BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0002.p (146 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1513 [L] COG0328 Ribonuclease HI Rso Ralstonia solanacearum 219 1e-57 PA1815 [L] COG0328 Ribonuclease HI Pae Pseudomonas aeruginosa 216 1e-56 CC3365 [L] COG0328 Ribonuclease HI Ccr Caulobacter vibrioides 211 3e-55 mlr7504 [L] COG0328 Ribonuclease HI Mlo Mesorhizobium loti 199 2e-51 NMB1618 [L] COG0328 Ribonuclease HI Nme Neisseria meningitidis MC58 197 5e-51 SMc00018 [L] COG0328 Ribonuclease HI Sme Sinorhizobium meliloti 197 7e-51 BMEI1457 [L] COG0328 Ribonuclease HI Bme Brucella melitensis 196 1e-50 NMA1817 [L] COG0328 Ribonuclease HI NmA Neisseria meningitidis Z... 196 1e-50 AGc1417 [L] COG0328 Ribonuclease HI Atu Agrobacterium tumefacien... 196 2e-50 rnhA [L] COG0328 Ribonuclease HI Eco Escherichia coli K12 186 1e-47 >RSc1513 [L] COG0328 Ribonuclease HI Rso Ralstonia solanacearum Length = 151 Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 103/141 (73%), Positives = 116/141 (82%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 M +V +YSDGACKGNPG GGWG +LV+GG EKE+FGGE TTNNRMELMAVI+A ALKR Sbjct: 1 MQEVTVYSDGACKGNPGLGGWGTVLVSGGHEKELFGGEAVTTNNRMELMAVIEAFRALKR 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PC V V+TDSQYVQKGISEW+ GWKARGWKTA K+PVKN DLW+ LD H+V W WV Sbjct: 61 PCRVKVYTDSQYVQKGISEWLAGWKARGWKTADKKPVKNDDLWRTLDELVVTHEVSWHWV 120 Query: 124 RGHNGHAGNERADQLANRGVE 144 +GH GH GNERAD LAN+GVE Sbjct: 121 KGHAGHPGNERADALANKGVE 141 >PA1815 [L] COG0328 Ribonuclease HI Pae Pseudomonas aeruginosa Length = 148 Score = 216 bits (549), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 101/146 (69%), Positives = 120/146 (82%) Query: 1 LKSMDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNA 60 + ++V IY+DGACKGNPGRGGWGALL+ G E+E++GGEP+TTNNRMELMA IQAL A Sbjct: 1 MTDKEQVVIYTDGACKGNPGRGGWGALLLYKGAERELWGGEPDTTNNRMELMAAIQALAA 60 Query: 61 LKRPCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEW 120 LKR C + + TDS+YV +GI+EW+ WK RGWKTASK+PVKNADLWQALD +HQVEW Sbjct: 61 LKRSCPIRLITDSEYVMRGITEWLPNWKKRGWKTASKQPVKNADLWQALDEQVARHQVEW 120 Query: 121 RWVRGHNGHAGNERADQLANRGVESI 146 +WVRGH G GNERADQLANRGV + Sbjct: 121 QWVRGHTGDPGNERADQLANRGVAEL 146 >CC3365 [L] COG0328 Ribonuclease HI Ccr Caulobacter vibrioides Length = 149 Score = 211 bits (538), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 101/138 (73%), Positives = 111/138 (80%) Query: 6 KVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKRPC 65 KV IY+DGACKGNPG GGWGA+L G K+KEI GGEP TTNNRMELMA IQAL L RPC Sbjct: 4 KVTIYTDGACKGNPGPGGWGAILFYGDKKKEICGGEPGTTNNRMELMAAIQALELLNRPC 63 Query: 66 EVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWVRG 125 V +HTDSQYV KGI EWI GWKARGWKTA K PVKN DLW+ LDAA+ +H V+WRWV+G Sbjct: 64 VVELHTDSQYVMKGIQEWIRGWKARGWKTADKSPVKNDDLWKRLDAARARHDVDWRWVKG 123 Query: 126 HNGHAGNERADQLANRGV 143 H GH NERAD LAN G+ Sbjct: 124 HAGHPLNERADALANEGL 141 >mlr7504 [L] COG0328 Ribonuclease HI Mlo Mesorhizobium loti Length = 177 Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 91/138 (65%), Positives = 108/138 (78%) Query: 6 KVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKRPC 65 +VEI++DGAC GNPG GGWGA+L G KE+ GGE TTNNRMEL+A I ALNALK PC Sbjct: 4 QVEIFTDGACSGNPGPGGWGAILRFNGTTKELSGGEAETTNNRMELLAAISALNALKEPC 63 Query: 66 EVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWVRG 125 V +HTDS+YV GIS+WIHGWK GWKTA K+PVKN +LWQALD A ++H+V W WV+G Sbjct: 64 TVELHTDSKYVMDGISKWIHGWKKNGWKTADKKPVKNGELWQALDEANRRHKVTWNWVKG 123 Query: 126 HNGHAGNERADQLANRGV 143 H GH NERAD+LA G+ Sbjct: 124 HAGHTENERADELAREGM 141 >NMB1618 [L] COG0328 Ribonuclease HI Nme Neisseria meningitidis MC58 Length = 145 Score = 197 bits (502), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 