BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0029.p (242 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1616 [O] COG2935 Putative arginyl-tRNA Rso Ralstonia solanace... 359 3e-99 PA2618 [O] COG2935 Putative arginyl-tRNA Pae Pseudomonas aeruginosa 210 2e-54 BMEI1199 [O] COG2935 Putative arginyl-tRNA Bme Brucella melitensis 184 1e-46 CC1572 Non COG 176 3e-44 XF1018 [O] COG2935 Putative arginyl-tRNA Xfa Xylella fastidiosa ... 172 5e-43 AGc2146 [O] COG2935 Putative arginyl-tRNA Atu Agrobacterium tume... 166 3e-41 mll8364 [O] COG2935 Putative arginyl-tRNA Mlo Mesorhizobium loti 164 1e-40 SMc01764 [O] COG2935 Putative arginyl-tRNA Sme Sinorhizobium mel... 164 2e-40 VC1736 [O] COG2935 Putative arginyl-tRNA Vch Vibrio cholerae 130 2e-30 Cj1035c [O] COG2935 Putative arginyl-tRNA Cje Campylobacter jejuni 121 2e-27 >RSc1616 [O] COG2935 Putative arginyl-tRNA Rso Ralstonia solanacearum Length = 257 Score = 359 bits (922), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 171/246 (69%), Positives = 200/246 (81%), Gaps = 5/246 (2%) Query: 1 MTHLKDLPFSTLQFYATAPYPCSYLDDQQARSQVATPSHLINADVYSELVKTGFRRSGIF 60 M+ LK+LP S LQFYATAPY CSYL+ + ARSQVATP+HLINADVYS+LV+ GFRRSGIF Sbjct: 1 MSKLKELPLSALQFYATAPYACSYLEGRLARSQVATPAHLINADVYSKLVRAGFRRSGIF 60 Query: 61 TYRPYCDGCHACTPVRIRVADFQRNRSQRRAWERNRGLQTLVTNLTYAHEHYELYLRYQC 120 TYRP+CD CHACTP R+ VA F +R+QRRA ER++ L+ LV LTY EHY+LYL YQ Sbjct: 61 TYRPHCDDCHACTPCRVVVAPFVPSRAQRRAAERHQSLEALVAPLTYVEEHYQLYLLYQS 120 Query: 121 ARHAGGGMDQDSRDQYAQFLLQSKVNTRLVEFR-----EADGTLRMVSIIDVLNDGLSSV 175 RHAGGGMD DSRDQY QFLLQS+VN+RLVEFR E+ G LRMVS+IDVL DGLSSV Sbjct: 121 VRHAGGGMDHDSRDQYEQFLLQSRVNSRLVEFREPPESESAGRLRMVSMIDVLEDGLSSV 180 Query: 176 YTFFDPDLPTASFGTYNILWQIEQARQLDMPYVYLGYWIKESQKMAYKTNFQPLEALYDG 235 YTF+DP AS+GTYN+LWQI QA+ L++PYVYLGYWI++S+KMAYK FQPLE L +G Sbjct: 181 YTFYDPLERKASYGTYNVLWQIAQAQALELPYVYLGYWIEQSRKMAYKAQFQPLELLVNG 240 Query: 236 EWSPLE 241 EW E Sbjct: 241 EWRRFE 246 >PA2618 [O] COG2935 Putative arginyl-tRNA Pae Pseudomonas aeruginosa Length = 235 Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 107/232 (46%), Positives = 142/232 (61%), Gaps = 1/232 (0%) Query: 9 