BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0018.p         (213 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC3252 Non COG                                                        118   1e-26
BMEII0072_2 [S] COG4944 Uncharacterized protein conserved in bac...    97   4e-20
AGc4120 [S] COG4944 Uncharacterized protein conserved in bacteri...    73   5e-13

>CC3252 Non COG
          Length = 214

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/214 (38%), Positives = 108/214 (50%), Gaps = 1/214 (0%)

Query: 1   MKTDDLISMMASGVTPVDRRLPVKQMAQALLLGGLGALLLMLKIYGLRPDLGLMLGVPLF 60
           M+TDDLI  +A+         P +++A    LGG+ ALLL+L     RPDLG  +  P+F
Sbjct: 1   MRTDDLIDALAADAGRGTEPAPPRRLALVAGLGGVAALLLVLGWLQARPDLGQAILGPMF 60

Query: 61  WIKLAFPTTLAVGALLVLRRLMRPGLRVGVRWA-GIALPGLAVWAGGALVLLSAPLAQRL 119
           W+K  +   L +   L + RL RPG      W  G  + G    AG    + S  +   L
Sbjct: 61  WVKAIYTGLLGLAGYLAVERLSRPGGSGRRGWIIGAVVFGACAVAGIYQAITSPDVQAAL 120

Query: 120 PLLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLTGAIAGLLAGATATMVYCLH 179
            LL G SWRSC   I +L +P+     WA+RGMAPTR  L G   GL +G     +Y LH
Sbjct: 121 KLLHGYSWRSCSPRILVLGLPMLALGLWALRGMAPTRPGLAGFAMGLFSGGVVATLYGLH 180

Query: 180 CPEMGVPFWGVWYFLGILIPAAAGLLLGPRLLRW 213
           CPE    F  +WY LG+L     G   G  LLRW
Sbjct: 181 CPEHTFTFLALWYSLGVLALGLIGGWAGRWLLRW 214


>BMEII0072_2 [S] COG4944 Uncharacterized protein conserved in bacteria Bme
           Brucella melitensis
          Length = 210

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 102/211 (48%), Gaps = 1/211 (0%)

Query: 3   TDDLISMMASGVTPVDRRLPVKQMAQALLLGGLGALLLMLKIYGLRPDLGLMLGVPLFWI 62
           TDDLI+ +   + PV R    + +    LLG +  +++ML   G R DL   +  P FW 
Sbjct: 1   TDDLINRLTGELKPVSRHAMQRLLLGHALLGMVAGVVIMLAFLGARHDLAAAMATPAFWS 60

Query: 63  KLAFPTTLAVGALLVLRRLMRPGLRVGVRWAGIALPGLAVWAGGALVLLSAPLAQRLPLL 122
           KL +   L    L  L  L RP LR  + W  + L    + A        A    R  L+
Sbjct: 61  KLCYAALLLAVLLPALFALSRP-LRQNLPWPALLLIFSCLGAAAIYQWEEASPEVRPVLV 119

Query: 123 MGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLTGAIAGLLAGATATMVYCLHCPE 182
            G +   CP+ I L+S+P    +  A+R +AP R  L G  AGL++G    +VY  HCPE
Sbjct: 120 WGYTALVCPWLIGLISLPTLASLLLAIRKLAPARPTLAGFAAGLVSGGIGVLVYAFHCPE 179

Query: 183 MGVPFWGVWYFLGILIPAAAGLLLGPRLLRW 213
            G+PF  +WY LGI+     G L G   LRW
Sbjct: 180 SGLPFIALWYTLGIVGTGVLGALGGRFCLRW 210


>AGc4120 [S] COG4944 Uncharacterized protein conserved in bacteria Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 214

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 84/215 (39%), Positives = 111/215 (51%), Gaps = 6/215 (2%)

Query: 2   KTDDLISMMASGVTPVDRRLPVKQMAQALLLGGLGALLLMLKIYGLRPDLGLMLGVPLFW 61
           KT+D+I  +A  + PV      +++A+A L     +LLLM  I GLR D+   +  P FW
Sbjct: 3   KTEDIIEKLAGDLKPVPASALERRLARAALPALGLSLLLMFLILGLRRDMSDAMTEPGFW 62

Query: 62  IKLAFPTTLAVGALLVLRRLMRP-GLRVGV-RWAGIALPGLAVWAGGALVLLSAPL-AQR 118
           +K A+   LA+ A L + RL RP G R G+  W  +    +AV A   LV L   L    
Sbjct: 63  VKSAYNALLALTAFLAVMRLARPDGDRGGLFAWLAVIFVAMAVIA---LVQLGFALPGTY 119

Query: 119 LPLLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLTGAIAGLLAGATATMVYCL 178
             L++G S   CPF I   ++PLF+  F  +R  AP    L G  AGL AGA    VY  
Sbjct: 120 RTLILGSSALHCPFLIVAFALPLFLANFAVLRHSAPADPTLAGFAAGLAAGAAGAWVYSW 179

Query: 179 HCPEMGVPFWGVWYFLGILIPAAAGLLLGPRLLRW 213
            C E G+ F  +WY LGIL+    G   G RLLRW
Sbjct: 180 FCTENGMAFVLIWYSLGILLTGVIGAFAGSRLLRW 214