BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0042.p (264 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO2888 Non COG 126 4e-29 STM2535 Non COG 126 4e-29 sseB Non COG 125 1e-28 ECs3388 Non COG 124 3e-28 ZsseB Non COG 100 3e-21 >YPO2888 Non COG Length = 317 Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 90/260 (34%), Positives = 138/260 (53%), Gaps = 27/260 (10%) Query: 12 LEEALLRAQGDPQARPAFYRMLLDSTVFVRGNPPPDGNREQ---------VQIMRWPGDD 62 LE L A R AF+R+LLD+TV V G+ + V I+ W D Sbjct: 48 LESLLKLAATASIHRTAFFRVLLDATVLVLVGDSEQGSDDGEMSFTTANGVNILHWEKQD 107 Query: 63 GAMMLPMFSSLLEIEQAFDK-DASCVG--------MTVRELFRMCGDGRTIFILFPDSPH 113 G ++P F+S+ ++QA ++ D +G M VR LF M G +F L P S + Sbjct: 108 GESVIPFFTSVEVLQQALEQTDGETIGSEKQPFVAMPVRVLFEMT-QGAHLF-LNPKSEY 165 Query: 114 AKYFVPGEVAHVLQEDNGGV--PVAREVGGGSSVQLGSPAQPPQAMLEALSTLFARHDKV 171 K F P EVA +L+ NGG+ P V S + LG P + P AM++AL LF++ V Sbjct: 166 GKEFWPEEVAMLLK--NGGLVQPAEMVVDKESQILLGQPEEYPSAMVDALIQLFSQRKPV 223 Query: 172 KAAYLAMMHDPAHDPQPALVVG--IDLPASHMERVMREVGPVIAQHAPANTAVDMLRV-E 228 + A+LA+MHD + D +P L++G +D A+ ++++++E G V + HAP VD V E Sbjct: 224 RRAFLALMHDKSVDEKPNLLIGLEVDGTANEVDQLIQEAGNVASDHAPDGGPVDFCLVSE 283 Query: 229 PGNGIADYMLAETKPFYERQ 248 G++ Y+ T+ FY+R+ Sbjct: 284 KERGVSHYLTTHTQAFYQRK 303 >STM2535 Non COG Length = 261 Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 86/263 (32%), Positives = 135/263 (51%), Gaps = 12/263 (4%) Query: 6 SPSLSPLEEALLRAQGDPQARPAFYRMLLDSTVFVRGNPPPDG---NREQVQIMRWPGDD 62 S + + LE L +A +P RPAF+R LL+STV+V G+ + + W +D Sbjct: 5 SETKNELEILLEKAATEPAHRPAFFRTLLESTVWVPGSAAEGEAIVEDSALDLQHWEKED 64 Query: 63 GAMMLPMFSSLLEIEQAFDKDASCVGMTVRELFRMCGDGRTIFILFPDSPHAKYFVPGEV 122 G ++P F+SL ++QA + + + V M R LF M G T+F L P K F+P E+ Sbjct: 65 GTTVIPFFTSLEALQQAVEDEQAFVVMPARTLFEMTL-GETLF-LNAKLPTGKEFMPREI 122 Query: 123 AHVLQEDNGGVPVAREVGGGSSVQLGSPAQPPQAMLEALSTLFARHDKVKAAYLAMMHDP 182 + +L E+ + + GG S+ L A+PP M+++L+TLF VK A+L + + Sbjct: 123 SLLLAEEGSPLSTQEVLEGGESLILSEVAEPPSQMIDSLTTLFKTIKPVKRAFLCAIKEH 182 Query: 183 AHDPQPALVVGIDLPASHMERVMREVGPVIAQHAPANTAVDMLRVEPG-NGIADYMLAET 241 A D QP L++GI+ +E ++ G V P + +D+ +V G GI+ ++ Sbjct: 183 A-DAQPNLLIGIE-ADGEIEEIIHAAGNVATDTLPGDEPIDICQVRKGEQGISHFITEHI 240 Query: 242 KPFYERQQRERVGFFKSLFGGGR 264 PFYER R G F F R Sbjct: 241 APFYER----RWGGFLRDFKQNR 259 >sseB Non COG Length = 261 Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 133/247 (53%), Gaps = 8/247 (3%) Query: 6 SPSLSPLEEALLRAQGDPQARPAFYRMLLDSTVFVRGNPPPDG---NREQVQIMRWPGDD 62 S + + LE+ L +A +P RPAF+R LL+STV+V G + + W +D Sbjct: 5 SETKNELEDLLEKAATEPAHRPAFFRTLLESTVWVPGTAAQGEAVVEDSALDLQHWEKED 64 Query: 63 GAMMLPMFSSLLEIEQAFDKDASCVGMTVRELFRMCGDGRTIFILFPDSPHAKYFVPGEV 122 G ++P F+SL ++QA + + + V M VR LF M G T+F L P K F+P E+ Sbjct: 65 GTSVIPFFTSLEALQQAVEDEQAFVVMPVRTLFEMTL-GETLF-LNAKLPTGKEFMPREI 122 Query: 123 AHVLQEDNGGVPVAREVGGGSSVQLGSPAQPPQAMLEALSTLFARHDKVKAAYLAMMHDP 182 + ++ E+ + + GG S+ L A+PP M+++L+TLF VK A++ + + Sbjct: 123 SLLIGEEGNPLSSQEILEGGESLILSEVAEPPAQMIDSLTTLFKTIKPVKRAFICSIKE- 181 Query: 183 AHDPQPALVVGIDLPASHMERVMREVGPVIAQHAPANTAVDMLRVEPG-NGIADYMLAET 241 + QP L++GI+ +E +++ G V P + +D+ +V+ G GI+ ++ Sbjct: 182 NEEAQPNLLIGIEADGD-IEEIIQATGSVATDTLPGDEPIDICQVKKGEKGISHFITEHI 240 Query: 242 KPFYERQ 248 PFYER+ Sbjct: 241 APFYERR 247 >ECs3388 Non COG Length = 261 Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 133/247 (53%), Gaps = 8/247 (3%) Query: 6 SPSLSPLEEALLRAQGDPQARPAFYRMLLDSTVFVRGNPPPDG---NREQVQIMRWPGDD 62 S + + LE+ L +A +P RPAF+R LL+STV+V G + + W +D Sbjct: 5 SETKNELEDLLEKAATEPAHRPAFFRTLLESTVWVPGTAAQGEAVVEDSALDLQHWEKED 64 Query: 63 GAMMLPMFSSLLEIEQAFDKDASCVGMTVRELFRMCGDGRTIFILFPDSPHAKYFVPGEV 122 G ++P F+SL ++QA + + + V M VR LF M G T+F L P K F+P E+ Sbjct: 65 GTSVIPFFTSLEALQQAVEDEQAFVVMPVRTLFEMTL-GETLF-LNAKLPTGKEFMPREI 122 Query: 123 AHVLQEDNGGVPVAREVGGGSSVQLGSPAQPPQAMLEALSTLFARHDKVKAAYLAMMHDP 182 + ++ E+ + + GG S+ L A+PP M+++L+TLF VK A++ + + Sbjct: 123 SLLIGEEGNPLSSQEILEGGESLILSEVAEPPAQMIDSLTTLFKTIKPVKRAFICSIKE- 181 Query: 183 AHDPQPALVVGIDLPASHMERVMREVGPVIAQHAPANTAVDMLRVEPG-NGIADYMLAET 241 + QP L++GI+ +E +++ G V P + +D+ +V+ G GI+ ++ Sbjct: 182 NEEAQPNLLIGIEADGD-IEEIIQVAGSVATDTLPGDEPIDICQVKKGEKGISHFITEHI 240 Query: 242 KPFYERQ 248 PFYER+ Sbjct: 241 APFYERR 247 >ZsseB Non COG Length = 269 Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 111/213 (52%), Gaps = 9/213 (4%) Query: 53 VQIMRWPGDDGAMMLPMFSSLLEIEQAFDKDASCVGMTVRELFRMCGDGRTIFILFPDSP 112 + + W +DG ++P F+SL ++QA + + + V M VR LF M G T+F L P Sbjct: 63 LDLQHWEKEDGTSVIPFFTSLEALQQAVEDEQAFVVMPVRTLFEMTL-GETLF-LNAKLP 120 Query: 113 HAKYFVPGEVAHVLQEDNGGVPVAREVGGGSSVQLGSPAQPPQAMLEALSTLFARHDKVK 172 K F+P E++ ++ E+ + + GG S+ L A+PP M+++L+TLF VK Sbjct: 121 TGKEFMPREISLLIGEEGNPLSSQEILEGGESLILSEVAEPPAQMIDSLTTLFKTIKPVK 180 Query: 173 AAYLAMMHDPAHDPQPALVVGIDLPASHMERVMREVGPVIAQHAPANTAVDMLRVEPG-N 231 A++ + + + QP L++GI+ +E +++ G V P + +D+ +V+ G Sbjct: 181 RAFICSIKE-NEEAQPNLLIGIEADGD-IEEIIQVAGSVATDTLPGDEPIDICQVKKGEK 238 Query: 232 GIADYMLAETKPFYERQQRERVGFFKSLFGGGR 264 GI+ ++ PFYER R G F F R Sbjct: 239 GISHFITEHIAPFYER----RWGGFLRDFKQNR 267