FSTLQFYATAPYPCSYLDDQQARSQVATPSHLINADVYSELVKTGFRRSGIFTYRPYCDG 68 + L+FYAT P+PCSYL ++QA + PS ++ +Y+ L + GFRRSG YRP+C Sbjct: 4 LARLKFYATQPHPCSYLPEEQATTLFLDPSQPMDTQLYASLSEVGFRRSGDHLYRPHCQH 63 Query: 69 CHACTPVRIRVADFQRNRSQRRAWERNRGLQTLVTNLTYAHEHYELYLRYQCARHAGGGM 128 C AC RI VADF NR QRR +RN LQ + ++ E+Y+LY RY RHA G M Sbjct: 64 CTACIAARIPVADFSPNRQQRRILKRNAELQVIRKRPSFNEEYYDLYRRYIEQRHADGDM 123 Query: 129 DQDSRDQYAQFLLQSKVNTRLVEFREADGTLRMVSIIDVLNDGLSSVYTFFDPDLPTASF 188 SRDQ+A FL++ EFR G L +++ DVL +GLS+VYTF+DPD S Sbjct: 124 YPPSRDQFATFLVRDLPFCCFFEFR-LHGRLLAIAVTDVLPNGLSAVYTFYDPDEEQRSL 182 Query: 189 GTYNILWQIEQARQLDMPYVYLGYWIKESQKMAYKTNFQPLEALYDGEWSPL 240 G Y ILWQI + +L + VYLGYWIK +KM YKT ++P+E + W L Sbjct: 183 GRYAILWQIAETERLGLQAVYLGYWIKNCRKMNYKTQYRPIELFVNQRWVAL 234 >BMEI1199 [O] COG2935 Putative arginyl-tRNA Bme Brucella melitensis Length = 249 Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 104/255 (40%), Positives = 138/255 (54%), Gaps = 19/255 (7%) Query: 1 MTHLKDLPFSTLQFYATAPYPCSYLDDQQARSQVATPSHLIN---ADVYSELVKTGFRRS 57 MTH P + QF+ TAP PC YL+ QQ R +HL+ ++ L + GFRRS Sbjct: 1 MTHQ---PQQSPQFFLTAPSPCPYLEGQQERKVF---THLVGDKANEINDLLTQGGFRRS 54 Query: 58 GIFTYRPYCDGCHACTPVRIRVADFQRNRSQRRAWERNRGLQTLVTNLTYAHEHYELYLR 117 YRP C+ C AC VRI +F+ R+ RR W +NR L V + E Y L+ Sbjct: 55 QNIAYRPACEVCRACISVRILAGEFEMTRNMRRVWSQNRDLIGRVHKAQPSTEQYALFRD 114 Query: 118 YQCARHAGGGMDQDSRDQYAQFLLQSKVNTRLVEFR----------EADGTLRMVSIIDV 167 Y ARH GGM + YA + + VNT+++E+R + DG L V++ DV Sbjct: 115 YLDARHRSGGMSDMTVLDYAMMIEDTHVNTQIIEYRRRGPDSFMSAKGDGELIAVALTDV 174 Query: 168 LNDGLSSVYTFFDPDLPTASFGTYNILWQIEQARQLDMPYVYLGYWIKESQKMAYKTNFQ 227 + DGLS VY+FF P + S GTY IL IE+AR +P+VYLGYW++ S+KM YK F Sbjct: 175 MADGLSMVYSFFSPHMQERSLGTYMILDHIERARAAGLPHVYLGYWVEGSRKMQYKIRFT 234 Query: 228 PLEALYDGEWSPLEG 242 P E L W EG Sbjct: 235 PQEHLGPRGWQRFEG 249 >CC1572 Non COG Length = 279 Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 98/240 (40%), Positives = 130/240 (54%), Gaps = 11/240 (4%) Query: 7 LPFSTLQFYATAPYPCSYLDDQQARSQVATPSHLINAD---VYSELVKTGFRRSGIFTYR 63 P L+F+ TAP PC YL ++ R A HL +D V L + GFRRS YR Sbjct: 5 FPTRQLRFFLTAPTPCPYLPGREERKVFA---HLPLSDGPIVNDSLTQVGFRRSQNIAYR 61 