508 Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 183/398 (45%), Gaps = 31/398 (7%) Query: 69 SDKTLTLSDAIDIALCHHPQVNAAWARIKIQAAQVGQARSSYLPTINAGV--RYQQEKTR 126 SD +L + IDIA +P AW + + A VG + +LP I+A V YQ+ T Sbjct: 80 SDHAYSLPELIDIAQRQNPDTRIAWQQARQAALAVGMGEAIFLPIISASVIGGYQRTTTP 139 Query: 127 QPDSTLF-RDSERSGRSEY--YTLTWRLLDFGARGANRRLSDALLEGALASH---DAALQ 180 P + +D + +G + L W + DFG R A L DA + + A++ + Q Sbjct: 140 LPYAIGNEKDLKTTGSAVIPALALQWLIFDFGQRSA---LLDAAKQTSYAANVTFNGMHQ 196 Query: 181 KTMGTAITAYFEAQTSAARRDARESNETL--ARQIVEATMKRAARGAAAQTDILQVQTAL 238 K + YF Q AA+ ++ + +TL + +I +A +R +G A ++ + + Sbjct: 197 KLIYDVTRTYF--QYGAAQAQSQIAKQTLQNSLKIQDAAEERQKKGIATTVEVALARQQV 254 Query: 239 AKAELEHVRAIGQHERSLVALSIALGMQGRAMRFQVLPADPASSPDTASAGMARDLTEWL 298 A+++L V A G + AL A+G+ ++ + + + PD G++ + + Sbjct: 255 AQSQLRRVVAKGTERDAYQALLGAMGVS-PSLDIKAAYTEDRALPD----GISAPTEKMI 309 Query: 299 QAAQQQHPALTAARAQLAASRQKLIAVRSEGLPTLEF-------NQSYFVNGRPNQGSTG 351 Q A Q P + A+ A + A++ + A ++ LP + + + + G P Sbjct: 310 QLALSQRPDVLASYAAVEAAKAGIKATEADFLPKVYLAGAVAGGDGHFDIQGLPG---IS 366 Query: 352 GRTREAVTGLSLNIPVFDGFSSTYKVRDAQAQIDVREAELMETQDQVLGEIARAHADTAA 411 +T + + +++P++DG +V++A+++ V +TQ+ + EI A + Sbjct: 367 PQTSSSSILVGVSVPLYDGGIRAARVKEAESRAAVAAEGFKKTQELAVREIVVAADTLRS 426 Query: 412 ALRNLASSRRLQESAIQALENVQRKYERGLIDTLEVLN 449 AL + ++ L +++ + + Y G + T+ V N Sbjct: 427 ALESNQAALNLVKTSFISYDAALESYRSG-VGTITVAN 463 >VC1621 [MU] COG1538 Outer membrane protein Vch Vibrio cholerae Length = 445 Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 101/423 (23%), Positives = 184/423 (43%), Gaps = 40/423 (9%) Query: 74 TLSDAIDIALCHHPQVNAAWARIKIQAAQVGQARSSYLPTI--NAGVRYQQEKTRQPDST 131 TL A+ I L +P++ +A+ + K + + +YLP I +AG+ Y E +S+ Sbjct: 31 TLEQAVSITLASNPELKSAFNQFKSREYDAEASSGAYLPKIDLDAGIGY--EAINPAESS 88 Query: 132 LFRDSERSGRSEYYTLTWRLLDFGARGANRRLSDALLEGALASHD----AALQKTMGTAI 187 R+++ + + TLT + D A L+D A A D A M + Sbjct: 89 GNRNTDLTRKDATLTLTQLIWDGSA-----TLNDMDRTAAEAEADRYQLLADASNMALEV 143 Query: 188 TA-YFEAQTSAARRDARESNETLARQIVEATMKRAARGAAAQTDILQVQTALAKAELEHV 246 Y +A ++ E+N + + I KRA G + D+ QV+ LAKA V Sbjct: 144 AKIYLDATKASEILTLSENNLAIHKDIYRDIKKRADSGIGSTADVTQVEARLAKAHSNLV 203 Query: 247 RAIGQHERSLVALSIALGMQGRAMRFQVLP-ADPASSPDTASAGMARDLTEWLQAAQQQH 305 A +G + ++ F P AD + P T L L AQ+ H Sbjct: 204 AAQNNLFDIYTQFRRLVGQEPVSLEF---PRADQNAIPPT--------LENALNMAQENH 252 Query: 306 PALTAARAQLAASRQKLIAVRSEGLPTLEFN--QSYFVNGRPNQGSTGGRTREAVTGLSL 363 P + A+A + A+R + ++ PTL F QS+ R + G G + E L L Sbjct: 253 PVIKVAQADVDAARFQYKQSKAPNYPTLSFEAAQSW----RNDAGGIEGSSDELSAMLRL 308 Query: 364 NIPVFDGFSSTYKVRDAQAQIDVREAELMETQDQVLGEIARAHADTAAALRNLASSRRL- 422 +++G S + + A Q++ R +L E + + E R + +AL ++ Sbjct: 309 RYNLYNGGSDSDRTESAAYQLN-RSKDLREKTFRTVEEGLRL---SWSALDLTLQQKQFL 