BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0037.p (196 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1597 [T] COG4566 Response regulator Rso Ralstonia solanacearum 158 8e-39 CC0758 Non COG 149 3e-36 AGl218 [T] COG4566 Response regulator Atu Agrobacterium tumefaci... 134 2e-31 SMa1227 [T] COG4566 Response regulator Sme Sinorhizobium meliloti 134 2e-31 mll0990 [T] COG4566 Response regulator Mlo Mesorhizobium loti 130 1e-30 mll6606 [T] COG4566 Response regulator Mlo Mesorhizobium loti 130 2e-30 SMb20869 [T] COG4566 Response regulator Sme Sinorhizobium meliloti 125 5e-29 mll0983 [T] COG4566 Response regulator Mlo Mesorhizobium loti 124 2e-28 AGl1128 [T] COG4566 Response regulator Atu Agrobacterium tumefac... 123 2e-28 BMEII0051 [T] COG4566 Response regulator Bme Brucella melitensis 122 7e-28 >RSc1597 [T] COG4566 Response regulator Rso Ralstonia solanacearum Length = 210 Score = 158 bits (399), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 86/197 (43%), Positives = 122/197 (61%), Gaps = 10/197 (5%) Query: 2 LHIVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAALAASPGIDAEGECLLLDVRMPGT 61 + +VDD+E +RDSL WL Y S L G+ CL+LDVRM G Sbjct: 15 VFVVDDDEAMRDSLTWLLEGNGYNVRTYRSAEEFLVDDKRGEGVG----CLILDVRMQGM 70 Query: 62 SGVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLEA 121 SG L + L + +R P++F+TGHGDVPMAV +K GA DF EKPF++++L + V Sbjct: 71 SGPELQDRLLAEN--NRMPIVFVTGHGDVPMAVSTMKKGAVDFIEKPFDESELRELVERM 128 Query: 122 LASSR----AGGAEDAVQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHRA 177 L+ +R A + A L+ L+ RE++VL+ I+AG++NK IAD+LGIS++TVE HRA Sbjct: 129 LSKARTEDSAAREQKAANDLLSRLTTREQQVLERIVAGRLNKQIADDLGISIKTVEAHRA 188 Query: 178 HIFDKMNVKTAVELARL 194 +I +K+NV T +L RL Sbjct: 189 NIMEKLNVNTVADLLRL 205 >CC0758 Non COG Length = 202 Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 85/201 (42%), Positives = 123/201 (61%), Gaps = 18/201 (8%) Query: 1 MLHIVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAALA-ASPGIDAEGECLLLDVRMP 59 ++H+VDD+E R+SLA+L S + AY S P L AL A PG+ ++ DVRMP Sbjct: 6 VVHVVDDDESARESLAFLLESADFEVVAYASAPAFLDALPQARPGV------VITDVRMP 59 Query: 60 GTSG---VALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMD 116 SG VA + LK K P++ +TGHGD+PMAV+ +++G DF EKPF++++++D Sbjct: 60 EMSGQDLVARLSALKVK-----MPIVMITGHGDIPMAVEAMRSGVIDFLEKPFSESRMLD 114 Query: 117 RVLEALASSRAGGAED---AVQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVE 173 + A A+ A D + R+ +LS RER+VLD ++AG NKVIA +LGIS RTVE Sbjct: 115 ALKRAFATVEAAPVSDDQAVILKRIESLSERERQVLDGVVAGHANKVIARDLGISPRTVE 174 Query: 174 VHRAHIFDKMNVKTAVELARL 194 ++RA + KM L R+ Sbjct: 175 IYRAKLMTKMQADNLAALVRM 195 >AGl218 [T] COG4566 Response regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 218 Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/197 (42%), Positives = 118/197 (59%), Gaps = 11/197 (5%) Query: 1 MLHIVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAALAASPGIDAEGECLLLDVRMPG 60 ++ IVDD+ +R++L L RS A A+DS AA ++ G CLLLDVR+PG Sbjct: 15 VVFIVDDDVSMREALTDLFRSMKFDAEAFDSA----AAFLEKANLNRHG-CLLLDVRLPG 69 Query: 61 TSGVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLE 120 SG+ L+ G +R P+IF+TG GD+PM+V +K GA DF KPF + ++D V Sbjct: 70 ISGLDFQVQLERVG--NRMPIIFMTGFGDIPMSVRAMKAGAVDFLTKPFKEQDILDAVAA 