Query: 64 PYCDGCHACTPVRIRVADFQRNRSQRRAWERNRGLQTLVTNLTYAHEHYELYLRYQCARH 123 P C+ C AC R ++ +RS+R+ RN L+ + E +EL RY RH Sbjct: 62 PACETCRACQSARAPATEYILSRSERKILGRNDDLERHLVEAEATLEQFELLRRYLLTRH 121 Query: 124 AGGGMDQDSRDQYAQFLLQSKVNTRLVEFRE-----ADGTLRMVSIIDVLNDGLSSVYTF 178 A GGM + + Y + + V T L+E+R G L ++DVL DGLS VY+F Sbjct: 122 ADGGMAEMTWPDYVAMVEDTAVRTHLIEYRRKSLDRGPGDLVACVLVDVLADGLSLVYSF 181 Query: 179 FDPDLPTASFGTYNILWQIEQARQLDMPYVYLGYWIKESQKMAYKTNFQPLEALYDGEWS 238 ++PD P S G++ IL I QA+Q +PYVYLGYW+ S+KMAYK F PLE L G WS Sbjct: 182 YEPDQPRRSLGSFIILDHIVQAQQNALPYVYLGYWVPGSEKMAYKARFSPLEILKPGGWS 241 >XF1018 [O] COG2935 Putative arginyl-tRNA Xfa Xylella fastidiosa 9a5c Length = 254 Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 98/240 (40%), Positives = 127/240 (52%), Gaps = 7/240 (2%) Query: 8 PFSTLQFYATAPYPCSYLDDQQARSQVATPSHLINADVYSELVKTGFRRSGIFTYRPYCD 67 P LQ + T +PC Y D+ A V P+ +Y + + GFRRSG YRP+C+ Sbjct: 7 PHDDLQLFKTNLHPCGYWPDRWASDLVMDPNDPRLGAIYPQALAWGFRRSGNLLYRPHCE 66 Query: 68 GCHACTPVRIRVADFQRNRSQRRAWERNRGLQTLVTNLTYAHEHYELYLRYQCARHAGGG 127 C+AC PVR+ V F NRSQRR RN L T + E LY RY RH GG Sbjct: 67 HCNACVPVRVNVNAFVPNRSQRRCLARNATLVTRIVPAERNAEQLSLYRRYLHQRHPDGG 126 Query: 128 MDQDSRDQYAQFLLQSKVNTRLVEFRE-----ADGTLRMVSIIDVLNDGLSSVYTFFDPD 182 MD ++ QFL+ R +E RE G L V++ D+ + LS+VYTF++P+ Sbjct: 127 MDGHGAIEFDQFLIGPWGYGRFMEIREPATNGTPGQLLAVAVTDLTHQALSAVYTFYEPN 186 Query: 183 LPTASFGTYNILWQIEQARQLDMPYVYLGYWIKESQKMAYKTNFQPLEALYDG-EWSPLE 241 GT IL QI A++ PY+YLGYWIK+ KM YK FQ LE +YDG W P Sbjct: 187 AAARGLGTLAILHQIHWAQREQRPYLYLGYWIKDHFKMDYKRRFQKLE-IYDGYRWRPFS 245 >AGc2146 [O] COG2935 Putative arginyl-tRNA Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 269 Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 96/245 (39%), Positives = 129/245 (52%), Gaps = 19/245 (7%) Query: 13 QFYATAPYPCSYLDDQQARSQVATPSHLINA---DVYSELVKTGFRRSGIFTYRPYCDGC 69 QFY TAP C YL +Q R +HL+ ++ L + GFRRS YRP C+ C Sbjct: 27 QFYLTAPATCPYLPNQMERKVF---THLVGPRAPEMNDLLTQGGFRRSQNIAYRPACETC 83 Query: 70 HACTPVRIRVADFQRNRSQRRAWERNRGLQTLVTNLTYAHEHYELYLRYQCARHAGGGMD 129 AC VRI FQ +S RR N + V + E + L+ RY RH GGM Sbjct: 84 RACVSVRILTEQFQPTKSMRRVLAANSDVVATVHAAEPSTEQFALFRRYLDHRHQSGGMS 