BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0011.p (497 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0952 [LKJ] COG0513 Superfamily II DNA and RNA helicases Rso R... 535 e-152 NMB1368 [LKJ] COG0513 Superfamily II DNA and RNA helicases Nme N... 439 e-123 NMA1580 [LKJ] COG0513 Superfamily II DNA and RNA helicases NmA N... 438 e-122 RSc0539 [LKJ] COG0513 Superfamily II DNA and RNA helicases Rso R... 344 3e-94 STM0820 [LKJ] COG0513 Superfamily II DNA and RNA helicases Sty S... 340 3e-93 rhlE [LKJ] COG0513 Superfamily II DNA and RNA helicases Eco Esch... 340 6e-93 ZrhlE [LKJ] COG0513 Superfamily II DNA and RNA helicases EcZ Esc... 340 6e-93 ECs0875 [LKJ] COG0513 Superfamily II DNA and RNA helicases Ecs E... 340 6e-93 PA0428 [LKJ] COG0513 Superfamily II DNA and RNA helicases Pae Ps... 337 3e-92 VCA0204 [LKJ] COG0513 Superfamily II DNA and RNA helicases Vch V... 328 1e-89 >RSc0952 [LKJ] COG0513 Superfamily II DNA and RNA helicases Rso Ralstonia solanacearum Length = 608 Score = 535 bits (1379), Expect = e-152, Method: Compositional matrix adjust. Identities = 289/511 (56%), Positives = 361/511 (70%), Gaps = 42/511 (8%) Query: 6 LGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSLHQLAD 65 LGL+ I +AL E YT PTPVQ +AIPA +SG+DLLV+SQTGSGKTAAFMLP++ ++++ Sbjct: 35 LGLDERIARALGELNYTQPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFMLPAIQRISE 94 Query: 66 LPPAPQAART--PNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYGAYM 123 P PQ R P Q R +G RPR PA+P +LVLTPTRELALQVTTAT +YG ++ Sbjct: 95 -QPEPQRPRADGPQQ-----RVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHL 148 Query: 124 RRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEADRM 183 RR+ SILGGMPYPKQ+ +L+R P+I++ATPGRL+DH++SG+ID S L +LV DEADRM Sbjct: 149 RRIVCASILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRM 208 Query: 184 LDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHENIM 243 LDMGF DDIE IV ATPA+RQ ++FSAT+D + +A+R+ P I+IA++ +I Sbjct: 209 LDMGFADDIEAIVGATPASRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARIDQSHIE 268 Query: 244 QRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHGDMH 303 +R+HF DDLSHK +LLDHLLRD ++ QA++FTATKRDAD++A+RL GF+A ALHGDMH Sbjct: 269 ERLHFTDDLSHKQQLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMH 328 Query: 304 QGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTGRAG 363 QGARNRTL +LRRGQ+R+LVATDVAARGIDVP ITHV N+DLPK AEDYVHRIGRTGRAG Sbjct: 329 QGARNRTLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAG 388 Query: 364 RNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKKSAAPRSPRKPGGWRPGDGRS 423 R+G+AI+LVNH + Q +RIERF + I VVEG EPK+S PRS Sbjct: 389 RSGIAINLVNHGDTFQWRRIERFVDRRIDATVVEGLEPKRSPKPRS-------------- 434 Query: 424 NNGPRYGAGNREGGGHREGGFGGNREGGYNR----------EG---RSFGGAKPGNGPRR 470 GPR G G+ G + G R+G R EG RSFGG + PRR Sbjct: 435 -GGPRAGGDRGGYRGNGGGNWRGQRDGYAARTGNGGNGGNSEGRFQRSFGGDRESFAPRR 493 Query: 471 E--GGGGGGYKG----NGGGFRADGPRRSYG 495 + G G GY+G + G PR+SYG Sbjct: 494 DDRGDRGTGYQGGQQRDWGNRDNAAPRQSYG 524 >NMB1368 [LKJ] COG0513 Superfamily II DNA and RNA helicases Nme Neisseria meningitidis MC58 Length = 462 Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust. Identities = 245/510 (48%), Positives = 318/510 (62%), Gaps = 63/510 (12%) Query: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 + F L L+ +I+ A++ GY SPTP+Q +AIP A+ G+D++ S+QTGSGKTAAF+LP+L Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62 Query: 61 HQLADLPPAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYG 120 +L R E+P P+ LVLTPTRELA QV Y Sbjct: 63 QKLT--------------------KRSEKP---GKGPRALVLTPTRELAAQVEKNALAYA 99 Query: 121 AYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 MR R