BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0140.p (207 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2967 [M] COG3047 Outer membrane protein W Rso Ralstonia solan... 206 3e-53 BMEI0454 [M] COG3047 Outer membrane protein W Bme Brucella melit... 151 9e-37 mll6127 [M] COG3047 Outer membrane protein W Mlo Mesorhizobium loti 145 4e-35 AGl3239 [M] COG3047 Outer membrane protein W Atu Agrobacterium t... 137 1e-32 VCA0867 [M] COG3047 Outer membrane protein W Vch Vibrio cholerae 114 1e-25 CC1409 [M] COG3047 Outer membrane protein W Ccr Caulobacter vibr... 100 2e-21 ZyciD [M] COG3047 Outer membrane protein W EcZ Escherichia coli ... 98 1e-20 ECs1756 [M] COG3047 Outer membrane protein W Ecs Escherichia col... 98 1e-20 ompW [M] COG3047 Outer membrane protein W Eco Escherichia coli K12 97 3e-20 YPO2201 [M] COG3047 Outer membrane protein W Ype Yersinia pestis 96 4e-20 >RSc2967 [M] COG3047 Outer membrane protein W Rso Ralstonia solanacearum Length = 224 Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 106/188 (56%), Positives = 133/188 (70%), Gaps = 12/188 (6%) Query: 31 WLVRVRAVHLSPENKSDPINGQGA-SDLITINSKTIPEVDISYFFTKNIAAELVLTYPQE 89 W+VR+RAV+L+ NKSD I D I IN+K PE+DISYFFT N+AAEL+LTYPQ+ Sbjct: 38 WMVRLRAVNLTAANKSDAIPALAVPDDAIHINNKAFPELDISYFFTPNLAAELILTYPQQ 97 Query: 90 QDVRLNGS------KIGTFKHLPPSLLVQYHFMPDSAFSPYVGAGINYTRISSVNIS--- 140 QDV + S KIG+F+HLPP L +QYHF P+S F PY+GAG+NYTRISSV++ Sbjct: 98 QDVTVMQSALGGPTKIGSFRHLPPILTLQYHFRPESRFKPYLGAGLNYTRISSVDLQVPG 157 Query: 141 -GGLQLDNSSFGGALQIGADYKINKNWLINFDIKKVQISSDVKTAAGAKISSVKIDPWLI 199 G L L +SFG ALQ G DY++ +N DIKK IS+DVK G +S V+IDPWL+ Sbjct: 158 VGPLDLSRNSFGPALQAGFDYRLTDRVYLNVDIKKTWISADVKL-GGQTVSKVRIDPWLV 216 Query: 200 GVGVGYRF 207 GVG+GYRF Sbjct: 217 GVGLGYRF 224 >BMEI0454 [M] COG3047 Outer membrane protein W Bme Brucella melitensis Length = 219 Score = 151 bits (382), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 93/191 (48%), Positives = 123/191 (64%), Gaps = 12/191 (6%) Query: 26 EAQSPWLVRVRAVHLSPENKSDPINGQGASDLITINSKTIPEVDISYFFTKNIAAELVL- 84 EA SPW +RVRA+ + EN S ++G SDL S T PE+DI+Y+FTKNIAAEL+L Sbjct: 32 EALSPWQIRVRALGVIAEN-SGYVDGVAGSDLNYSKSIT-PELDITYYFTKNIAAELILG 89 Query: 85 -TYPQEQDV-RLNG-SKIGTFKHLPPSLLVQYHFMPDSAFSPYVGAGINYTRISSVNISG 141 TY L+G KIG LPP+L +QYHF AF PYVGAG+NYT + + Sbjct: 90 TTYANINGAGSLDGFGKIGKVWILPPTLTLQYHFTNFGAFKPYVGAGVNYTFFYNQDAGS 149 Query: 142 --GLQLDNSSFGGALQIGADYKINKNWLINFDIKKVQISS--DVKTAAGAKISS-VKIDP 