143 Query: 130 QDSRDQYAQFLLQSKVNTRLVEFREAD----------GTLRMVSIIDVLNDGLSSVYTFF 179 S YA + + VNTR++E+R + G L V++ DV++DGLS VY+FF Sbjct: 144 DMSALDYAIMVEDTHVNTRIIEYRVREPGSGIDSSKRGELLAVALSDVMSDGLSMVYSFF 203 Query: 180 DPDLPTASFGTYNILWQIEQARQLDMPYVYLGYWIKESQKMAYKTNFQPLEALYDGEW-- 237 +P+L S GT+ I+ I + R L +P+VYLGYW+ S+KM YKT + P E L W Sbjct: 204 NPELEKRSLGTFMIIDHITRTRALGLPHVYLGYWVDGSEKMGYKTRYHPQEHLTPRGWEI 263 Query: 238 -SPLE 241 SP E Sbjct: 264 YSPKE 268 >mll8364 [O] COG2935 Putative arginyl-tRNA Mlo Mesorhizobium loti Length = 254 Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 93/244 (38%), Positives = 130/244 (53%), Gaps = 18/244 (7%) Query: 8 PFSTLQFYATAPYPCSYLDDQQARSQVATPSHLINADVYSE----LVKTGFRRSGIFTYR 63 P + QF+ TAP PC YLD Q R +HL+ D SE L + GFRRS YR Sbjct: 5 PTQSPQFFLTAPSPCPYLDGQFERKVF---THLV-GDKASEMNDLLTQGGFRRSQNIAYR 60 Query: 64 PYCDGCHACTPVRIRVADFQRNRSQRRAWERNRGLQTLVTNLTYAHEHYELYLRYQCARH 123 P C+ C AC VRI +F +R+ +R + N L + N + E Y L+ Y ARH Sbjct: 61 PACETCRACVSVRILAQEFTASRNMKRVLQHNSDLVGAMHNAEPSTEQYSLFRSYLDARH 120 Query: 124 AGGGMDQDSRDQYAQFLLQSKVNTRLVEFR----------EADGTLRMVSIIDVLNDGLS 173 GGM + YA + + V+T+++E+R + G L V++ D + DGLS Sbjct: 121 RRGGMSDMTVLDYAMMVEDTHVDTKVIEYRRRGPDTFITGKGQGELIAVALTDKMADGLS 180 Query: 174 SVYTFFDPDLPTASFGTYNILWQIEQARQLDMPYVYLGYWIKESQKMAYKTNFQPLEALY 233 VY++F+P+ S GT+ IL I +AR + +P+VYLGYW+ S+KM YK F P E L Sbjct: 181 MVYSYFNPEFEERSLGTFMILDHIARARAMGLPHVYLGYWVNGSRKMNYKMRFMPQEHLG 240 Query: 234 DGEW 237 W Sbjct: 241 PKGW 244 >SMc01764 [O] COG2935 Putative arginyl-tRNA Sme Sinorhizobium meliloti Length = 259 Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 94/243 (38%), Positives = 127/243 (52%), Gaps = 16/243 (6%) Query: 13 QFYATAPYPCSYLDDQQARSQVATPSHLIN---ADVYSELVKTGFRRSGIFTYRPYCDGC 69 QFY TAP C YL +Q R +H++ ++ L + GFRRS YRP C+ C Sbjct: 10 QFYLTAPAACPYLPNQMERKVF---THMVGERAPELNDLLTQGGFRRSQNIAYRPACETC 66 Query: 70 HACTPVRIRVADFQRNRSQRRAWERNRGLQTLVTNLTYAHEHYELYLRYQCARHAGGGMD 129 AC VRI +F RS RR N + + + E Y L+ RY RH GGM Sbjct: 67 RACISVRILTNEFAPTRSMRRVLAANGEIVSAEYPAEPSSEQYNLFRRYLDCRHQKGGMS 126 Query: 130 QDSRDQYAQFLLQSKVNTRLVEFR----------EADGTLRMVSIIDVLNDGLSSVYTFF 