BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0030.p (247 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1617 [O] COG2360 Leu/Phe-tRNA-protein transferase Rso Ralston... 268 9e-72 PA2617 [O] COG2360 Leu/Phe-tRNA-protein transferase Pae Pseudomo... 224 2e-58 XF1446 [O] COG2360 Leu/Phe-tRNA-protein transferase Xfa Xylella ... 213 3e-55 STM0955 [O] COG2360 Leu/Phe-tRNA-protein transferase Sty Salmone... 201 1e-51 Zaat [O] COG2360 Leu/Phe-tRNA-protein transferase EcZ Escherichi... 192 5e-49 aat [O] COG2360 Leu/Phe-tRNA-protein transferase Eco Escherichia... 192 6e-49 ECs0970 [O] COG2360 Leu/Phe-tRNA-protein transferase Ecs Escheri... 192 7e-49 YPO1371 [O] COG2360 Leu/Phe-tRNA-protein transferase Ype Yersini... 188 9e-48 NMB0206 [O] COG2360 Leu/Phe-tRNA-protein transferase Nme Neisser... 171 1e-42 NMA0063 [O] COG2360 Leu/Phe-tRNA-protein transferase NmA Neisser... 165 9e-41 >RSc1617 [O] COG2360 Leu/Phe-tRNA-protein transferase Rso Ralstonia solanacearum Length = 248 Score = 268 bits (685), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 139/235 (59%), Positives = 161/235 (68%), Gaps = 8/235 (3%) Query: 1 MIAWLDLDTPFPDVSRAL---KDPPGLLAAGADLSPARLLEAYRHGIFPWFSEGQPILWW 57 MIAWLD PFP V RAL + PGLLAA ADLSP RLL AYR GIFPW+++GQP+LWW Sbjct: 1 MIAWLDPHDPFPPVDRALGPDSEAPGLLAASADLSPQRLLIAYRQGIFPWYAQGQPVLWW 60 Query: 58 STDPRMVLRTDQFVVSDSLKKTLRRIERSRQGDGLWQVSFDTAFEQVMQGCAGPRR-HEH 116 STDPRMVLR + F VS + +KTLRR+ D W++ D AF VM CA R +H Sbjct: 61 STDPRMVLRPEDFRVSTTFRKTLRRV----LDDPTWEIRIDHAFRDVMVDCATTARPGQH 116 Query: 117 GTWISPDIMQGYLGLHLAGYAHSAEVWLNGELVGGAYGVSIGRMFYGESMFARVSDASKV 176 GTWI+ D++Q Y LH GYAHS E W G VGG YGV++G MFYGESMFA +DASK+ Sbjct: 117 GTWITEDVIQAYTALHRRGYAHSVETWHGGRRVGGLYGVALGHMFYGESMFAHRTDASKI 176 Query: 177 ALAHLVFFLRSHGVEMIDCQQETSHLASLGARPIARSEFLRHLRAAIQWPQIRGW 231 ALA L FL S GV MIDCQQET HLASLG P+ R+ FL H+R A P I W Sbjct: 177 ALAALCAFLGSRGVAMIDCQQETEHLASLGGAPVPRAAFLAHVREAASAPAIVPW 231 >PA2617 [O] COG2360 Leu/Phe-tRNA-protein transferase Pae Pseudomonas aeruginosa Length = 226 Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 114/221 (51%), Positives = 145/221 (65%), Gaps = 9/221 (4%) Query: 1 MIAWLD-LDTPFPDVSRALKDPPGLLAAGADLSPARLLEAYRHGIFPWFSEGQPILWWST 59 M+ WL D FP + +AL++P GLLAAG DL+P RL+ AYRHG FPW+ +GQPILWWS Sbjct: 1 MLTWLSRTDFDFPPLDKALQEPNGLLAAGGDLNPQRLVAAYRHGCFPWYQDGQPILWWSP 60 Query: 60 DPRMVLRTDQFVVSDSLKKTLRRIERSRQGDGLWQVSFDTAFEQVMQGCAGPRRHEHGTW 119 DPR VL D+ VS SL K LR+ ++V+F+ F V+Q CA PR + GTW Sbjct: 61 DPRTVLFPDELHVSRSLAKCLRQQR--------FEVTFNRDFRAVIQACAAPRNYADGTW 112 Query: 120 ISPDIMQGYLGLHLAGYAHSAEVWLNGELVGGAYGVSIGRMFYGESMFARVSDASKVALA 179 I+ + Y