VSI+GG + Q + LS+ +++VATPGRL+D M+SGK+DF +L++L+LDEA Sbjct: 100 KNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEA 159 Query: 181 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHE 240 DRMLDMGFIDDIE IV ATP+ RQT+LFSAT DG VG +A+++T +P I++ + + Sbjct: 160 DRMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGK 219 Query: 241 NIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHG 300 I +++ + DD+ HKNRLLDH+LRD +IDQ VIFT+TK + IAD L GFAA LHG Sbjct: 220 -IEEQLLYCDDMRHKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHG 278 Query: 301 DMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTG 360 DM QG RNRTL LR+G+ ++LVATDVAARGIDVP ITHV NYDLPK AEDYVHRIGRTG Sbjct: 279 DMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTG 338 Query: 361 RAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEP---KKSA-------APRSP 410 RAGR G+AI+ E ++V +IE++ + +P +EG EP +KSA Sbjct: 339 RAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRKRKSAGGKPKGKGGWGD 398 Query: 411 RKPGGWRPGDGRSNNGPRYGAGNREGGGHR--EGGFGGNREG-GYNREGRSFGGAKPGNG 467 RK GGWR G H+ + GFGG G G+ +EG G K Sbjct: 399 RKSGGWR-------------------GDHKPSKEGFGGKTRGEGFKKEGFKRDGFK---- 435 Query: 468 PRREGGGGGGYKGNGGGFRADGPRRSYGDR 497 + G G G + G F G RR Y DR Sbjct: 436 --KTGEGFKGKRKAGDSFAGKGERR-YKDR 462 >NMA1580 [LKJ] COG0513 Superfamily II DNA and RNA helicases NmA Neisseria meningitidis Z2491 Length = 462 Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust. Identities = 244/510 (47%), Positives = 318/510 (62%), Gaps = 63/510 (12%) Query: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 + F L L+ +I+ A++ GY SPTP+Q +AIP A+ G+D++ S+QTGSGKTAAF+LP+L Sbjct: 3 IKFADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTL 62 Query: 61 HQLADLPPAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYG 120 +L R E+P P+ LVLTPTRELA QV Y Sbjct: 63 QRLT--------------------KRSEKP---GKGPRALVLTPTRELAAQVEKNALAYA 99 Query: 121 AYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 MR R VSI+GG + Q + LS+ +++VATPGRL+D M+SGK+DF++L++L+LDEA Sbjct: 100 KNMRWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEA 159 Query: 181 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHE 240 DRMLDMGFIDDIE IV ATP RQT+LFSAT DG VG +A+++T +P I++ + + Sbjct: 160 DRMLDMGFIDDIETIVEATPEDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGK 219 Query: 241 NIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHG 300 I +++ + DD+ HKNRLLDH+LRD IDQ VIFT+TK + IAD L GFAA LHG Sbjct: 220 -IEEQLLYCDDMRHKNRLLDHILRDADIDQCVIFTSTKAMTEVIADELYEKGFAANCLHG 278 Query: 301 DMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTG 360 DM QG RNRTL LR+G+ ++LVATDVAARGIDVP ITHV NYDLPK AEDYVHRIGRTG Sbjct: 279 DMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTG 338 Query: 361 RAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEP---KKSA-------APRSP 410 RAGR G+AI+ E ++V +IE++ + +P +EG EP +KSA Sbjct: 339 RAGRTGIAITFAEVNEYVKVHKIEKYINRKLPELTIEGMEPTRKRKSAGGKPKGKGGWGD 398 Query: 411 RKPGGWRPGDGRSNNGPRYGAGNREGGGHR--EGGFGGNREG-GYNREGRSFGGAKPGNG 467 RK GGWR G H+ + GFGG G G+ +EG +G Sbjct: 399 RKSGGWR-------------------GDHKPSKEGFGGKTRGEGFKKEGFK------RDG 433 Query: 468 PRREGGGGGGYKGNGGGFRADGPRRSYGDR 497 ++ G G G + G F G RR Y DR Sbjct: 434 FKKTGEGFKGKRKAGDSFAGKGERR-YKDR 462 >RSc0539 [LKJ] COG0513 Superfamily II DNA and RNA helicases Rso Ralstonia solanacearum Length = 540 Score = 344 bits (882), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 199/440 (45%), Positives = 265/440 (60%), Gaps = 29/440 (6%) Query: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 M+F LGL+ +++A+ E GY PTP+Q +AIPA + G DLL +QTG+GKTA F LP L Sbjct: 1 MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60 Query: 61 HQLADLPPAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYG 120 H+L+ + P +TP+ R RA LVLTPTRELA QV + YG Sbjct: 61 HRLSAV--QPNKVQTPHGMRYPIRA--------------LVLTPTRELAAQVEESVRAYG 104 Query: 121 AYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 Y+ ++ + + GG+ Q+ L R +I+VATPGRL+DH+ ID S +++LVLDEA Sbjct: 105 KYLP-LKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEA 163 Query: 181 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHE 240 DRMLDMGFI DI KI+ P RQ +LFSAT + +A R+ + P I++A +T E Sbjct: 164 DRMLDMGFIHDIRKILNILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAE 223 Query: 241 NIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHG 300 + QR++ VD K LL L+ D Q ++FT TK A+ +A++L G A A+HG Sbjct: 224 TVEQRIYPVDR-ERKRELLAKLVSDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHG 282 Query: 301 DMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTG 360 + Q AR R L+ + G +R+LVATD+AARGID+ + HV N+DLP EDYVHRIGRTG Sbjct: 283 NKSQSARTRALSEFKAGTLRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTG 342 Query: 361 RAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKKSAAPR-------SPRKP 413 RAG G AISLV E ++ IER K+ +P V+ GFEP + AP S R P Sbjct: 343 RAGAQGEAISLVCVDEHGLLRDIERLIKRELPRTVLAGFEPDPTIAPEPIPNGRNSARAP 402 Query: 414 GGWRPGDGRSNNGPRYGAGN 433 R G GRS PR AGN Sbjct: 403 ---RQGGGRSQP-PRQAAGN 418 >STM0820 [LKJ] COG0513 Superfamily II DNA and RNA helicases Sty Salmonella typhimurium LT2 Length = 454 Score = 340 bits (873), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 180/404 (44%), Positives = 248/404 (61%), Gaps = 23/404 (5%) Query: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 M+F++LGLNP I++A+ E GY PTP+Q++AIPA + G+DL+ S+QTG+GKTA F LP L Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 HQLADLPPAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYG 120 L P A+G RP + L+LTPTRELA Q+ Y Sbjct: 61 QHLITHQP---------------HAKGRRP------VRALILTPTRELAAQIGENVRDYS 99 Query: 121 AYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 Y+ +R + + GG+ QM L ++LVATPGRL+D + Q++ILVLDEA Sbjct: 100 KYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEA 158 Query: 181 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHE 240 DRMLDMGFI DI +++A PA RQ +LFSAT + +A+++ NPL I++A +T E Sbjct: 159 DRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASE 218 Query: 241 NIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHG 300 + Q VHFVD K LL ++ + Q ++FT TK A+ +A++LN G +AA+HG Sbjct: 219 QVTQHVHFVDK-KRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHG 277 Query: 301 DMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTG 360 + QGAR R L + G +R+LVATD+AARG+D+ + HV NY+LP EDYVHRIGRTG Sbjct: 278 NKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTG 337 Query: 361 RAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKKS 404 RA G A+SLV E ++ IE+ K+ IP G+EP S Sbjct: 338 RAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPS 381 >rhlE [LKJ] COG0513 Superfamily II DNA and RNA helicases Eco Escherichia coli K12 Length = 454 Score = 340 bits (871), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 179/404 (44%), Positives = 252/404 (62%), Gaps = 23/404 (5%) Query: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 M+F++LGL+P I++A+ E GY PTP+Q++AIPA + G+DL+ S+QTG+GKTA F LP L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 HQLADLPPAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYG 120 L R P+ A+G RP + L+LTPTRELA Q+ Y Sbjct: 61 QHLI--------TRQPH-------AKGRRP------VRALILTPTRELAAQIGENVRDYS 99 Query: 121 AYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 Y+ +R + + GG+ QM L ++LVATPGRL+D + Q++ILVLDEA Sbjct: 100 KYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEA 158 Query: 181 