BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0020.p (89 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1182 [J] COG0254 Ribosomal protein L31 Rso Ralstonia solanace... 128 4e-30 XF1534 [J] COG0254 Ribosomal protein L31 Xfa Xylella fastidiosa ... 114 6e-26 VC0878 [J] COG0254 Ribosomal protein L31 Vch Vibrio cholerae 100 6e-22 BH3780 [J] COG0254 Ribosomal protein L31 Bha Bacillus halodurans 100 1e-21 FN0482 [J] COG0254 Ribosomal protein L31 Fnu Fusobacterium nucle... 98 4e-21 SPy0717 [J] COG0254 Ribosomal protein L31 Spy Streptococcus pyog... 97 1e-20 Cgl0848 [J] COG0254 Ribosomal protein L31 Cgl Corynebacterium gl... 96 1e-20 lin2692 [J] COG0254 Ribosomal protein L31 Lin Listeria innocua 94 8e-20 SP1299 [J] COG0254 Ribosomal protein L31 Spn Streptococcus pneum... 94 1e-19 SA1922 [J] COG0254 Ribosomal protein L31 Sau Staphylococcus aure... 93 1e-19 >RSc1182 [J] COG0254 Ribosomal protein L31 Rso Ralstonia solanacearum Length = 87 Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 61/86 (70%), Positives = 71/86 (82%), Gaps = 1/86 (1%) Query: 1 MKEGIHPDYREVLFHDMSNDFKFITRSTIGTRETAEF-EGKQYPLVKIEVSSESHPFYTG 59 MKE HP+YREV+F DMS+DF F+TRSTI T+E+ + +GK+YPL KIEVSSESHPFYTG Sbjct: 1 MKENTHPNYREVVFQDMSSDFSFVTRSTIQTKESIVWKDGKEYPLAKIEVSSESHPFYTG 60 Query: 60 KHKIVDTAGRVEKFRQKFGSVGSKTA 85 KI+DTAGRVEKFRQKFGS K A Sbjct: 61 TQKIMDTAGRVEKFRQKFGSKAGKAA 86 >XF1534 [J] COG0254 Ribosomal protein L31 Xfa Xylella fastidiosa 9a5c Length = 80 Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 49/79 (62%), Positives = 70/79 (88%), Gaps = 1/79 (1%) Query: 1 MKEGIHPDYREVLFHDMSNDFKFITRSTIGTRETAEFE-GKQYPLVKIEVSSESHPFYTG 59 MK IHP YREV+FHD++++FKF+TRST+ T+ET +E G++YPLVK+E+SS SHPFYTG Sbjct: 1 MKPEIHPIYREVVFHDVTSNFKFLTRSTMSTKETTLWEDGREYPLVKVEISSASHPFYTG 60 Query: 60 KHKIVDTAGRVEKFRQKFG 78 KHK+VDT+GR++KF++++ Sbjct: 61 KHKLVDTSGRIDKFKKRYA 79 >VC0878 [J] COG0254 Ribosomal protein L31 Vch Vibrio cholerae Length = 85 Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 46/78 (58%), Positives = 57/78 (73%) Query: 1 MKEGIHPDYREVLFHDMSNDFKFITRSTIGTRETAEFEGKQYPLVKIEVSSESHPFYTGK 60 MK GIHPDYR+V+FHD + D F+ ST+ T T E+EGK YP + IEVSSESHPFYTGK Sbjct: 1 MKAGIHPDYRKVVFHDTTVDHYFVVGSTLQTDRTIEWEGKTYPYITIEVSSESHPFYTGK 60 Query: 61 HKIVDTAGRVEKFRQKFG 78 ++V GRV F ++FG Sbjct: 61 QRVVQKEGRVANFTRRFG 78 >BH3780 [J] COG0254 Ribosomal protein L31 Bha Bacillus halodurans Length = 81 Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 44/78 (56%), Positives = 61/78 (78%), Gaps = 1/78 (1%) Query: 1 MKEGIHPDYREVLFHDMSNDFKFITRSTIGTRETAEFE-GKQYPLVKIEVSSESHPFYTG 59 MK GIHPDY++V+F D S FKF++ ST + ET E+E G YPL+K+E+SS+SHPFYTG Sbjct: 1 MKPGIHPDYKKVVFMDTSTGFKFLSGSTKTSNETIEWEDGNTYPLIKVEISSDSHPFYTG 60 Query: 60 KHKIVDTAGRVEKFRQKF 77 K K+ D GRV++F++K+ Sbjct: 61 KQKLADAGGRVDRFKKKY 78 >FN0482 [J] COG0254 Ribosomal protein L31 