LHL G AHS EVW +LVGG YG+++GR+F+GESMF+R +ASKV Sbjct: 113 ITTPMQLAYQELHLRGIAHSVEVWQERQLVGGLYGLAMGRLFFGESMFSRADNASKVGFV 172 Query: 180 HLVFFLRSHGVEMIDCQQETSHLASLGARPIARSEFLRHLR 220 LV LR G +IDCQ T HL SLGAR I+R EF +L+ Sbjct: 173 TLVRHLRDAGFVLIDCQMPTRHLHSLGARAISRGEFADYLQ 213 >XF1446 [O] COG2360 Leu/Phe-tRNA-protein transferase Xfa Xylella fastidiosa 9a5c Length = 243 Score = 213 bits (542), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 109/217 (50%), Positives = 138/217 (63%), Gaps = 9/217 (4%) Query: 8 DTPFPDVSRALKDPPGLLAAGADLSPARLLEAYRHGIFPWFSEGQPILWWSTDPRMVLRT 67 +TPFP AL++P GLLA G DL+P RLL AYR+GIFPWF+EGQP LWWS DPR V R+ Sbjct: 13 NTPFPPAEYALREPNGLLAIGGDLTPQRLLAAYRNGIFPWFTEGQPPLWWSPDPRTVFRS 72 Query: 68 DQFVVSDSLKKTLRRIERSRQGDGLWQVSFDTAFEQVMQGCAG-PRRHEHGTWISPDIMQ 126 D +S ++ LR W V DT F V+ CA PRR + GTWI+ ++ + Sbjct: 73 DSIHLSRRFRRNLR--------TSTWTVRADTMFAAVIDACASTPRRGQDGTWITANMRE 124 Query: 127 GYLGLHLAGYAHSAEVWLNGELVGGAYGVSIGRMFYGESMFARVSDASKVALAHLVFFLR 186 YL LH YAHS EV+ LVGG YGV++GRMF+GESMF+ + ASK+ALA L FL Sbjct: 125 AYLTLHQHSYAHSVEVFDGTMLVGGIYGVALGRMFFGESMFSTRNGASKIALASLAHFLH 184 Query: 187 SHGVEMIDCQQETSHLASLGARPIARSEFLRHLRAAI 223 +H +ID Q E HL +LGA R +FL ++R I Sbjct: 185 THSAPLIDAQVENQHLLNLGAERWPRKDFLAYVRRLI 221 >STM0955 [O] COG2360 Leu/Phe-tRNA-protein transferase Sty Salmonella typhimurium LT2 Length = 234 Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 114/228 (50%), Positives = 141/228 (61%), Gaps = 11/228 (4%) Query: 11 FPDVSRALKDPPGLLAAGADLSPARLLEAYRHGIFPWFSEGQPILWWSTDPRMVLRTDQF 70 FP AL++P GLLA G DLSPARLL AY+HGIFPWFS G PILWWS DPR VL ++F Sbjct: 13 FPSPEGALREPNGLLALGGDLSPARLLMAYQHGIFPWFSPGDPILWWSPDPRAVLWPEKF 72 Query: 71 VVSDSLKKTLRRIERSRQGDGLWQVSFDTAFEQVMQGCAGPRRHEHGTWISPDIMQGYLG 130 +S S+K+ ++V+ + AF++V+ GCA R + GTWI+ I + Y Sbjct: 73 HLSRSMKRF--------HNASPYRVTLNYAFDRVIDGCANHR--DEGTWITRGIEEAYRR 122 Query: 131 LHLAGYAHSAEVWLNGELVGGAYGVSIGRMFYGESMFARVSDASKVALAHLVFFLRSHGV 190 LH G+AHS EVW + ELVGG YGVS G +F GESMF+R +ASK AL HG Sbjct: 123 LHELGHAHSIEVWRDRELVGGMYGVSQGALFCGESMFSRQENASKTALLVFCAEFTRHGG 182 Query: 191 EMIDCQQETSHLASLGARPIARSEFLRHLRAAIQWP-QIRGWAPLDLL 237 ++IDCQ SH ASLGA I R ++L HL A Q P R W P L Sbjct: 183 KLIDCQVLNSHTASLGAIEIPRRDYLDHLAALRQQPLASRFWVPRTLF 230 >Zaat [O] COG2360 Leu/Phe-tRNA-protein transferase EcZ Escherichia coli O157:H7 EDL933 Length = 234 Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 104/210 (49%), Positives = 132/210 (62%), Gaps = 10/210 (4%) Query: 11 FPDVSRALKDPPGLLAAGADLSPARLLEAYRHGIFPWFSEGQPILWWSTDPRMVLRTDQF 70 FP AL++P GLLA G DLSPARLL AY+ GIFPWFS G PILWWS DPR VL + Sbjct: 13 FPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESL 