BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0041.p (189 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2366 [F] COG0717 Deoxycytidine deaminase Rso Ralstonia solana... 370 e-103 NMB0849 [F] COG0717 Deoxycytidine deaminase Nme Neisseria mening... 335 4e-92 NMA1060 [F] COG0717 Deoxycytidine deaminase NmA Neisseria mening... 335 4e-92 PA3480 [F] COG0717 Deoxycytidine deaminase Pae Pseudomonas aerug... 324 7e-89 XF0762 [F] COG0717 Deoxycytidine deaminase Xfa Xylella fastidios... 322 4e-88 CT039 [F] COG0717 Deoxycytidine deaminase Ctr Chlamydia trachomatis 276 1e-74 RC0099 [F] COG0717 Deoxycytidine deaminase Rco Rickettsia conorii 276 1e-74 CPn0392 Non COG 275 3e-74 RP069 [F] COG0717 Deoxycytidine deaminase Rpr Rickettsia prowazekii 274 8e-74 Cj1292 [F] COG0717 Deoxycytidine deaminase Cje Campylobacter jejuni 273 2e-73 >RSc2366 [F] COG0717 Deoxycytidine deaminase Rso Ralstonia solanacearum Length = 188 Score = 370 bits (950), Expect = e-103, Method: Compositional matrix adjust. Identities = 177/189 (93%), Positives = 184/189 (97%), Gaps = 1/189 (0%) Query: 1 MAIKSDKWIRRMAEQEGMIEPYEPGQVRTAADGSKIVSYGTSSYGYDIRCADEFKIFTNI 60 M+IKSDKWIRRMAEQ GMIEP+EPGQVR ADG +IVSYGTSSYGYDIRCADEFKIFTNI Sbjct: 1 MSIKSDKWIRRMAEQHGMIEPFEPGQVR-EADGRRIVSYGTSSYGYDIRCADEFKIFTNI 59 Query: 61 NSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTVEYFRIPRSVLTICLGKSTYARCGI 120 NSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALART+EYFRIPR+VLT+CLGKSTYARCGI Sbjct: 60 NSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTMEYFRIPRTVLTVCLGKSTYARCGI 119 Query: 121 IVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDEVCETSYKDRGGKYQG 180 IVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDE CETSY+DRGGKYQG Sbjct: 120 IVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDEPCETSYRDRGGKYQG 179 Query: 181 QHGVTLPKT 189 QHGVTLPKT Sbjct: 180 QHGVTLPKT 188 >NMB0849 [F] COG0717 Deoxycytidine deaminase Nme Neisseria meningitidis MC58 Length = 188 Score = 335 bits (859), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 159/188 (84%), Positives = 174/188 (92%), Gaps = 1/188 (0%) Query: 1 MAIKSDKWIRRMAEQEGMIEPYEPGQVRTAADGSKIVSYGTSSYGYDIRCADEFKIFTNI 60 M+IKSDKWIRRM+E+ GMI+P+EP Q++ ADG +I+SYGTSSYGYDIRCA+EFKIFTNI Sbjct: 1 MSIKSDKWIRRMSEEFGMIDPFEPNQIK-EADGKRIISYGTSSYGYDIRCANEFKIFTNI 59 Query: 61 NSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTVEYFRIPRSVLTICLGKSTYARCGI 120 NSTIVDPKNFD K+FV + D CIIPPNSFALARTVEYFRIPR+VLT+CLGKSTYARCGI Sbjct: 60 NSTIVDPKNFDPKNFVTVEDDCCIIPPNSFALARTVEYFRIPRNVLTVCLGKSTYARCGI 119 Query: 121 IVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDEVCETSYKDRGGKYQG 180 IVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEG AQVLFFESDE+CETSYKDR GKY G Sbjct: 120 IVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGVAQVLFFESDEICETSYKDRNGKYMG 179 Query: 181 QHGVTLPK 188 Q GVTLPK Sbjct: 180 QTGVTLPK 187 >NMA1060 [F] COG0717 Deoxycytidine deaminase NmA Neisseria meningitidis Z2491 Length = 188 Score = 335 bits (859), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 159/188 (84%), Positives = 174/188 (92%), Gaps = 1/188 (0%) Query: 1 MAIKSDKWIRRMAEQEGMIEPYEPGQVRTAADGSKIVSYGTSSYGYDIRCADEFKIFTNI 60 M+IKSDKWIRRM+E+ GMI+P+EP Q++ ADG +I+SYGTSSYGYDIRCA+EFKIFTNI Sbjct: 1 MSIKSDKWIRRMSEEFGMIDPFEPNQIK-EADGKRIISYGTSSYGYDIRCANEFKIFTNI 59 Query: 61 NSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTVEYFRIPRSVLTICLGKSTYARCGI 120 NSTIVDPKNFD K+FV + D CIIPPNSFALARTVEYFRIPR+VLT+CLGKSTYARCGI Sbjct: 60 NSTIVDPKNFDPKNFVTVEDDCCIIPPNSFALARTVEYFRIPRNVLTVCLGKSTYARCGI 119 Query: 121 IVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDEVCETSYKDRGGKYQG 180 IVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEG AQVLFFESDE+CETSYKDR GKY G Sbjct: 120 IVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGVAQVLFFESDEICETSYKDRNGKYMG 179 Query: 181 QHGVTLPK 188 Q GVTLPK Sbjct: 180 QTGVTLPK 187 >PA3480 [F] COG0717 Deoxycytidine deaminase Pae Pseudomonas aeruginosa Length = 188 Score = 324 bits (830), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 152/188 (80%), Positives = 165/188 (87%), Gaps = 1/188 (0%) Query: 1 MAIKSDKWIRRMAEQEGMIEPYEPGQVRTAADGSKIVSYGTSSYGYDIRCADEFKIFTNI 60 M IKSDKWIRRMA++ GMIEP+ QVR AD S+++SYG SSYGYD+RCA EFK+FTNI Sbjct: 1 MTIKSDKWIRRMAQEHGMIEPFVERQVR-GADDSRVISYGVSSYGYDVRCAAEFKVFTNI 59 Query: 61 NSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTVEYFRIPRSVLTICLGKSTYARCGI 120 +S +VDPKNFDEKSFVD DVCIIPPNSFALARTVEYFRIPR VLTICLGKSTYARCGI Sbjct: 60 HSAVVDPKNFDEKSFVDINSDVCIIPPNSFALARTVEYFRIPRDVLTICLGKSTYARCGI 119 Query: 121 IVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDEVCETSYKDRGGKYQG 180 IVNVTP EPEWEG+VTLEFSNTT LPAKIYA EG AQ+LF +SDE CE SYKDRGGKYQG Sbjct: 120 IVNVTPLEPEWEGHVTLEFSNTTNLPAKIYANEGVAQMLFLQSDEACEVSYKDRGGKYQG 179 Query: 181 QHGVTLPK 188 Q GVTLPK Sbjct: 180 QRGVTLPK 187 >XF0762 [F] COG0717 Deoxycytidine deaminase Xfa Xylella fastidiosa 9a5c Length = 191 Score = 322 bits (824), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 147/191 (76%), Positives = 169/191 (88%), Gaps = 2/191 (1%) Query: 1 MAIKSDKWIRRMAEQEGMIEPYEPGQVRTAADGSKIVSYGTSSYGYDIRCADEFKIFTNI 60 M+IKSD+WIR MA+Q GMI P+EPGQ++ A G +IVSYGTSSYGYD+RC+ EFKIFTNI Sbjct: 1 