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHE 240 DRMLDMGFI DI +++ PA RQ +LFSAT + +A+++ +NPL I++A +T + Sbjct: 159 DRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASD 218 Query: 241 NIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHG 300 + Q VHFVD K LL H++ + Q ++FT TK A+ +A++LN G +AA+HG Sbjct: 219 QVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHG 277 Query: 301 DMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTG 360 + QGAR R L + G +R+LVATD+AARG+D+ + HV NY+LP EDYVHRIGRTG Sbjct: 278 NKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTG 337 Query: 361 RAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKKS 404 RA G A+SLV E ++ IE+ K+ IP + G+EP S Sbjct: 338 RAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPS 381 >ZrhlE [LKJ] COG0513 Superfamily II DNA and RNA helicases EcZ Escherichia coli O157:H7 EDL933 Length = 455 Score = 340 bits (871), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 179/404 (44%), Positives = 252/404 (62%), Gaps = 23/404 (5%) Query: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 M+F++LGL+P I++A+ E GY PTP+Q++AIPA + G+DL+ S+QTG+GKTA F LP L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 HQLADLPPAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYG 120 L R P+ A+G RP + L+LTPTRELA Q+ Y Sbjct: 61 QHLI--------TRQPH-------AKGRRP------VRALILTPTRELAAQIGENVRDYS 99 Query: 121 AYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 Y+ +R + + GG+ QM L ++LVATPGRL+D + Q++ILVLDEA Sbjct: 100 KYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEA 158 Query: 181 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHE 240 DRMLDMGFI DI +++ PA RQ +LFSAT + +A+++ +NPL I++A +T + Sbjct: 159 DRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASD 218 Query: 241 NIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHG 300 + Q VHFVD K LL H++ + Q ++FT TK A+ +A++LN G +AA+HG Sbjct: 219 QVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHG 277 Query: 301 DMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTG 360 + QGAR R L + G +R+LVATD+AARG+D+ + HV NY+LP EDYVHRIGRTG Sbjct: 278 NKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTG 337 Query: 361 RAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKKS 404 RA G A+SLV E ++ IE+ K+ IP + G+EP S Sbjct: 338 RAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPS 381 >ECs0875 [LKJ] COG0513 Superfamily II DNA and RNA helicases Ecs Escherichia coli O157:H7 Length = 455 Score = 340 bits (871), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 179/404 (44%), Positives = 252/404 (62%), Gaps = 23/404 (5%) Query: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 M+F++LGL+P I++A+ E GY PTP+Q++AIPA + G+DL+ S+QTG+GKTA F LP L Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 HQLADLPPAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYG 120 L R P+ A+G RP + L+LTPTRELA Q+ Y Sbjct: 61 QHLI--------TRQPH-------AKGRRP------VRALILTPTRELAAQIGENVRDYS 99 Query: 121 AYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 Y+ +R + + GG+ QM L ++LVATPGRL+D + Q++ILVLDEA Sbjct: 100 KYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEA 158 Query: 181 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHE 240 DRMLDMGFI DI +++ PA RQ +LFSAT + +A+++ +NPL I++A +T + Sbjct: 159 DRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASD 218 Query: 241 NIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHG 300 + Q VHFVD K LL H++ + Q ++FT TK A+ +A++LN G +AA+HG Sbjct: 219 QVTQHVHFVDK-KRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHG 277 Query: 301 DMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTG 360 + QGAR R L + G +R+LVATD+AARG+D+ + HV NY+LP EDYVHRIGRTG Sbjct: 278 NKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTG 337 Query: 361 RAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKKS 404 RA G A+SLV E ++ IE+ K+ IP + G+EP S Sbjct: 338 RAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPS 381 >PA0428 [LKJ] COG0513 Superfamily II DNA and RNA helicases Pae Pseudomonas aeruginosa Length = 639 Score = 337 bits (865), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 202/482 (41%), Positives = 286/482 (59%), Gaps = 42/482 (8%) Query: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 M+F +LGL+ ++ +A+ AGY+ PTPVQ++AIPA + G+DL+V++QTG+GKT F LP L Sbjct: 1 MSFSSLGLSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60 Query: 61 HQLADLPPAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYG 120 +L P A P++E R+ P Q ++LVLTPTRELA QV D + Sbjct: 61 ERL--FP-----AGHPDREH----------RHGPRQARVLVLTPTRELAAQVH---DSFK 100 Query: 121 AYMRRVRVVS--ILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLD 178 Y R + + S I GG+ Q+Q L++ ++LVA PGRL+D K+D S ++ILVLD Sbjct: 101 VYARDLPLNSTCIFGGVGMNPQIQALAKGVDVLVACPGRLLDLAGQNKVDLSHVEILVLD 160 Query: 179 EADRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTR 238 EADRMLDMGFI D++K++A P RQ +LFSAT + ++A ++ +NP I++ +T Sbjct: 161 EADRMLDMGFIHDVKKVLAKLPPKRQNLLFSATFSKDIVDLANKLLHNPERIEVTPPNTT 220 Query: 239 HENIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAAL 298 E I QRV F K LL HL+ + +Q ++FT TK A+ +A+ L G AAA+ Sbjct: 221 VERIEQRV-FRLPAPQKRALLAHLVTVGAWEQVLVFTRTKHGANRLAEYLTKHGLPAAAI 279 Query: 299 HGDMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGR 358 HG+ Q AR + L + VR+LVATD+AARG+D+ + HV NY+LP EDYVHRIGR Sbjct: 280 HGNKSQNARTKALADFKANDVRILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGR 339 Query: 359 TGRAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPK-----------KSAAP 407 TGRAGR+G AISLV E +K IE+ T+Q IP +GF+P+ + A Sbjct: 340 TGRAGRSGEAISLVAPDEEKLLKAIEKMTRQRIPDGDAQGFDPEAVLPEVAQPEPREAPQ 399 Query: 408 RSPRKPGGWR------PGDGRSNNGPRYGAGNREGGGHREGGFGGNREGGYNREGRSFGG 461 + PR+ R P D +++N P + G + G R GG N+E R G Sbjct: 400 KQPRRDKERRSSRERKPKDAQASN-PDSNVAAAQDGTEKPAG-KRRRRGGKNKENREAGQ 457 Query: 462 AK 463 A+ Sbjct: 458 AQ 459 >VCA0204 [LKJ] COG0513 Superfamily II DNA and RNA helicases Vch Vibrio cholerae Length = 451 Score = 328 bits (842), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 175/401 (43%), Positives = 249/401 (62%), Gaps = 25/401 (6%) Query: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 M F +LGL+ I+KA+ E GY +P+P+Q +AIPA ++G+D++ ++QTG+GKTA F LP L Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60 Query: 61 HQLADLPPAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYG 120 LA + P+ + Q + L+LTPTRELA Q+ YG Sbjct: 61 ELLA-----------------------KGPKVRANQVRALILTPTRELAAQIQDNVMLYG 97 Query: 121 AYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 ++ ++ + GG+ QMQ + + +ILVATPGRL+D + F QL+ILVLDEA Sbjct: 98 RHLP-LKSAVVFGGVKINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEA 156 Query: 181 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHE 240 DRMLDMGFI DI KI+ P RQ +LFSAT + +AK + NNP+ I ++ +++ Sbjct: 157 DRMLDMGFIRDIHKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTAR 216 Query: 241 NIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHG 300 + Q + + D+ K +L L+++ + Q ++F TK A+ +A LN G AAA+HG Sbjct: 217 TVEQCI-YPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHG 275 Query: 301 DMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTG 360 + QGAR R L + G+VR+LVATD+AARGID+P + V N++LPK AEDYVHRIGRTG Sbjct: 276 NKSQGARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTG 335 Query: 361 RAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEP 401 RAG G AISLV+ E ++ IER T+ +P + GFEP Sbjct: 336 RAGEVGKAISLVSAIEAPELFAIERLTQALLPRVNLAGFEP 376