92/136 (67%), Positives = 106/136 (77%) Query: 7 VEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKRPCE 66 V +Y+DGACKGNPG GGWG L+ G EKE+FGGE TTNNRMEL AVI+ L +LKR C Sbjct: 5 VYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTNNRMELTAVIEGLKSLKRRCT 64 Query: 67 VVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWVRGH 126 V++ TDSQYV+ G+ WIHGWK GWKTASK+PVKN DLW+ LDA +HQV W WV+GH Sbjct: 65 VIICTDSQYVKNGMENWIHGWKRNGWKTASKQPVKNDDLWKELDALVGRHQVSWTWVKGH 124 Query: 127 NGHAGNERADQLANRG 142 GHA NERAD LANRG Sbjct: 125 AGHAENERADDLANRG 140 >SMc00018 [L] COG0328 Ribonuclease HI Sme Sinorhizobium meliloti Length = 153 Score = 197 bits (500), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 91/143 (63%), Positives = 110/143 (76%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 M V I++DGAC GNPG GGWGA+L G EKE+ GGE TTNNRMEL+A I ALNAL++ Sbjct: 1 MKHVHIFTDGACSGNPGPGGWGAVLRYGDVEKEMSGGEAETTNNRMELLAAISALNALRQ 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PCEV +HTDS+YV GIS+WIHGWK GWKT ++PVKN +LWQALD A+ +H V W WV Sbjct: 61 PCEVDLHTDSKYVMDGISKWIHGWKRNGWKTGDRKPVKNGELWQALDEARNRHNVTWHWV 120 Query: 124 RGHNGHAGNERADQLANRGVESI 146 +GH GH NERAD+LA +G+E Sbjct: 121 KGHAGHPENERADELARKGMEPF 143 >BMEI1457 [L] COG0328 Ribonuclease HI Bme Brucella melitensis Length = 154 Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 93/143 (65%), Positives = 111/143 (77%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 M ++E Y+DGAC GNPG GGWGALL G EKE+ GGE TTNNRMELMA I AL+ALK Sbjct: 1 MKRIEAYTDGACSGNPGPGGWGALLRWNGNEKELKGGEAETTNNRMELMAAISALSALKE 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PCEV ++TDS YV+ GIS WI GWK GWKTA+K+PVKNA+LWQALD A++ H+V W W+ Sbjct: 61 PCEVDLYTDSVYVRDGISGWIEGWKRNGWKTAAKKPVKNAELWQALDEARKAHKVTWHWI 120 Query: 124 RGHNGHAGNERADQLANRGVESI 146 +GH GH NERAD+LA G+E Sbjct: 121 KGHAGHPENERADELARAGMEPF 143 >NMA1817 [L] COG0328 Ribonuclease HI NmA Neisseria meningitidis Z2491 Length = 145 Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 91/136 (66%), Positives = 106/136 (77%) Query: 7 VEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKRPCE 66 V +Y+DGACKGNPG GGWG L+ G EKE+FGGE TTNNRMEL AVI+ L +LKR C Sbjct: 5 VYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTNNRMELTAVIEGLKSLKRRCT 64 Query: 67 VVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWVRGH 126 V++ TDSQYV+ G+ WIHGWK GWKTA+K+PVKN DLW+ LDA +HQV W WV+GH Sbjct: 65 VIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDALVGRHQVSWTWVKGH 124 Query: 127 NGHAGNERADQLANRG 142 GHA NERAD LANRG Sbjct: 125 AGHAENERADDLANRG 140 >AGc1417 [L] COG0328 Ribonuclease HI Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 146 Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 90/143 (62%), Positives = 113/143 (79%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 M V+I++DGAC GNPG GGWGA+L G EKE+ GGE +TTNNRMEL+A I ALNALK Sbjct: 1 MKHVDIFTDGACSGNPGPGGWGAVLRYGETEKELSGGEADTTNNRMELLAAISALNALKS 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PCEV ++TDS YV+ GI++WI GWK +GWKTA +PVKN +LWQAL+AAQ++H+V WV Sbjct: 61 PCEVDLYTDSAYVKDGITKWIFGWKKKGWKTADNKPVKNVELWQALEAAQERHKVTLHWV 120 Query: 124 RGHNGHAGNERADQLANRGVESI 146 +GH GH NERAD+LA +G+E Sbjct: 121 KGHAGHPENERADELARKGMEPF 143 >rnhA [L] COG0328 Ribonuclease HI Eco Escherichia coli K12 Length = 155 Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 86/136 (63%), Positives = 105/136 (77%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 + +VEI++DG+C GNPG GG+GA+L G+EK G TTNNRMELMA I AL ALK Sbjct: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 CEV++ TDSQYV++GI++WIH WK RGWKTA K+PVKN DLWQ LDAA QHQ++W WV Sbjct: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 Query: 124 RGHNGHAGNERADQLA 139 +GH GH NER D+LA Sbjct: 122 KGHAGHPENERCDELA 137