364 Query: 423 ---QESAIQALENVQRKYERGLIDTLEVLNVQAALVDAREERIRTLVEWRSARLRLLASA 479 +SA + + + +++Y+ G L++LN + L +AR++ + + A+ R++ ++ Sbjct: 365 ADHVDSASKTVVSYRKQYQIGQRTLLDLLNTENELFEARKDYLDARYAEQYAKYRVMNAS 424 Query: 480 GEI 482 G + Sbjct: 425 GNL 427 >RSc1854 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 475 Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 80/282 (28%), Positives = 125/282 (44%), Gaps = 22/282 (7%) Query: 182 TMGTAI-TAYFEAQTSAARRDARESNETLARQIVEATMKRAARGAAAQTDILQVQTALAK 240 T+ +AI ++Y + A RDA E+ + R + +R A G ++ + Q + LA Sbjct: 175 TLASAIASSYADLAGLYAVRDADEAALAVRRHSAQLFTERFASGLETRSGVKQAEALLAS 234 Query: 241 AELEHVR---AIGQHERSLVALSIALGMQGRAMRFQVLPADPASSPDTASAGMARDLTEW 297 AE E +R +IG +L AL A +G +R P+ SP+ A +A +L Sbjct: 235 AEGELLRVDESIGLTRHALAALVGAGPDRGLTIR---RPSVAIRSPEGLPAELAVNLL-- 289 Query: 298 LQAAQQQHPALTAARAQLAASRQKLIAVRSEGLPTLEFNQSYFVN----GRPNQGSTGGR 353 + P + AAR Q A ++ + R+E P + N S F+ G N +G R Sbjct: 290 -----GRRPDVVAARLQAEAQVHRIDSKRAEFYPNV--NLSAFIGFESIGLSNLFKSGSR 342 Query: 354 TREAVTGLSLNIPVFDGFSSTYKVRDAQAQIDVREAELMETQDQVLGEIARAHADTAAAL 413 G ++++P+F+G +++ AQA D A T Q L ++A A A Sbjct: 343 I--GSIGPAVSLPIFNGGRLRGELKRAQASYDEAVANYNRTLTQALQDVADAWLSRKALA 400 Query: 414 RNLASSRRLQESAIQALENVQRKYERGLIDTLEVLNVQAALV 455 LA +A QA +YE GL LEVL Q L+ Sbjct: 401 PRLAKVEEAFRAAEQAYRVTLNRYEGGLASYLEVLTAQDTLL 442 >PA2837 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 479 Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 88/371 (23%), Positives = 163/371 (43%), Gaps = 40/371 (10%) Query: 111 LPTINAGVRYQQEKTRQPDSTLFRDSERSGRSEY------YTLTWRLLDFGARGANRRL- 163 LP+++A YQ+++T + LF S ++G+ Y + +W LDF R R L Sbjct: 100 LPSVDASGNYQRQRT--TSAGLFDPSGKAGKGNYNHALAGFDASWE-LDFWGR-VRRELE 155 Query: 164 -SDALLEGALASHDAALQKTMGTAITAYFEAQTSAARRDARESNETLARQIVEATMKRAA 222 +DA +E + + A Y + + R N AR+ +E T R A Sbjct: 156 AADATVEASENELRDVQVSVLAEAARDYIQLRGEQNRAAIIRDNLETARRSLELTRTRLA 215 Query: 223 RGAAAQTDILQ--VQTALAKAELEHVRAIGQHERSLV-ALSIALGMQGRAMRFQVLPADP 279 G A ++ Q Q A +A L V H LV AL +G ++ ++ PA Sbjct: 216 NGVATDLEVAQALAQVASMEARLPEVEKNQAH---LVNALGYLVGASPGSLLAELGPARA 272 Query: 280 AS-SPDTASAGMARDLTEWLQAAQQQHPALTAARAQLAASRQKLIAVRSEGLPTLEFNQS 338 P + G+ +L Q+ P + A A+L A+ + +++ P + N + Sbjct: 273 IPRPPGSVPVGLPSELA-------QRRPDIRRAEARLHAATASIGVAKADFYPRITLNGN 325 Query: 339 YFVNGRPNQGSTGGRTREAVTGLSLNIPVFDGFSSTYKVRDAQAQIDVREAELMETQDQV 398 + R+ G + ++P+F+G ++R ++++REA+ E Sbjct: 326 FGFESLQLSSLGDWDHRQFAIGPAFSLPIFEG----GRLR---GRLELREAQQQEAAIDY 378 Query: 399 LGEIARAHADTAAALRNLASSRRLQE---SAI----QALENVQRKYERGLIDTLEVLNVQ 451 + RA + A+ + A+++R QE A+ +AL++ + +Y G +D L VL+ Q Sbjct: 379 QRTVLRAWQEVDDAMHDYAANQRRQERLGEAVAQNRRALQSAREQYRAGAVDFLSVLDSQ 438 Query: 452 AALVDAREERI 462 L+D +E+++ Sbjct: 439 RQLLDNQEQQV 449