196 L++ N +FGGALQIG DY +N++W +NFD+KK+ + D A GA++S K++P Sbjct: 150 VDYLKVKN-TFGGALQIGFDYMLNEHWGVNFDVKKLFLEPKFDATLAGGAEVSGKAKLNP 208 Query: 197 WLIGVGVGYRF 207 WLIG G+ YRF Sbjct: 209 WLIGTGITYRF 219 >mll6127 [M] COG3047 Outer membrane protein W Mlo Mesorhizobium loti Length = 230 Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 87/190 (45%), Positives = 121/190 (63%), Gaps = 11/190 (5%) Query: 26 EAQSPWLVRVRAVHLSPENKSDPINGQGASDLITINSKTIPEVDISYFFTKNIAAELVL- 84 EA SPW +R+RA+ + E+ S +N S L N+ T PE+DISYFFT NIAAEL+L Sbjct: 44 EAPSPWQIRLRALGVITED-SGYVNAVPGSGLSYSNTVT-PELDISYFFTDNIAAELILG 101 Query: 85 -TYPQ-EQDVRLNG-SKIGTFKHLPPSLLVQYHFMPDSAFSPYVGAGINYTRI--SSVNI 139 TY + + G K+G LPP+L +QYHF AF PY+GAG+NYT V Sbjct: 102 TTYANIDGQGAIGGLGKVGKVWLLPPTLTLQYHFTDFGAFEPYIGAGVNYTIFYHQQVGS 161 Query: 140 SGGLQLDNSSFGGALQIGADYKINKNWLINFDIKKVQISSDVK-TAAGAKISS-VKIDPW 197 + L++ N +FG ALQ+G DY ++++W +NFD+KK+ + D T AGAK++ K+DPW Sbjct: 162 ADDLKVKN-TFGAALQVGFDYMVDQHWGVNFDVKKLFLKPDFDVTVAGAKLTGKAKLDPW 220 Query: 198 LIGVGVGYRF 207 +IG G+ YRF Sbjct: 221 VIGAGLTYRF 230 >AGl3239 [M] COG3047 Outer membrane protein W Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 228 Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/191 (41%), Positives = 116/191 (60%), Gaps = 9/191 (4%) Query: 24 AQEAQSPWLVRVRAVHLSPENKSDPINGQGASDLITINSKTIPEVDISYFFTKNIAAELV 83 A A SPW++RVR + + N S ++G + L + + IPE+DISYFFT N AAEL+ Sbjct: 40 AIAAASPWMLRVRGLGVI-TNDSGSVDGLPGAGL-SYSDTVIPELDISYFFTDNFAAELI 97 Query: 84 L--TYPQ-EQDVRLNGSKIGTFKHLPPSLLVQYHFMPDSAFSPYVGAGINYTRISSVNIS 140 L TY + + L G+ +G LPP+L +QYHF AF PY+GAG+NY+ + + Sbjct: 98 LGTTYAKINGEGVLAGTPVGKTWLLPPTLTLQYHFTDFGAFKPYIGAGVNYSLFYNQSEK 157 Query: 141 GGL-QLD-NSSFGGALQIGADYKINKNWLINFDIKKVQISSD-VKTAAGAKISS-VKIDP 196 G LD + G A+Q+G DY ++++W +NFD+KK+ + +D G IS K+DP Sbjct: 158 PGFSNLDVKNKLGAAVQVGFDYMLDEHWGVNFDVKKIFLKTDWTAELGGTPISGKAKLDP 217 Query: 197 WLIGVGVGYRF 207 WLIG G+ YRF Sbjct: 218 WLIGAGITYRF 228 >VCA0867 [M] COG3047 Outer membrane protein W Vch Vibrio cholerae Length = 217 Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 26/225 (11%) Query: 1 VKKIVTIAAAAAAFASSFAAPVFAQEAQSPWLVRVRAVHLSPENKSDPI-NGQGASDLIT 59 +K+ + A AA +S APVFA + + ++VR + P + SD + N Q + Sbjct: 1 MKQTICGLAVLAALSS---APVFAHQ-EGDFIVRAGIASVVPNDSSDKVLNTQSE---LA 53 Query: 60 INSKTIPEVDISYFFTKNIAAELVLTYPQEQDVRLNGSKIGTF------KHLPPSLLVQY 113 +NS T + + Y FT NI+ E++ P + +G ++G+ KHLPP+ +VQY Sbjct: 54 VNSNTQLGLTLGYMFTDNISFEVLAATPFSHKISTSGGELGSLGDIGETKHLPPTFMVQY 113 Query: 114 HF-MPDSAFSPYVGAGINYTRI--SSVNISG------GLQLDNSSFGGALQIGADYKINK 164 +F +S F PYVGAG+NYT S N +G L+LD+S +G A +G DY +N Sbjct: 114 YFGEANSTFRPYVGAGLNYTTFFDESFNGTGTNAGLSDLKLDDS-WGLAANVGFDYMLND 172 Query: 165 NWLINFDI--KKVQISSDVKTAAGAKISSVKIDPWLIGVGVGYRF 207 +W +N + ++ ++ K A AK + V+I+PW+ + GY+F Sbjct: 173 SWFLNASVWYANIETTATYKAGADAKSTDVEINPWVFMIAGGYKF 217 >CC1409 [M] COG3047 Outer membrane protein W Ccr Caulobacter vibrioides Length = 214 Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 8/192 (4%) Query: 23 FAQEAQSPWLVRVRAVHLSPENKSDPINGQGASDLIT--INSKTIPEVDISYFFTKNIAA 80 F A+ +V R ++P + + GA+ + + + P + +YF T +A Sbjct: 24 FTPNAKGDLIVHARLTQVAPAKDAAILTAAGANSGLKAHVGNDIKPTLGFTYFLTDKVAV 83 Query: 81 ELVLTYPQEQDVRLNGSKIGTFKH----LPPSLLVQYHFMPDSAFSPYVGAGINYTRISS 136 E +L E ++R G H LPP + +QYH +P S SPYVGAG+NY S Sbjct: 84 EAILG-TTEHNIRAQGPGTDVLVHKTWVLPPVVTLQYHPLPASQVSPYVGAGLNYMLFYS 142 Query: 137 VNISGGLQLD-NSSFGGALQIGADYKINKNWLINFDIKKVQISSDVKTAAGAKISSVKID 195 G + + G ALQ G + K+ +WL+N D+KKV S+D K GA + V +D Sbjct: 143 GKNKNGFTVKVDDGVGYALQAGVNIKMKNSWLVNADVKKVYFSTDAKINGGALKAKVDLD 202 Query: 196 PWLIGVGVGYRF 207 P + +G+ +F Sbjct: 203 PVVASIGLSRKF 214 >ZyciD [M] COG3047 Outer membrane protein W EcZ Escherichia coli O157:H7 EDL933 Length = 212 Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 20/215 (9%) Query: 7 IAAAAAAFASSFAAPVFAQEAQSPWLVRVRAVHLSP-ENKSDPINGQGASDLITINSKTI 65 + AA A + + FA EA + +R + + P E + G ++ + T Sbjct: 4 LTVAALAVTTLLSGSAFAHEA-GEFFMRAGSATVRPTEGAGGTLGSLGG---FSVTNNTQ 59 Query: 66 PEVDISYFFTKNIAAELVLTYPQEQDV--RLNGSKIGTFKHLPPSLLVQYHFM-PDSAFS 122 + +Y T NI EL+ P + R G I T HLPP+L+ Q++F S F Sbjct: 60 LGLTFTYMATDNIGVELLAATPFRHKIGTRATGD-IATVHHLPPTLMAQWYFGDASSKFR 118 Query: 123 PYVGAGINYTRI--SSVNISG------GLQLDNSSFGGALQIGADYKINKNWLINFDIKK 174 PYVGAGINYT + N G L L +S +G A Q+G DY IN++WL+N + Sbjct: 119 PYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDS-WGAAGQVGVDYLINRDWLVNMSVWY 177 Query: 175 VQISSDVKTAAGAKI--SSVKIDPWLIGVGVGYRF 207 + I + K +G SV++DPW+ GYRF Sbjct: 178 MDIDTTAKYKSGVTTVKDSVRLDPWVFMFSAGYRF 212 >ECs1756 [M] COG3047 Outer membrane protein W Ecs Escherichia coli O157:H7 Length = 212 Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 20/215 (9%) Query: 7 IAAAAAAFASSFAAPVFAQEAQSPWLVRVRAVHLSP-ENKSDPINGQGASDLITINSKTI 65 + AA A + + FA EA + +R + + P E + G ++ + T Sbjct: 4 