127 Query: 121 AL---ASSRAGGAE-DAVQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHR 176 A+ AS R A+ +AV S L+ REREV+ ++ G MNK IA ELGIS TV++HR Sbjct: 128 AMERDASRRRESAQNEAVTSLAGQLTPREREVMGAVVRGLMNKQIAYELGISEVTVKLHR 187 Query: 177 AHIFDKMNVKTAVELAR 193 ++ KM ++ +L R Sbjct: 188 GNVMRKMEARSVADLVR 204 >SMa1227 [T] COG4566 Response regulator Sme Sinorhizobium meliloti Length = 204 Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/198 (44%), Positives = 117/198 (59%), Gaps = 13/198 (6%) Query: 2 LHIVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAALAASPGIDAEGECLLLDVRMPGT 61 +HIVDDEE +R SLA++ A + S A LA +P D L+ D+RMP Sbjct: 6 VHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAE---AFLAFAP--DVRNGVLVTDLRMPDM 60 Query: 62 SGVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDN---QLMDRV 118 SGV L +L L P I +TGHGDVPMAV+ +K GA DF EKPF D + ++R Sbjct: 61 SGVELLRNLG--DLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERA 118 Query: 119 LEALASSRAGGAEDA--VQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHR 176 E L ++ A +DA +++RL LS RER+VL ++AG NK IA +L IS RTVEVHR Sbjct: 119 SEHLVAAEAD-VDDANDIRARLQTLSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHR 177 Query: 177 AHIFDKMNVKTAVELARL 194 A++ KM K+ L R+ Sbjct: 178 ANVMAKMKAKSLPHLVRM 195 >mll0990 [T] COG4566 Response regulator Mlo Mesorhizobium loti Length = 212 Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/193 (41%), Positives = 114/193 (59%), Gaps = 13/193 (6%) Query: 4 IVDDEEIIRDSLAWLARSRNIAATAYDSGPTLL-AALAASPGIDAEGECLLLDVRMPGTS 62 +VDD+ +RD+L L S I + ++ S +L A L P C +LDVRMPG S Sbjct: 16 LVDDDAEVRDALKELLNSVGIESISFSSTQEVLDAELPDRPA------CFVLDVRMPGQS 69 Query: 63 GVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLEAL 122 G+ L + L TKG+ + PV+FLTGHGD+ M+V +K GA DF KP D +D V A+ Sbjct: 70 GLDLQHLLLTKGI--QTPVVFLTGHGDIAMSVQAMKTGAVDFLTKPVRDQTFLDAVSVAV 127 Query: 123 ASSRAGGAEDAVQSRLAA----LSVREREVLDLILAGKMNKVIADELGISMRTVEVHRAH 178 A+ +A A + A L+ REREVL ++AG MNK IA +LGIS TV++HR++ Sbjct: 128 ATDKARRAASTAARKTMALYETLTPREREVLRFVVAGAMNKQIAFDLGISEITVKLHRSN 187 Query: 179 IFDKMNVKTAVEL 191 + KMN ++ L Sbjct: 188 MMKKMNARSLTHL 200 >mll6606 [T] COG4566 Response regulator Mlo Mesorhizobium loti Length = 204 Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/187 (41%), Positives = 109/187 (58%), Gaps = 11/187 (5%) Query: 12 RDSLAWLARSRNIAATAYDSGPTLLAALAASPGIDAEGECLLLDVRMPGTSGVALFNDLK 71 R SL +L + + A Y+S L+ EG C++ DVRMPG G+ L+ Sbjct: 17 RKSLGFLLATADFAVRLYESATAFLSTATGK----LEG-CIVTDVRMPGIDGIEFLRQLR 71 Query: 72 TKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLEALAS---SRAG 128 G H PVI +TGH DV +AV +K GA DF EKPF+D L++ + ALA+ + A Sbjct: 72 ASG--HTIPVIVMTGHADVALAVQAMKEGAADFIEKPFDDEMLIEAIRSALANRNQAHAA 129 Query: 129 GAEDA-VQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHRAHIFDKMNVKT 187 + A ++ RL+ LS RER+VLD +++G NK IA +LGIS RTVE+HRA++ KM + Sbjct: 130 HPQSADIRDRLSTLSERERQVLDGLVSGLPNKTIAYDLGISPRTVEIHRANVMSKMAAGS 189 Query: 188 AVELARL 194 L R+ Sbjct: 190 LSHLVRM 196 >SMb20869 [T] COG4566 Response regulator Sme Sinorhizobium meliloti Length = 233 Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 79/188 (42%), Positives = 114/188 (60%), Gaps = 11/188 (5%) Query: 12 