MSIKSDRWIRHMAQQHGMIAPFEPGQIKQNATGQRIVSYGTSSYGYDVRCSREFKIFTNI 60 Query: 61 NSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTVEYFRIPRSVLTICLGKSTYARCGI 120 NSTIVDPK FD SF+D + DVCIIPPNSFALART+EYFRIPR+VL ICLGKSTYARCGI Sbjct: 61 NSTIVDPKQFDNGSFIDVESDVCIIPPNSFALARTIEYFRIPRNVLVICLGKSTYARCGI 120 Query: 121 IVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFES--DEVCETSYKDRGGKY 178 IVNVTP EPEWEG+VTLEFSNTTPLPA+IYA EG AQ+LF ++ D+VC+TSY+DR GKY Sbjct: 121 IVNVTPLEPEWEGHVTLEFSNTTPLPARIYANEGVAQMLFLQADPDDVCQTSYRDRNGKY 180 Query: 179 QGQHGVTLPKT 189 QGQ GVTLP+T Sbjct: 181 QGQTGVTLPRT 191 >CT039 [F] COG0717 Deoxycytidine deaminase Ctr Chlamydia trachomatis Length = 190 Score = 276 bits (707), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 126/188 (67%), Positives = 153/188 (81%), Gaps = 1/188 (0%) Query: 1 MAIKSDKWIRRMAEQEGMIEPYEPGQVRTAAD-GSKIVSYGTSSYGYDIRCADEFKIFTN 59 M IK D WIR+MA +EGMIEP+ QV+ + G K++SYG SSYGYD+R + EFK+FTN Sbjct: 1 MGIKEDNWIRKMAIEEGMIEPFADSQVKLHPETGEKLISYGLSSYGYDLRISREFKVFTN 60 Query: 60 INSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTVEYFRIPRSVLTICLGKSTYARCG 119 + +++VDPK F E + + DVCIIPPNSFALAR+VEYFRIPR+VLT+C+GKSTYARCG Sbjct: 61 VYNSLVDPKCFTEDALISIVDDVCIIPPNSFALARSVEYFRIPRNVLTVCIGKSTYARCG 120 Query: 120 IIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDEVCETSYKDRGGKYQ 179 +IVNVTPFEPEWEGYVT+E SNTTPLPAK+YA EG AQVLFFE D C+ SY +R GKYQ Sbjct: 121 LIVNVTPFEPEWEGYVTIEISNTTPLPAKVYANEGIAQVLFFEGDATCDVSYAERQGKYQ 180 Query: 180 GQHGVTLP 187 Q G+T+P Sbjct: 181 KQQGITIP 188 >RC0099 [F] COG0717 Deoxycytidine deaminase Rco Rickettsia conorii Length = 190 Score = 276 bits (707), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 132/189 (69%), Positives = 148/189 (78%), Gaps = 1/189 (0%) Query: 1 MAIKSDKWIRRMAEQEGMIEPYEPGQVRTAADGSKIVSYGTSSYGYDIRCADEFKIFTNI 60 MAI SDKWI+ MI P+ QVR + KI+SYG SSYGYD R ++EFKIFTNI Sbjct: 3 MAIMSDKWIKEAVINHSMIRPFAEKQVR-VHNKEKIISYGLSSYGYDARVSNEFKIFTNI 61 Query: 61 NSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTVEYFRIPRSVLTICLGKSTYARCGI 120 NST VDPKNF E + VD + DVCIIPPNSFAL RT+EYF+IPR VL IC+GKSTYARCGI Sbjct: 62 NSTTVDPKNFSEYNLVDREVDVCIIPPNSFALGRTIEYFKIPRDVLVICVGKSTYARCGI 121 Query: 121 IVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDEVCETSYKDRGGKYQG 180 IVNVTP EPEWEG+VTLEFSNTTPLPAKIYA EG Q LF +SD++C+TSY DR GKY Sbjct: 122 IVNVTPLEPEWEGHVTLEFSNTTPLPAKIYANEGACQFLFLKSDQICDTSYADRQGKYMK 181 Query: 181 QHGVTLPKT 189 Q GVTLP T Sbjct: 182 QVGVTLPLT 190 >CPn0392 Non COG Length = 190 Score = 275 bits (704), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 128/188 (68%), Positives = 150/188 (79%), Gaps = 