LTVAALAVTTLLSGSAFAHEA-GEFFMRAGSATVRPTEGAGGTLGSLGG---FSVTNNTQ 59 Query: 66 PEVDISYFFTKNIAAELVLTYPQEQDV--RLNGSKIGTFKHLPPSLLVQYHFM-PDSAFS 122 + +Y T NI EL+ P + R G I T HLPP+L+ Q++F S F Sbjct: 60 LGLTFTYMATDNIGVELLAATPFRHKIGTRATGD-IATVHHLPPTLMAQWYFGDASSKFR 118 Query: 123 PYVGAGINYTRI--SSVNISG------GLQLDNSSFGGALQIGADYKINKNWLINFDIKK 174 PYVGAGINYT + N G L L +S +G A Q+G DY IN++WL+N + Sbjct: 119 PYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDS-WGAAGQVGVDYLINRDWLVNMSVWY 177 Query: 175 VQISSDVKTAAGAKI--SSVKIDPWLIGVGVGYRF 207 + I + K +G SV++DPW+ GYRF Sbjct: 178 MDIDTTAKYKSGVTTVKDSVRLDPWVFMFSAGYRF 212 >ompW [M] COG3047 Outer membrane protein W Eco Escherichia coli K12 Length = 212 Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 104/215 (48%), Gaps = 20/215 (9%) Query: 7 IAAAAAAFASSFAAPVFAQEAQSPWLVRVRAVHLSP-ENKSDPINGQGASDLITINSKTI 65 + AA A + + FA EA + +R + + P E + G ++ + T Sbjct: 4 LTVAALAVTTLLSGSAFAHEA-GEFFMRAGSATVRPTEGAGGTLGSLGG---FSVTNNTQ 59 Query: 66 PEVDISYFFTKNIAAELVLTYPQEQDV--RLNGSKIGTFKHLPPSLLVQYHFM-PDSAFS 122 + +Y T NI EL+ P + R G I T HLPP+L+ Q++F S F Sbjct: 60 LGLTFTYMATDNIGVELLAATPFRHKIGTRATG-DIATVHHLPPTLMAQWYFGDASSKFR 118 Query: 123 PYVGAGINYTRI--SSVNISG------GLQLDNSSFGGALQIGADYKINKNWLINFDIKK 174 PYVGAGINYT + N G L L +S +G A Q+G DY IN++WL+N + Sbjct: 119 PYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDS-WGAAGQVGVDYLINRDWLVNMSVWY 177 Query: 175 VQI--SSDVKTAAGAKISSVKIDPWLIGVGVGYRF 207 + I +++ K + SV++DPW+ GYRF Sbjct: 178 MDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF 212 >YPO2201 [M] COG3047 Outer membrane protein W Ype Yersinia pestis Length = 211 Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 107/218 (49%), Gaps = 18/218 (8%) Query: 1 VKKIVTIAAAAAAFASSFAAPVFAQEAQSPWLVRVRAVHLSPENKSDPINGQGASDLITI 60 +KKI A A+ + A+ A EA ++ R + P SD + G G+ + Sbjct: 1 MKKITLALLAVASLVPTAAS---AHEA-GDYIFRAGTATVRPNAGSDDVLGNGS---FKV 53 Query: 61 NSKTIPEVDISYFFTKNIAAELVLTYPQEQDVRLNG-SKIGTFKHLPPSLLVQYHFM-PD 118 ++ T + SY T NI EL+ P V L G I K LPP+L+ QY+F Sbjct: 54 DNNTQLGLTFSYLITDNIGVELLAATPFNHKVGLAGVGTIADVKQLPPTLMAQYYFRDKQ 113 Query: 119 SAFSPYVGAGINYTRI--SSVNISGG-LQLDN----SSFGGALQIGADYKINKNWLINFD 171 PY+G G+NYT+ N +G + L N S+G A Q G DY +++NW++N Sbjct: 114 DKLRPYLGIGLNYTKFFDEKFNATGSDIGLTNLSVKDSWGVAGQAGMDYMVSENWMLNMS 173 Query: 172 IKKVQISSDVK-TAAGAKIS-SVKIDPWLIGVGVGYRF 207 + + I SDVK AG + S + ++ PW+ G GYRF Sbjct: 174 VWWMNIESDVKFNLAGEEHSINTRLAPWVFMFGAGYRF 211