72 Query: 71 VVSDSLKKTLRRIERSRQGDGLWQVSFDTAFEQVMQGCAGPRRHEHGTWISPDIMQGYLG 130 +S S+K+ +R ++V+ + AF QV++GCA R E GTWI+ +++ Y Sbjct: 73 HISRSMKRFHKR--------SPYRVTMNYAFGQVIEGCASDR--EEGTWITRGVVEAYHR 122 Query: 131 LHLAGYAHSAEVWLNGELVGGAYGVSIGRMFYGESMFARVSDASKVALAHLVFFLRSHGV 190 LH G+AHS EVW ELVGG YGV+ G +F GESMF+R+ +ASK AL HG Sbjct: 123 LHELGHAHSIEVWREBELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGG 182 Query: 191 EMIDCQQETSHLASLGARPIARSEFLRHLR 220 ++IDCQ H ASLGA I R +L +L Sbjct: 183 KLIDCQVLNDHTASLGACEIPRRNYLNYLN 212 >aat [O] COG2360 Leu/Phe-tRNA-protein transferase Eco Escherichia coli K12 Length = 234 Score = 192 bits (488), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 104/210 (49%), Positives = 133/210 (63%), Gaps = 10/210 (4%) Query: 11 FPDVSRALKDPPGLLAAGADLSPARLLEAYRHGIFPWFSEGQPILWWSTDPRMVLRTDQF 70 FP AL++P GLLA G DLSPARLL AY+ GIFPWFS G PILWWS DPR VL + Sbjct: 13 FPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESL 72 Query: 71 VVSDSLKKTLRRIERSRQGDGLWQVSFDTAFEQVMQGCAGPRRHEHGTWISPDIMQGYLG 130 +S S+K+ +R ++V+ + AF QV++GCA R E GTWI+ +++ Y Sbjct: 73 HISRSMKRFHKR--------SPYRVTMNYAFGQVIEGCASDR--EEGTWITRGVVEAYHR 122 Query: 131 LHLAGYAHSAEVWLNGELVGGAYGVSIGRMFYGESMFARVSDASKVALAHLVFFLRSHGV 190 LH G+AHS EVW ELVGG YGV+ G +F GESMF+R+ +ASK AL HG Sbjct: 123 LHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGG 182 Query: 191 EMIDCQQETSHLASLGARPIARSEFLRHLR 220 ++IDCQ H ASLGA I R ++L +L Sbjct: 183 KLIDCQVLNDHTASLGACEIPRRDYLNYLN 212 >ECs0970 [O] COG2360 Leu/Phe-tRNA-protein transferase Ecs Escherichia coli O157:H7 Length = 234 Score = 192 bits (487), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 104/210 (49%), Positives = 132/210 (62%), Gaps = 10/210 (4%) Query: 11 FPDVSRALKDPPGLLAAGADLSPARLLEAYRHGIFPWFSEGQPILWWSTDPRMVLRTDQF 70 FP AL++P GLLA G DLSPARLL AY+ GIFPWFS G PILWWS DPR VL + Sbjct: 13 FPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESL 72 Query: 71 VVSDSLKKTLRRIERSRQGDGLWQVSFDTAFEQVMQGCAGPRRHEHGTWISPDIMQGYLG 130 +S S+K+ +R ++V+ + AF QV++GCA R E GTWI+ +++ Y Sbjct: 73 HISRSMKRFHKR--------SPYRVTMNYAFGQVIEGCASDR--EEGTWITRGVVEAYHR 122 Query: 131 LHLAGYAHSAEVWLNGELVGGAYGVSIGRMFYGESMFARVSDASKVALAHLVFFLRSHGV 190 LH G+AHS EVW ELVGG YGV+ G +F GESMF+R+ +ASK AL HG Sbjct: 123 LHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGG 182 Query: 191 EMIDCQQETSHLASLGARPIARSEFLRHLR 220 ++IDCQ H ASLGA I R +L +L Sbjct: 183 KLIDCQVLNDHTASLGACEIPRRNYLNYLN 212 >YPO1371 [O] COG2360 Leu/Phe-tRNA-protein transferase Ype Yersinia pestis Length = 236 Score = 188 bits (478), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 99/209 (47%), Positives = 