179 S YA + + V+T+++E+R +A G L ++ D ++DGLS VY+FF Sbjct: 127 DMSVLDYAMMVEDTHVHTKIIEYRLRVEGDGINDKARGPLIATALTDRMSDGLSMVYSFF 186 Query: 180 DPDLPTASFGTYNILWQIEQARQLDMPYVYLGYWIKESQKMAYKTNFQPLEALYDGEWSP 239 DP L S GTY IL I +A++ +P+VYLGYW+K S+KM YKT F P E L W Sbjct: 187 DPALSERSLGTYMILDHIRRAKERGLPHVYLGYWVKGSRKMGYKTKFLPQEHLMARGWER 246 Query: 240 LEG 242 G Sbjct: 247 YSG 249 >VC1736 [O] COG2935 Putative arginyl-tRNA Vch Vibrio cholerae Length = 233 Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 117/227 (51%), Gaps = 14/227 (6%) Query: 17 TAPYPCSYLDDQQARSQVATPSHLINADVYSELVKTGFRRSGIFTYRPYCDGCHACTPVR 76 T +PCSYL D+ R VA + + Y L+ GFRRSG Y+P+CD C +C +R Sbjct: 13 TNNHPCSYLADRMERVAVAIDPQMQTPETYEVLMANGFRRSGDTIYKPHCDHCQSCQALR 72 Query: 77 IRVADFQRNRSQRRAWERNRGLQTLVTNLTYA------HEHYELYLRYQCARHAGGGMDQ 130 I DF ++SQ+R L+ L + + Y LY RY ARH G M Sbjct: 73 IPAPDFVPSKSQKRL------LKLLSQEFHWQLKPELDEDWYTLYARYIFARHRHGSMYP 126 Query: 131 DSRDQYAQFLLQSKVNTRLVEFREADGTLRMVSIIDVLNDGLSSVYTFFDPDLPTASFGT 190 ++ ++A+F +NT+ + + + L +++ D+L + S+ YTF+DPD+ + S GT Sbjct: 127 PNKMEFAKFARAKWLNTQYLHLYQGE-KLVAIAVTDLLPNSASAFYTFYDPDI-SISLGT 184 Query: 191 YNILWQIEQARQLDMPYVYLGYWIKESQKMAYKTNFQPLEALYDGEW 237 +L Q+ +Q ++YLGY I E M YK F P + L + W Sbjct: 185 LAVLCQLNYCQQTKKQWLYLGYQIDECPAMNYKVRFNPHQRLVNQRW 231 >Cj1035c [O] COG2935 Putative arginyl-tRNA Cje Campylobacter jejuni Length = 239 Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 15 YATAPYPCSYLDDQQARSQVATPSHLINADVYSELVKTGFRRSGIFTYRPYCDGCHACTP 74 + T C YL D+++R + + ++ +EL+K G+RR G + RP C C C Sbjct: 6 FCTLEDQCPYLKDKRSRIEYKYIEN-CPKEINNELIKRGWRRFGRYFSRPICKDCDECLS 64 Query: 75 VRIRVADFQRNRSQRRAWERNRGLQTLVTNLTYAHEH---YELYLRYQCARHAGGGMDQD 131 +RI V ++ +RS+RR +N + ++ ++EH Y+ Y R+ + D Sbjct: 65 LRILVNEYNFSRSERRVVNKNINTKVILRTPNLSNEHLFLYDKYHRFMEEKKNWKRYDL- 123 Query: 132 SRDQYAQFLLQSKVNTRLVEFREADGTLRMVSIIDVLNDGLSSVYTFFDPDLPTASFGTY 191 S QY + +N + L V +ID+L DG+SS+Y F+DPD S G + Sbjct: 124 SFKQYYNLYVDGFMNFGYELAFYIEDKLVCVDLIDILEDGISSIYCFYDPDFSYFSLGKF 183 Query: 192 NILWQIEQARQLDMPYVYLGYWIKESQKMAYKTNFQPLEAL 232 ++L +I+ A+++++ Y+YLGY++K+ Q ++YK ++ P E L Sbjct: 184 SLLNEIQIAKKMNLDYIYLGYFVKKCQSLSYKADYTPNEIL 224