Fnu Fusobacterium nucleatum Length = 81 Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 47/83 (56%), Positives = 67/83 (80%), Gaps = 2/83 (2%) Query: 1 MKEGIHPDYREVLFHDMSNDFKFITRSTIGTRETAEFEGKQYPLVKIEVSSESHPFYTGK 60 MK+GIHP++ V+F DM+ + +F+TRST +ET FEGK+YP++K+ VSS+SHPFYTG+ Sbjct: 1 MKKGIHPEFDLVVFEDMAGN-QFLTRSTKIPKETTTFEGKEYPVIKVAVSSKSHPFYTGE 59 Query: 61 HKIVDTAGRVEKFRQKFGSVGSK 83 + VDTAGRV+KF +KF ++G K Sbjct: 60 QRFVDTAGRVDKFNKKF-NLGKK 81 >SPy0717 [J] COG0254 Ribosomal protein L31 Spy Streptococcus pyogenes M1 GAS Length = 86 Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 39/78 (50%), Positives = 60/78 (76%) Query: 1 MKEGIHPDYREVLFHDMSNDFKFITRSTIGTRETAEFEGKQYPLVKIEVSSESHPFYTGK 60 M++ IHPDYR V+F D + ++F++ ST ++ET EFEG+ YPL+++E+SS+SHPFYTG+ Sbjct: 1 MRKDIHPDYRPVVFLDTTTGYQFLSGSTKASKETVEFEGETYPLIRVEISSDSHPFYTGR 60 Query: 61 HKIVDTAGRVEKFRQKFG 78 K GRV++F +K+G Sbjct: 61 QKFTQADGRVDRFNKKYG 78 >Cgl0848 [J] COG0254 Ribosomal protein L31 Cgl Corynebacterium glutamicum Length = 88 Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 41/84 (48%), Positives = 61/84 (72%), Gaps = 1/84 (1%) Query: 1 MKEGIHPDYREVLFHDMSNDFKFITRSTIGTRETAEFE-GKQYPLVKIEVSSESHPFYTG 59 MK+ IHPDY V+F D F+F+T+ST + T +E G +YPL+ ++V+SESHPF+TG Sbjct: 1 MKKDIHPDYHAVVFQDAGTGFQFLTKSTASSDRTVSWEDGNEYPLIVVDVTSESHPFWTG 60 Query: 60 KHKIVDTAGRVEKFRQKFGSVGSK 83 +++DTAGRVEKF ++FG + + Sbjct: 61 AQRVMDTAGRVEKFERRFGGMARR 84 >lin2692 [J] COG0254 Ribosomal protein L31 Lin Listeria innocua Length = 81 Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 43/79 (54%), Positives = 60/79 (75%), Gaps = 1/79 (1%) Query: 1 MKEGIHPDYREVLFHDMSNDFKFITRSTIGTRETAEFE-GKQYPLVKIEVSSESHPFYTG 59 MK GIHP+YR V+F D S DFKF++ ST + ET ++E G +YPL+++E+SS+SHPFYTG Sbjct: 1 MKTGIHPEYRPVVFVDTSTDFKFLSGSTKSSSETIKWEDGNEYPLLRVEISSDSHPFYTG 60 Query: 60 KHKIVDTAGRVEKFRQKFG 78 K K GRV++F +K+G Sbjct: 61 KQKHATADGRVDRFNKKYG 79 >SP1299 [J] COG0254 Ribosomal protein L31 Spn Streptococcus pneumoniae TIGR4 Length = 80 Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 39/78 (50%), Positives = 59/78 (75%) Query: 1 MKEGIHPDYREVLFHDMSNDFKFITRSTIGTRETAEFEGKQYPLVKIEVSSESHPFYTGK 60 MK+ IHP+YR V+F D + ++F++ ST + ET EFEG+ YPL+++E+SS+SHPFYTG+ Sbjct: 1 MKKDIHPEYRPVVFMDTTTGYQFLSGSTKRSNETVEFEGETYPLIRVEISSDSHPFYTGR 60 Query: 61 HKIVDTAGRVEKFRQKFG 78 K GRV++F +K+G Sbjct: 61 QKFTQADGRVDRFNKKYG 78 >SA1922 [J] COG0254 Ribosomal protein L31 Sau Staphylococcus aureus N315 Length = 84 Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 40/79 (50%), Positives = 61/79 (77%), Gaps = 1/79 (1%) Query: 1 MKEGIHPDYREVLFHDMSNDFKFITRSTIGTRETAEFE-GKQYPLVKIEVSSESHPFYTG 59 MK+GIHP+Y +V+F D + +FKF++ ST + E E+E GK+YP++++++SS+SHPFYTG Sbjct: 1 MKQGIHPEYHQVIFLDTTTNFKFLSGSTKTSSEMMEWEDGKEYPVIRLDISSDSHPFYTG 60 Query: 60 KHKIVDTAGRVEKFRQKFG 78 + K GRVE+F +KFG Sbjct: 61 RQKFAAADGRVERFNKKFG 79