128/209 (61%), Gaps = 10/209 (4%) Query: 11 FPDVSRALKDPPGLLAAGADLSPARLLEAYRHGIFPWFSEGQPILWWSTDPRMVLRTDQF 70 FP AL++P GLLA G DL+ RLL AY+ GIFPWF+ G+ ILWWS DPR VL + Sbjct: 13 FPSPELALREPNGLLALGGDLTAPRLLAAYQRGIFPWFNPGEMILWWSPDPRAVLFPEDL 72 Query: 71 VVSDSLKKTLRRIERSRQGDGLWQVSFDTAFEQVMQGCAGPRRHEHGTWISPDIMQGYLG 130 +S S+++ +R ++ + + AF V+ CA R + GTWI D+ Q Y Sbjct: 73 HISRSMRRFIRHCP--------YRFTLNHAFADVISACATER--DEGTWIGRDVQQAYCQ 122 Query: 131 LHLAGYAHSAEVWLNGELVGGAYGVSIGRMFYGESMFARVSDASKVALAHLVFFLRSHGV 190 LH G+AHS EVWL ELVGG YGV++G +F GESMF+R +ASK AL HG Sbjct: 123 LHALGHAHSLEVWLENELVGGLYGVAVGAVFCGESMFSRADNASKSALMVFCHHFTQHGG 182 Query: 191 EMIDCQQETSHLASLGARPIARSEFLRHL 219 E+IDCQ +H ASLGA I R+ FL+ L Sbjct: 183 ELIDCQVLNAHTASLGAVEIPRNFFLQQL 211 >NMB0206 [O] COG2360 Leu/Phe-tRNA-protein transferase Nme Neisseria meningitidis MC58 Length = 241 Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 96/216 (44%), Positives = 125/216 (57%), Gaps = 14/216 (6%) Query: 11 FPDVSRALKDPPGLLAAGADLSPARLLEAYRHGIFPWFSEGQPILWWSTDPRMVLRTDQF 70 FPD + AL GL+ DL RLLEAYR+G+FPWFS W++ PR V+ D+ Sbjct: 13 FPDPAYALARCDGLVGVSGDLDAGRLLEAYRNGVFPWFSRDGWFFWYAVGPRAVVFPDRL 72 Query: 71 VVSDSLKKTLRRIERSRQGDGLWQVSFDTAFEQVMQGCAGPRR-HEHGTWISPDIMQGYL 129 + SL KTLR +G ++V+ + F +V+ CA R ++ GTWI+P+ YL Sbjct: 73 HIPRSLAKTLR--------NGSYRVAVNGCFAEVVAHCAAAARPNQDGTWIAPEFQTAYL 124 Query: 130 GLHLAGYAHSAEVWLNGE-----LVGGAYGVSIGRMFYGESMFARVSDASKVALAHLVFF 184 LH GYAHS E E L GG YGV IGR+FYGESMFA DASK+A A V F Sbjct: 125 KLHEMGYAHSFECHYPDESGETRLAGGFYGVQIGRVFYGESMFALQPDASKIAFACAVPF 184 Query: 185 LRSHGVEMIDCQQETSHLASLGARPIARSEFLRHLR 220 L GVE+IDCQQ+T H+ G+ + ++F LR Sbjct: 185 LADLGVELIDCQQDTEHMRRFGSELLPFADFAERLR 220 >NMA0063 [O] COG2360 Leu/Phe-tRNA-protein transferase NmA Neisseria meningitidis Z2491 Length = 241 Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 95/219 (43%), Positives = 127/219 (57%), Gaps = 14/219 (6%) Query: 8 DTPFPDVSRALKDPPGLLAAGADLSPARLLEAYRHGIFPWFSEGQPILWWSTDPRMVLRT 67 + FPD + AL GL+ DL RLLEAY++G+FPWF W++ PR V+ Sbjct: 10 NYAFPDPAYALAWCDGLVGVSGDLDAGRLLEAYQNGVFPWFLRDGWFFWYAVGPRAVIVP 69 Query: 68 DQFVVSDSLKKTLRRIERSRQGDGLWQVSFDTAFEQVMQGCAGPRR-HEHGTWISPDIMQ 126 ++ V SL KTLR +G ++V+ + F +V+ CA R ++ GTWI+P+ Sbjct: 70 ERLHVPCSLAKTLR--------NGSYRVAVNGCFAEVVAHCAAAARPNQDGTWIAPEFQT 121 Query: 127 GYLGLHLAGYAHSAEVWL---NGE--LVGGAYGVSIGRMFYGESMFARVSDASKVALAHL 181 YL LH GYAHS E NG+ L GG YGV IGR+FYGESMFA DASK+A A Sbjct: 122 AYLKLHEMGYAHSFECHYPDENGKTRLAGGFYGVQIGRVFYGESMFALQPDASKIAFACA 181 Query: 182 VFFLRSHGVEMIDCQQETSHLASLGARPIARSEFLRHLR 220 V FL GVE+IDCQQ+T H+ G+ + ++F LR Sbjct: 182 VPFLADLGVELIDCQQDTEHMRRFGSELLPFADFAERLR 220