1/188 (0%) Query: 1 MAIKSDKWIRRMAEQEGMIEPYEPGQVRTAAD-GSKIVSYGTSSYGYDIRCADEFKIFTN 59 M+IK DKWIR MA MI P+ GQV + G K++SYG SSYGYD+R + EFK+FTN Sbjct: 1 MSIKEDKWIREMALNADMIHPFVNGQVNVNEETGEKLISYGLSSYGYDLRLSREFKVFTN 60 Query: 60 INSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTVEYFRIPRSVLTICLGKSTYARCG 119 + +++VDPK F E F+ DVCI+PPNSFALAR+VEYFRIPR+VLT+C+GKSTYARCG Sbjct: 61 VYNSVVDPKCFTEDIFISITDDVCIVPPNSFALARSVEYFRIPRNVLTMCIGKSTYARCG 120 Query: 120 IIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDEVCETSYKDRGGKYQ 179 IIVNVTPFEPEWEG+VT+E SNTTPLPAKIYA EG AQVLFFES CE SY DR GKYQ Sbjct: 121 IIVNVTPFEPEWEGHVTIEISNTTPLPAKIYANEGIAQVLFFESSTTCEVSYADRKGKYQ 180 Query: 180 GQHGVTLP 187 Q G+T+P Sbjct: 181 KQQGITVP 188 >RP069 [F] COG0717 Deoxycytidine deaminase Rpr Rickettsia prowazekii Length = 188 Score = 274 bits (700), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 130/189 (68%), Positives = 148/189 (78%), Gaps = 1/189 (0%) Query: 1 MAIKSDKWIRRMAEQEGMIEPYEPGQVRTAADGSKIVSYGTSSYGYDIRCADEFKIFTNI 60 MAI SDKWI+ + MI P+ QVR + KI+SYG SSYGYD R ++EFKIFTNI Sbjct: 1 MAIMSDKWIKDAVMNQNMIRPFAAKQVR-VHNKEKIISYGLSSYGYDARVSNEFKIFTNI 59 Query: 61 NSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTVEYFRIPRSVLTICLGKSTYARCGI 120 NST VDPKNF E + VD + D CIIPPNSFAL RT+EYF+IPR VL IC+GKSTYARCGI Sbjct: 60 NSTTVDPKNFSEYNLVDREVDACIIPPNSFALGRTIEYFKIPRDVLVICVGKSTYARCGI 119 Query: 121 IVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDEVCETSYKDRGGKYQG 180 IVNVTP EPEWEG+VTLEFSNTTPLPAKIYA EG Q LF +SD++C+TSY +R GKY Sbjct: 120 IVNVTPLEPEWEGHVTLEFSNTTPLPAKIYANEGACQFLFLKSDQICDTSYAERQGKYMK 179 Query: 181 QHGVTLPKT 189 Q GVTLP T Sbjct: 180 QVGVTLPLT 188 >Cj1292 [F] COG0717 Deoxycytidine deaminase Cje Campylobacter jejuni Length = 186 Score = 273 bits (697), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 126/188 (67%), Positives = 153/188 (81%), Gaps = 5/188 (2%) Query: 1 MAIKSDKWIRRMAEQEGMIEPYEPGQVRTAADGSKIVSYGTSSYGYDIRCADEFKIFTNI 60 M +K+D WIR+MA + MIEP+ + G +VSYG SSYGYDIR EFKIFTN+ Sbjct: 1 MGLKADNWIRKMALEHKMIEPFCEANI-----GKGVVSYGLSSYGYDIRVGREFKIFTNV 55 Query: 61 NSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTVEYFRIPRSVLTICLGKSTYARCGI 120 NST+VDPKNF E++ VDF+GDVCI+P NSFALART+EYF++P +VL ICLGKSTYARCGI Sbjct: 56 NSTVVDPKNFVEENVVDFEGDVCIVPANSFALARTIEYFKMPDNVLAICLGKSTYARCGI 115 Query: 121 IVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDEVCETSYKDRGGKYQG 180 IVNVTPFEP +EG++T+E SNTTPLPAKIYA EG AQVLF + DE C+T+YKD+ GKYQ Sbjct: 116 IVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDEKCDTTYKDKKGKYQA 175 Query: 181 QHGVTLPK 188 Q G+TLP+ Sbjct: 176 QTGITLPR 183