RDSLAWLARSRNIAATAYDSGPTLLAALAASPGIDAEGECLLLDVRMPGTSGVALFNDLK 71 R+ L+ L S ++ S LL A+ +D G CL+LDV MPG SG+ L + L Sbjct: 36 REGLSELILSAGFQPVSFASTQELLNAVDI---LDGPG-CLILDVHMPGESGLDLQHHLA 91 Query: 72 TKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLEALASSRAGGAE 131 +G+ +P+IFLTG GD+PM V +K+GA DF KP +D L+D V+ A+A + AE Sbjct: 92 ERGI--GKPIIFLTGRGDIPMTVQAMKDGAVDFLTKPVSDRTLLDAVIAAIALDQTQRAE 149 Query: 132 DAVQS----RLAALSVREREVL-DLILAGKMNKVIADELGISMRTVEVHRAHIFDKMNVK 186 V RL L+ REREVL +++ G++NK IA +LGIS TV++HRA++ KM V+ Sbjct: 150 AIVVKRNVERLKTLTRREREVLREVVTRGRLNKQIAFDLGISEVTVKLHRANVMRKMEVR 209 Query: 187 TAVELARL 194 + EL R+ Sbjct: 210 SIGELIRV 217 >mll0983 [T] COG4566 Response regulator Mlo Mesorhizobium loti Length = 246 Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/193 (40%), Positives = 112/193 (58%), Gaps = 13/193 (6%) Query: 4 IVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAA-LAASPGIDAEGECLLLDVRMPGTS 62 IVDD+ +R +++ L S + + S LL A + +PG CL+LDVRMPG S Sbjct: 41 IVDDDASVRQAVSELILSAGLQPVCFASTGELLDADVLDNPG------CLILDVRMPGAS 94 Query: 63 GVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLEAL 122 G+ L + L +G + +PVIFLTGHGD+PM+V +K GA DF KP D L+D V+ + Sbjct: 95 GLDLQHRLAQRG--NPKPVIFLTGHGDIPMSVQAMKAGAVDFLTKPVRDQTLLDAVIAGI 152 Query: 123 ASSRAGGAEDAVQSR----LAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHRAH 178 A E A+ R AAL+ RER+VL + G+++K IA +LGIS TV++HR + Sbjct: 153 AIDAVQRKEAAIVKRNTELFAALTPRERQVLREVARGRVSKQIAFDLGISEITVKLHRGN 212 Query: 179 IFDKMNVKTAVEL 191 KM + +L Sbjct: 213 AMRKMKAASIGQL 225 >AGl1128 [T] COG4566 Response regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 182 Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 103/178 (57%), Gaps = 13/178 (7%) Query: 21 SRNIAATAYDSGPTLL-AALAASPGIDAEGECLLLDVRMPGTSGVALFNDLKTKGLLHRR 79 S +A + S LL L PG CL+LDVRMPG SG+ L L T+G+ + Sbjct: 3 SVGLAVACFSSSRELLNVGLPDRPG------CLVLDVRMPGASGLDLQQQLSTRGVT--K 54 Query: 80 PVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLEALAS--SRAGGAEDAVQ-- 135 P++FLTG+GD+PM V +K GA DF KP D L+D V+ + + AE+ Q Sbjct: 55 PIVFLTGYGDIPMTVQAMKAGAVDFLTKPVRDQTLLDAVIAGIQRDVEQRAQAENIHQHV 114 Query: 136 SRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHRAHIFDKMNVKTAVELAR 193 +R L+ RER+VL ++ G++NK IA ELGIS TV++HR+++ KM + EL R Sbjct: 115 TRFDTLTPRERQVLGEVVRGRLNKQIAFELGISEITVKLHRSNVMRKMRTTSVGELIR 172 >BMEII0051 [T] COG4566 Response regulator Bme Brucella melitensis Length = 212 Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/196 (40%), Positives = 107/196 (54%), Gaps = 13/196 (6%) Query: 4 IVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLA-ALAASPGIDAEGECLLLDVRMPGTS 62 IVDD+ +R L L S + A + S L A P CL+LDVRMPG S Sbjct: 13 IVDDDHSVRLGLVDLFASIGLKALCFASVNEFLKHAREEVPA------CLILDVRMPGES 66 Query: 63 GVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLEAL 122 G + KGL R PVIF+TGHGD+ M V +K+GA DF KPF + L+D V +A+ Sbjct: 67 GTEFHA--RMKGLDIRLPVIFITGHGDIAMGVKAIKDGAIDFLAKPFRNQDLLDAVQQAI 124 Query: 123 ASSRAGGAEDAVQSRLAA----LSVREREVLDLILAGKMNKVIADELGISMRTVEVHRAH 178 + R E+ Q R+ A L+ ER V L++ G MNK IA EL ++ TV+V R+H Sbjct: 125 RTDRKRLREEHNQHRIIARYQTLNQGERAVFKLVVQGLMNKQIAAELDVAEVTVKVRRSH 184 Query: 179 IFDKMNVKTAVELARL 194 + KM K+ +L R+ Sbjct: 185 LMHKMRAKSLADLVRM 200