BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0028.p (177 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2544 [L] COG4974 Site-specific recombinase XerD Rso Ralstonia... 273 1e-73 PA3738 [L] COG4974 Site-specific recombinase XerD Pae Pseudomona... 235 4e-62 YPO0892 [L] COG4974 Site-specific recombinase XerD Ype Yersinia ... 224 7e-59 PM0093 [L] COG4974 Site-specific recombinase XerD Pmu Pasteurell... 224 1e-58 VC2419 [L] COG4974 Site-specific recombinase XerD Vch Vibrio cho... 223 1e-58 xerD [L] COG4974 Site-specific recombinase XerD Eco Escherichia ... 223 2e-58 STM3044 [L] COG4974 Site-specific recombinase XerD Sty Salmonell... 223 2e-58 ZxerD [L] COG4974 Site-specific recombinase XerD EcZ Escherichia... 220 1e-57 ECs3766 [L] COG4974 Site-specific recombinase XerD Ecs Escherich... 220 1e-57 HI0309 [L] COG4974 Site-specific recombinase XerD Hin Haemophilu... 218 5e-57 >RSc2544 [L] COG4974 Site-specific recombinase XerD Rso Ralstonia solanacearum Length = 308 Score = 273 bits (698), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 136/178 (76%), Positives = 150/178 (84%), Gaps = 1/178 (0%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTG-KGSKTRLV 59 L+AAPDV PLGLRDRAMIELMYASGLRVSE+V LK++EVG+NEGV+RV G KG K RLV Sbjct: 131 LIAAPDVDAPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKGGKDRLV 190 Query: 60 PFGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTAR 119 PFG EAG WL RYL + R +L + DALFVTARG MTRQ FW LIK+YA +A + A Sbjct: 191 PFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGDGMTRQAFWYLIKRYAQRADIHAP 250 Query: 120 LSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 LSPHTLRHAFATHLLNHGADLRVVQ+LLGHADISTTQIYTHVARERL+ LHA HHPRG Sbjct: 251 LSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPRG 308 >PA3738 [L] COG4974 Site-specific recombinase XerD Pae Pseudomonas aeruginosa Length = 298 Score = 235 bits (600), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 117/177 (66%), Positives = 137/177 (77%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 60 LLAAP+V PLGLRDR M+E++YA GLRVSELV L +V + +GV++V GKGSK RLVP Sbjct: 122 LLAAPEVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKERLVP 181 Query: 61 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTARL 120 GEEA WL RYL EAR +L G+ D LF + RG MTRQ FW IK +A A + + Sbjct: 182 LGEEAIGWLERYLREARGDLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHAQVAAIGTSI 241 Query: 121 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 SPHTLRHAFATHLLNHGADLRVVQ+LLGH+D+STTQIYTH+AR RL+ LHA HHPRG Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQDLHARHHPRG 298 >YPO0892 [L] COG4974 Site-specific recombinase XerD Ype Yersinia pestis Length = 299 Score = 224 bits (571), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 110/178 (61%), Positives = 134/178 (75%), Gaps = 1/178 (0%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 60 LL +P+V PL LRD+AM+E++YA+GLRVSELV L +V + +GV+RV GKG+K RLVP Sbjct: 122 LLNSPNVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVP 181 Query: 61 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGV-TAR 119 GEEA W+ Y+ R ++ G D LF + R MTRQ FW IK YA+ AG+ + R Sbjct: 182 LGEEAVYWIENYMEHGRPWLVNGASLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSER 241 Query: 120 LSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 LSPH LRHAFATHLLNHGADLRVVQ+LLGH+D+STTQIYTHVA ERL+QLH HHPR Sbjct: 242 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 299 >PM0093 [L] COG4974 Site-specific recombinase XerD Pmu Pasteurella multocida Length = 297 Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 106/178 (59%), Positives = 134/178 (75%), Gaps = 1/178 (0%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 60 LL +PDV PL LRD+AM+EL+YA+GLRV+ELV L + +N+G++RV GKG+K R+VP Sbjct: 120 LLNSPDVDIPLELRDKAMMELLYATGLRVTELVSLTIENININQGIVRVVGKGNKERIVP 179 Query: 61 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTAR- 119 GEEA W+ +++ R +L GQ D +F + R MTRQ FW IK YAL + + Sbjct: 180 IGEEATYWIRQFMLYGRPFLLHGQSSDVVFPSKRALQMTRQTFWHRIKHYALLSDIDINS 239 Query: 120 LSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 LSPH LRHAFATHL+NHGADLRVVQ+LLGH+D+STTQIYTHVA+ERLK LH +HPRG Sbjct: 240 LSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKHLHERYHPRG 297 >VC2419 [L] COG4974 Site-specific recombinase XerD Vch Vibrio cholerae Length = 302 Score = 223 bits (569), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 109/178 (61%), Positives = 135/178 (75%), Gaps = 1/178 (0%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 60 LL+APD +PL LRD+AM+EL+YA+GLRV+ELV L + + +GV+RV GKG K RLVP Sbjct: 125 LLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVP 184 Query: 61 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGV-TAR 119 GE A W+ +L + R+ +L Q D +F ++RG MTRQ FW IK YA+ AG+ + Sbjct: 185 MGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEK 244 Query: 120 LSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 LSPH LRHAFATHLLN+GADLRVVQ+LLGH+D+STTQIYTHVA ERLKQLH HHPR Sbjct: 245 LSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302 >xerD [L] COG4974 Site-specific recombinase XerD Eco Escherichia coli K12 Length = 298 Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 111/178 (62%), Positives = 133/178 (74%), Gaps = 1/178 (0%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 60 LL AP + PL LRD+AM+E++YA+GLRVSELV L ++ + +GV+RV GKG+K RLVP Sbjct: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 Query: 61 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGV-TAR 119 GEEA WL YL R +L G D LF + R MTRQ FW IK YA+ AG+ + + Sbjct: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 Query: 120 LSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 LSPH LRHAFATHLLNHGADLRVVQ+LLGH+D+STTQIYTHVA ERL+QLH HHPR Sbjct: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >STM3044 [L] COG4974 Site-specific recombinase XerD Sty Salmonella typhimurium LT2 Length = 298 Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 111/178 (62%), Positives = 133/178 (74%), Gaps = 1/178 (0%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 60 LL AP + PL LRD+AM+E++YA+GLRVSELV L ++ + +GV+RV GKG+K RLVP Sbjct: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 Query: 61 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGV-TAR 119 GEEA WL YL R +L G D LF + R MTRQ FW IK YA+ AG+ + + Sbjct: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 Query: 120 LSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 LSPH LRHAFATHLLNHGADLRVVQ+LLGH+D+STTQIYTHVA ERL+QLH HHPR Sbjct: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >ZxerD [L] COG4974 Site-specific recombinase XerD EcZ Escherichia coli O157:H7 EDL933 Length = 298 Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 110/178 (61%), Positives = 132/178 (74%), Gaps = 1/178 (0%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 60 LL AP + PL LRD+AM+E++YA+GLRVSELV L ++ + +GV+RV GKG+K RLVP Sbjct: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 Query: 61 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGV-TAR 119 GEEA WL YL R +L G D LF + R MTRQ W IK YA+ AG+ + + Sbjct: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTLWHRIKHYAVLAGIDSEK 240 Query: 120 LSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 LSPH LRHAFATHLLNHGADLRVVQ+LLGH+D+STTQIYTHVA ERL+QLH HHPR Sbjct: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >ECs3766 [L] COG4974 Site-specific recombinase XerD Ecs Escherichia coli O157:H7 Length = 298 Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 110/178 (61%), Positives = 132/178 (74%), Gaps = 1/178 (0%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 60 LL AP + PL LRD+AM+E++YA+GLRVSELV L ++ + +GV+RV GKG+K RLVP Sbjct: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 Query: 61 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGV-TAR 119 GEEA WL YL R +L G D LF + R MTRQ W IK YA+ AG+ + + Sbjct: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTLWHRIKHYAVLAGIDSEK 240 Query: 120 LSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 LSPH LRHAFATHLLNHGADLRVVQ+LLGH+D+STTQIYTHVA ERL+QLH HHPR Sbjct: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >HI0309 [L] COG4974 Site-specific recombinase XerD Hin Haemophilus influenzae Length = 297 Score = 218 bits (556), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 105/178 (58%), Positives = 132/178 (74%), Gaps = 1/178 (0%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 60 LL P+V PL LRD+AM+EL+YA+GLRV+ELV L + + +GV+RV GKG+K R+VP Sbjct: 120 LLNTPNVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVP 179 Query: 61 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTAR- 119 GEEA W+ +++ R +L GQ D +F + R MTRQ FW +K YA+ A + A Sbjct: 180 MGEEAAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADA 239 Query: 120 LSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 LSPH LRHAFATHL+NHGADLRVVQ+LLGH D+STTQIYTHVA+ERLK+LH HPRG Sbjct: 240 LSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPRG 297